Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Forward (+)

26001562 .. 26001972

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1222800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCACAGAGAGCCGAGAAGGAAGAGACAGAGTTCAAGGTCCCCGAAACTCTAACGCACTACGTCAACAACTGTGGCGTCACCGATAATCCCTCCACCAACAACTTGTGCCAGAAGTGCTTCAACACCGCCACCACCTCATCGTCGTTTTCGTCCGCGGCGATTTTCAAGCTTTCTGCGGAGAAAAGTCCGATATCTACCTCATCCTTCAGCTTCGAGGCCCTAGCCGAGACCTTTCGGAAGACGACGGCGTCGGAGATCGCGAGATCGGACGAATCGCTGAATAGGCGCGTGGTCAATCGGTGCTCCGAATGCCGGAGAAAGGTCGGGTTGACCGGATTTCGGTTTCATCTCGCGATATTATCGATATTATCAATAATATCGCGATATATTTCCCAAATAATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

137

Amino Acids

15.22

Weight (kDa)

8.91

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AccII	CGCG	5 cut(s)	158, 263, 291, 356, 385
AciI	CCGC	4 cut(s)	129, 156, 158, 179
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	2 cut(s)	78, 251
AfiI	CCNNNNNNNGG	3 cut(s)	315, 322, 342
AgsI	TTSAA	3 cut(s)	37, 124, 169
AluBI	AGCT	2 cut(s)	172, 213
AluI	AGCT	2 cut(s)	172, 213
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	20, 224
AoxI	GGCC	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	40, 220
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	20, 224
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 220
BmiI	GGNNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	365
BsaHI	GRCGYC	2 cut(s)	78, 251
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 322, 342
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	3 cut(s)	315, 322, 342
Bsh1236I	CGCG	5 cut(s)	158, 263, 291, 356, 385
BshFI	GGCC	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	316, 336
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	315, 322, 342
BsmAI	GTCTC	2 cut(s)	20, 224
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	221
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	258, 266
Bsp68I	TCGCGA	3 cut(s)	263, 356, 385
BspACI	CCGC	4 cut(s)	129, 156, 158, 179
BspANI	GGCC	1 cut(s)	221
BspDI	ATCGAT	1 cut(s)	365
BspFNI	CGCG	5 cut(s)	158, 263, 291, 356, 385
BspLI	GGNNCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	258, 266
BssNI	GRCGYC	2 cut(s)	78, 251
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	78, 251
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	203
BstFNI	CGCG	5 cut(s)	158, 263, 291, 356, 385
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	261, 269
BstMAI	GTCTC	2 cut(s)	20, 224
BstMBI	GATC	2 cut(s)	258, 266
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 117, 286, 312
BstUI	CGCG	5 cut(s)	158, 263, 291, 356, 385
BstV2I	GAAGAC	1 cut(s)	248
Bsu15I	ATCGAT	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	203
BtuMI	TCGCGA	3 cut(s)	263, 356, 385
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	40, 220
Cfr42I	CCGCGG	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	365
CseI	GACGC	2 cut(s)	67, 240
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviJI	RGCY	5 cut(s)	14, 172, 213, 221, 227
CviKI_1	RGCY	5 cut(s)	14, 172, 213, 221, 227
DpnI	GATC	2 cut(s)	260, 268
DpnII	GATC	2 cut(s)	258, 266
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	193
EcoO109I	RGGNCCY	2 cut(s)	40, 220
EcoRV	GATATC	1 cut(s)	195
FaiI	YATR	1 cut(s)	390
FaqI	GGGAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	2 cut(s)	316, 336
HgaI	GACGC	2 cut(s)	67, 240
HhaI	GCGC	1 cut(s)	291
Hin1I	GRCGYC	2 cut(s)	78, 251
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	2 cut(s)	67, 333
HindII	GTYRAC	2 cut(s)	67, 333
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	316, 336
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	67, 333
Hpy188I	TCNGA	5 cut(s)	192, 240, 256, 271, 310
Hpy188III	TCNNGA	3 cut(s)	262, 355, 384
Hpy8I	GTNNAC	2 cut(s)	67, 333
Hpy99I	CGWCG	3 cut(s)	148, 250, 256
HpyAV	CCTTC	2 cut(s)	13, 217
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 117, 286, 312
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	2 cut(s)	78, 251
HspAI	GCGC	1 cut(s)	289
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	258, 266
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	3 cut(s)	125, 329, 349
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	260, 268
MboI	GATC	2 cut(s)	258, 266
MboII	GAAGA	2 cut(s)	35, 253
MhlI	GDGCHC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	103, 148, 211, 211
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	316, 336
Mva1269I	GAATGC	1 cut(s)	317
MvnI	CGCG	5 cut(s)	158, 263, 291, 356, 385
MwoI	GCNNNNNNNGC	4 cut(s)	11, 117, 286, 312
NdeII	GATC	2 cut(s)	258, 266
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	2 cut(s)	40, 253
NmuCI	GTSAC	1 cut(s)	79
NruI	TCGCGA	3 cut(s)	263, 356, 385
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 158, 260
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	40, 220
PspPPI	RGGWCCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	250
RruI	TCGCGA	3 cut(s)	263, 356, 385
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	258, 266
Sau96I	GGNCC	2 cut(s)	40, 220
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	8 cut(s)	42, 66, 140, 174, 203, 215, 236, 327
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	40
SsiI	CCGC	4 cut(s)	129, 156, 158, 179
SspMI	CTAG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	216, 365
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	338
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.