Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Reverse (-)

942018 .. 944094

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAAAAAATGGCTCAGAGAGCGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGAAACTCTAACGCACTGCGTCAACAACTGCGGCGTCACAGGCAATCCCTCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCTCCTCAGCCACCACCACAGCAACCTCATCTTCGGCTGTGACCTTGAAGTTTTCCGGCGAGAAAAGTCCGAGATCTAGCTCCTTTAGCTTCGAGGCTCCGGCCGAGATCACCCGCAGAACGACGGCGTCCGAGATCGCGAGATCGGATGAATCGGCGAATCGGCGAGTTGTAAACCGTTGCTCCGGATGCCGGAGAAAGGTCGGGTTGACCGGGTTCCGGTGCCGGTGCGGCGAACTCTTCTGCTCCGAGCACCGGTACTCCGACCGCCACGTGTGCAGCTACGACTACAAGGCCGCGGGTCGCGAGGCCATCGCGAGAGAAAACCCCGTGGTCAAGGCCGCGAAGATCGTCCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

166

Amino Acids

18.19

Weight (kDa)

9.4

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	5 cut(s)	275, 434, 441, 452, 479
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	8 cut(s)	23, 84, 250, 366, 403, 432, 434, 477
AcoI	YGGCCR	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	409
AcyI	GRCGYC	2 cut(s)	87, 263
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
AflIII	ACRYGT	2 cut(s)	114, 408
AgeI	ACCGGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	46, 133, 184
AluBI	AGCT	3 cut(s)	216, 225, 417
AluI	AGCT	3 cut(s)	216, 225, 417
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	4 cut(s)	237, 429, 444, 474
ApeKI	GCWGC	1 cut(s)	414
AsiGI	ACCGGT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	2 cut(s)	349, 491
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	349, 491
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	5 cut(s)	85, 367, 415, 432, 477
BlsI	GCNGC	5 cut(s)	86, 368, 416, 433, 478
Bme1390I	CCNGG	2 cut(s)	349, 491
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	51, 234, 353, 359
BmrFI	CCNGG	2 cut(s)	349, 491
BmsI	GCATC	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	142
BpuMI	CCSGG	2 cut(s)	349, 491
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	2 cut(s)	87, 263
BsaJI	CCNNGG	2 cut(s)	432, 465
BsaWI	WCCGGW	3 cut(s)	320, 354, 390
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
Bse118I	RCCGGY	2 cut(s)	360, 390
BseAI	TCCGGA	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	432, 465
BseGI	GGATG	2 cut(s)	289, 329
BseLI	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
BseMII	CTCAG	2 cut(s)	29, 156
BseRI	GAGGAG	1 cut(s)	130
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	5 cut(s)	275, 434, 441, 452, 479
Bsh1285I	CGRYCG	2 cut(s)	240, 403
BshFI	GGCC	4 cut(s)	239, 431, 446, 476
BshNI	GGYRCC	1 cut(s)	357
BshTI	ACCGGT	1 cut(s)	390
BsiEI	CGRYCG	2 cut(s)	240, 403
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	9 cut(s)	192, 236, 321, 328, 348, 355, 361, 391, 490
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	4 cut(s)	239, 431, 446, 476
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	209, 243, 270, 278, 483
Bsp68I	TCGCGA	3 cut(s)	275, 441, 452
BspACI	CCGC	8 cut(s)	23, 84, 250, 366, 403, 432, 434, 477
BspANI	GGCC	4 cut(s)	239, 431, 446, 476
BspCNI	CTCAG	2 cut(s)	28, 155
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	5 cut(s)	275, 434, 441, 452, 479
BspLI	GGNNCC	4 cut(s)	51, 234, 353, 359
BspT107I	GGYRCC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	23
BsrFI	RCCGGY	2 cut(s)	360, 390
BssAI	RCCGGY	2 cut(s)	360, 390
BssECI	CCNNGG	2 cut(s)	432, 465
BssMI	GATC	5 cut(s)	209, 243, 270, 278, 483
BssNI	GRCGYC	2 cut(s)	87, 263
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	27, 380
BstACI	GRCGYC	2 cut(s)	87, 263
BstBAI	YACGTR	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	15, 142
BstDSI	CCRYGG	2 cut(s)	432, 465
BstF5I	GGATG	2 cut(s)	289, 329
BstFNI	CGCG	5 cut(s)	275, 434, 441, 452, 479
BstKTI	GATC	5 cut(s)	212, 246, 273, 281, 486
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	5 cut(s)	209, 243, 270, 278, 483
BstMCI	CGRYCG	2 cut(s)	240, 403
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 93, 126, 143, 222, 324, 366, 411
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	347, 489
BstUI	CGCG	5 cut(s)	275, 434, 441, 452, 479
BstV1I	GCAGC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	239, 431, 446, 476
