Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Reverse (-)

532704 .. 533243

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCACAGAGAGCCGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGAAACTCTAACGCACTGCGTCAACAACTGCGGCGTCACCGGTAATCCCTCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCGCATCGGCCGCCGCCACCACCTCATCGTCGTCTTCGTCCGCGGCGATTTTGAAGTTCTCTGCAGAGAAAAGTCCGAGATCTACCTCATCCTTCAGCTTCGAGGCCCCGGCCGAGACCTTCCGGAAGACGACGGCGTTGGAGATCGCGAGATCGGACGAATCGCCGAATAGGCGCGTGGTCAATCGGTGCTCCGGATGCCGGAGAAAGGTCGGGTTGACCGGATTCCGGTGCCGGTGCGGCGATCTCTTCTGCTCCGAGCACCGGTACTCCGACCGCCATGTGTGCAGCTACGACTACAAGGCCGCCGGTCGCGAGGCCATCGCGAGAGAAAACCCCGTGGTCAAGGCCGCGAATTTGATCGATCGTCCGGGTCTGACTTGTTTGATAATTATACATCGATTGAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

180

Amino Acids

19.63

Weight (kDa)

9.05

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	21 - 42	1.2e-07	A20-like zinc finger
zf-AN1	PF01428	106 - 143	2.8e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	357
AccII	CGCG	6 cut(s)	170, 275, 303, 441, 452, 479
AccIII	TCCGGA	2 cut(s)	249, 320
AcoI	YGGCCR	2 cut(s)	135, 237
AcsI	RAATTY	2 cut(s)	481, 532
AcuI	CTGAAG	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
AflIII	ACRYGT	1 cut(s)	105
AgeI	ACCGGT	2 cut(s)	83, 390
AgsI	TTSAA	4 cut(s)	37, 124, 181, 532
AluBI	AGCT	2 cut(s)	225, 417
AluI	AGCT	2 cut(s)	225, 417
Alw21I	GWGCWC	2 cut(s)	320, 390
Alw26I	GTCTC	2 cut(s)	20, 236
Aor13HI	TCCGGA	2 cut(s)	249, 320
AoxI	GGCC	6 cut(s)	135, 231, 237, 429, 444, 474
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	481, 532
AsiGI	ACCGGT	2 cut(s)	83, 390
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	40, 232
AsuC2I	CCSGG	2 cut(s)	236, 498
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	153, 260
Bbv12I	GWGCWC	2 cut(s)	320, 390
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	236, 498
BcoDI	GTCTC	2 cut(s)	20, 236
BfmI	CTRYAG	1 cut(s)	189
BglI	GCCNNNNNGGC	3 cut(s)	134, 298, 366
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	9 cut(s)	76, 129, 138, 141, 171, 367, 415, 432, 477
BlsI	GCNGC	9 cut(s)	77, 130, 139, 142, 172, 368, 416, 433, 478
Bme1390I	CCNGG	2 cut(s)	236, 498
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 232
BmiI	GGNNCC	3 cut(s)	42, 234, 359
BmrFI	CCNGG	2 cut(s)	236, 498
BmsI	GCATC	2 cut(s)	140, 314
BpiI	GAAGAC	2 cut(s)	153, 260
BpuMI	CCSGG	2 cut(s)	236, 498
Bsa29I	ATCGAT	2 cut(s)	489, 526
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	168, 234, 465
BsaWI	WCCGGW	6 cut(s)	83, 249, 320, 347, 354, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
Bse118I	RCCGGY	4 cut(s)	83, 360, 390, 434
BseAI	TCCGGA	2 cut(s)	249, 320
BseCI	ATCGAT	2 cut(s)	489, 526
BseDI	CCNNGG	3 cut(s)	168, 234, 465
BseGI	GGATG	2 cut(s)	215, 329
BseLI	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
BseX3I	CGGCCG	2 cut(s)	135, 237
BseXI	GCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	6 cut(s)	170, 275, 303, 441, 452, 479
Bsh1285I	CGRYCG	5 cut(s)	138, 240, 403, 439, 493
BshFI	GGCC	6 cut(s)	137, 233, 239, 431, 446, 476
BshNI	GGYRCC	1 cut(s)	357
BshTI	ACCGGT	2 cut(s)	83, 390
BshVI	ATCGAT	2 cut(s)	489, 526