BtgI	CCRYGG	2 cut(s)	432, 465
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	289, 329
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
BtuMI	TCGCGA	3 cut(s)	275, 441, 452
Cfr10I	RCCGGY	2 cut(s)	360, 390
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	3 cut(s)	61, 76, 252
Csp6I	GTAC	1 cut(s)	394
CspAI	ACCGGT	1 cut(s)	390
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	15, 142
DpnI	GATC	5 cut(s)	211, 245, 272, 280, 485
DpnII	GATC	5 cut(s)	209, 243, 270, 278, 483
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	27, 380
EarI	CTCTTC	2 cut(s)	27, 380
EclXI	CGGCCG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	237
Eco72I	CACGTG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	118
FaiI	YATR	1 cut(s)	116
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	114
FauI	CCCGC	2 cut(s)	257, 427
Fnu4HI	GCNGC	5 cut(s)	85, 367, 415, 432, 477
FokI	GGATG	2 cut(s)	296, 336
Fsp4HI	GCNGC	5 cut(s)	85, 367, 415, 432, 477
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	5 cut(s)	85, 367, 415, 432, 477
HaeIII	GGCC	4 cut(s)	239, 431, 446, 476
HapII	CCGG	9 cut(s)	192, 236, 321, 328, 348, 355, 361, 391, 490
HgaI	GACGC	3 cut(s)	61, 76, 252
Hin1I	GRCGYC	2 cut(s)	87, 263
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	76, 345
HindII	GTYRAC	2 cut(s)	76, 345
HinfI	GANTC	2 cut(s)	287, 295
HpaII	CCGG	9 cut(s)	192, 236, 321, 328, 348, 355, 361, 391, 490
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	76, 310, 345
Hpy188I	TCNGA	6 cut(s)	18, 207, 268, 283, 385, 400
Hpy188III	TCNNGA	4 cut(s)	274, 321, 440, 451
Hpy8I	GTNNAC	3 cut(s)	76, 310, 345
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 93, 126, 143, 222, 324, 366, 411
HpyF3I	CTNAG	2 cut(s)	15, 142
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	87, 263
Hsp92II	CATG	1 cut(s)	118
Kpn2I	TCCGGA	1 cut(s)	320
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	209, 243, 270, 278, 483
LmnI	GCTCC	4 cut(s)	221, 238, 323, 386
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	88, 175
MalI	GATC	5 cut(s)	211, 245, 272, 280, 485
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	5 cut(s)	209, 243, 270, 278, 483
MboII	GAAGA	4 cut(s)	44, 159, 367, 493
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	6 cut(s)	112, 148, 151, 172, 223, 436
MroI	TCCGGA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	9 cut(s)	192, 236, 321, 328, 348, 355, 361, 391, 490
MspR9I	CCNGG	2 cut(s)	349, 491
MvnI	CGCG	5 cut(s)	275, 434, 441, 452, 479
MwoI	GCNNNNNNNGC	8 cut(s)	20, 93, 126, 143, 222, 324, 366, 411
NciI	CCSGG	2 cut(s)	349, 491
NdeII	GATC	5 cut(s)	209, 243, 270, 278, 483
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	4 cut(s)	51, 234, 353, 359
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	88, 175
NruI	TCGCGA	3 cut(s)	275, 441, 452
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	287, 295
PflFI	GACNNNGTC	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	5 cut(s)	86, 368, 416, 433, 478
PmaCI	CACGTG	1 cut(s)	409
PmlI	CACGTG	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	51, 234, 353, 359
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	262
RruI	TCGCGA	3 cut(s)	275, 441, 452
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacII	CCGCGG	1 cut(s)	435
SatI	GCNGC	5 cut(s)	85, 367, 415, 432, 477
Sau3AI	GATC	5 cut(s)	209, 243, 270, 278, 483
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	349, 491
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	8 cut(s)	51, 164, 182, 218, 227, 339, 411, 419
SfaNI	GCATC	1 cut(s)	314
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	49
SsiI	CCGC	8 cut(s)	23, 84, 250, 366, 403, 432, 434, 477
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	347, 489
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	4 cut(s)	87, 369, 434, 479
TfiI	GAWTC	2 cut(s)	287, 295
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	2 cut(s)	88, 175
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	2 cut(s)	88, 175
TspDTI	ATGAA	2 cut(s)	17, 300
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	74
Tth111I	GACNNNGTC	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.