BsiEI	CGRYCG	5 cut(s)	138, 240, 403, 439, 493
BsiHKAI	GWGCWC	2 cut(s)	320, 390
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	327, 334, 354, 390
BsmAI	GTCTC	2 cut(s)	20, 236
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	6 cut(s)	137, 233, 239, 431, 446, 476
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	320, 390
Bsp13I	TCCGGA	2 cut(s)	249, 320
Bsp143I	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
Bsp68I	TCGCGA	3 cut(s)	275, 441, 452
BspANI	GGCC	6 cut(s)	137, 233, 239, 431, 446, 476
BspDI	ATCGAT	2 cut(s)	489, 526
BspEI	TCCGGA	2 cut(s)	249, 320
BspFNI	CGCG	6 cut(s)	170, 275, 303, 441, 452, 479
BspLI	GGNNCC	3 cut(s)	42, 234, 359
BspMAI	CTGCAG	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	4 cut(s)	83, 360, 390, 434
BssAI	RCCGGY	4 cut(s)	83, 360, 390, 434
BssECI	CCNNGG	3 cut(s)	168, 234, 465
BssMI	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
BssNI	GRCGYC	1 cut(s)	78
Bst6I	CTCTTC	2 cut(s)	18, 380
BstACI	GRCGYC	1 cut(s)	78
BstDSI	CCRYGG	2 cut(s)	168, 465
BstF5I	GGATG	2 cut(s)	215, 329
BstFNI	CGCG	6 cut(s)	170, 275, 303, 441, 452, 479
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	6 cut(s)	209, 273, 281, 373, 489, 493
BstMAI	GTCTC	2 cut(s)	20, 236
BstMBI	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
BstMCI	CGRYCG	5 cut(s)	138, 240, 403, 439, 493
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 117, 134, 137, 298, 324, 366, 411
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	234, 496
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	6 cut(s)	170, 275, 303, 441, 452, 479
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	2 cut(s)	153, 260
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZI	CGGCCG	2 cut(s)	135, 237
Bsu15I	ATCGAT	2 cut(s)	489, 526
BsuRI	GGCC	6 cut(s)	137, 233, 239, 431, 446, 476
BsuTUI	ATCGAT	2 cut(s)	489, 526
BtgI	CCRYGG	2 cut(s)	168, 465
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	215, 329
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
BtuMI	TCGCGA	3 cut(s)	275, 441, 452
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	4 cut(s)	83, 360, 390, 434
Cfr13I	GGNCC	2 cut(s)	40, 232
Cfr42I	CCGCGG	1 cut(s)	171
ClaI	ATCGAT	2 cut(s)	489, 526
CseI	GACGC	2 cut(s)	52, 67
Csp6I	GTAC	1 cut(s)	394
CspAI	ACCGGT	2 cut(s)	83, 390
CviAII	CATG	2 cut(s)	106, 407
CviJI	RGCY	9 cut(s)	14, 137, 225, 233, 239, 417, 431, 446, 476
CviKI_1	RGCY	9 cut(s)	14, 137, 225, 233, 239, 417, 431, 446, 476
CviQI	GTAC	1 cut(s)	394
DpnI	GATC	6 cut(s)	208, 272, 280, 372, 488, 492
DpnII	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
EaeI	YGGCCR	2 cut(s)	135, 237
EagI	CGGCCG	2 cut(s)	135, 237
Eam1104I	CTCTTC	2 cut(s)	18, 380
EarI	CTCTTC	2 cut(s)	18, 380
EclXI	CGGCCG	2 cut(s)	135, 237
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	40
Eco52I	CGGCCG	2 cut(s)	135, 237
Eco57I	CTGAAG	1 cut(s)	205
EcoO109I	RGGNCCY	2 cut(s)	40, 232
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	109, 410
FaiI	YATR	3 cut(s)	107, 408, 521
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	105, 406
Fnu4HI	GCNGC	9 cut(s)	76, 129, 138, 141, 171, 367, 415, 432, 477
FokI	GGATG	2 cut(s)	202, 336
Fsp4HI	GCNGC	9 cut(s)	76, 129, 138, 141, 171, 367, 415, 432, 477
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	9 cut(s)	76, 129, 138, 141, 171, 367, 415, 432, 477
HaeIII	GGCC	6 cut(s)	137, 233, 239, 431, 446, 476
HgaI	GACGC	2 cut(s)	52, 67
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	109, 410
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	2 cut(s)	67, 345
HindII	GTYRAC	2 cut(s)	67, 345
HinfI	GANTC	2 cut(s)	287, 351
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	67, 345
Hpy188I	TCNGA	5 cut(s)	204, 283, 385, 400, 504
Hpy188III	TCNNGA	5 cut(s)	250, 274, 321, 440, 451
Hpy8I	GTNNAC	2 cut(s)	67, 345
Hpy99I	CGWCG	2 cut(s)	160, 262
HpyAV	CCTTC	3 cut(s)	13, 229, 256
HpyCH4V	TGCA	2 cut(s)	191, 414
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 117, 134, 137, 298, 324, 366, 411
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	109, 410
HspAI	GCGC	1 cut(s)	301
Kpn2I	TCCGGA	2 cut(s)	249, 320
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
LmnI	GCTCC	2 cut(s)	323, 386
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	2 cut(s)	140, 314
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	6 cut(s)	208, 272, 280, 372, 488, 492
MboI	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
MboII	GAAGA	4 cut(s)	35, 153, 265, 367
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	320, 390
MluCI	AATT	3 cut(s)	481, 516, 532
MmeI	TCCRAC	2 cut(s)	246, 423
MnlI	CCTC	5 cut(s)	103, 160, 223, 223, 436
MroI	TCCGGA	2 cut(s)	249, 320
MroXI	GAANNNNTTC	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	236, 498
MvnI	CGCG	6 cut(s)	170, 275, 303, 441, 452, 479
MwoI	GCNNNNNNNGC	8 cut(s)	11, 117, 134, 137, 298, 324, 366, 411
NciI	CCSGG	2 cut(s)	236, 498
NdeII	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
NlaIII	CATG	2 cut(s)	109, 410
NlaIV	GGNNCC	3 cut(s)	42, 234, 359
NmeAIII	GCCGAG	2 cut(s)	40, 265
NmuCI	GTSAC	1 cut(s)	79
NruI	TCGCGA	3 cut(s)	275, 441, 452
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 170
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	287, 351
PinAI	ACCGGT	2 cut(s)	83, 390
PkrI	GCNGC	9 cut(s)	77, 130, 139, 142, 172, 368, 416, 433, 478
Ple19I	CGATCG	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	42, 234, 359
PspPI	GGNCC	2 cut(s)	40, 232
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	206
PvuI	CGATCG	1 cut(s)	493
RruI	TCGCGA	3 cut(s)	275, 441, 452
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacII	CCGCGG	1 cut(s)	171
SatI	GCNGC	9 cut(s)	76, 129, 138, 141, 171, 367, 415, 432, 477
Sau3AI	GATC	6 cut(s)	206, 270, 278, 370, 486, 490
Sau96I	GGNCC	2 cut(s)	40, 232
ScrFI	CCNGG	2 cut(s)	236, 498
SduI	GDGCHC	2 cut(s)	320, 390
SetI	ASST	7 cut(s)	42, 152, 215, 227, 248, 339, 419
SfaNI	GCATC	2 cut(s)	140, 314
SfcI	CTRYAG	1 cut(s)	189
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	481, 516, 532
StyD4I	CCNGG	2 cut(s)	234, 496
TaqI	TCGA	3 cut(s)	228, 489, 526
TasI	AATT	3 cut(s)	481, 516, 532
TauI	GCSGC	8 cut(s)	78, 131, 140, 143, 173, 369, 434, 479
TfiI	GAWTC	2 cut(s)	287, 351
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	481, 532
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.