Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Reverse (-)

2261066 .. 2262163

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTCAGAGGACGGAGAAGGAAGAGACGGAGTTCAAGGTCCCCGACACCTTAACGCACTGCGTCAACAACTGCGGCGTCACAGGCAATCCCGCCACCAACAACATGTGCCAGAAGTGCTTCAACGCCACCACCGCCGCATCCACGGCCGCCGCCGCCACCGCAACGACGACCGCCGTTTTCAAGTTTTCCGGCGAGAAAGTCCCGAGATCCAGCTCCTTCCGCTTCGACGGTCCCTCCGAAACCATCCGCAAAGCGGCCGCGTCGGTGGAGAGCACGAGATCGGAGGAGTCGTCGATGAGGCGCGTGGTCAACCGGTGCTCTGGATGCAGGAGAAAGGTCGGGTTGACCGGATTCCGGTGCCGGTGCGGGGAGCTGTTCTGCGCAGAGCACCGGTACTCGGATCGACACGTGTGTAGCTATGACTACAAGGCCGCGGGTCGAGAGGCTATAGCCAGAGAAAACCCCGTGGTCAAAGCGGCCAAGATCGTCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

166

Amino Acids

18.16

Weight (kDa)

9.32

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	21 - 42	1.1e-08	A20-like zinc finger
zf-AN1	PF01428	107 - 144	2.3e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	3 cut(s)	263, 306, 437
AclWI	GGATC	2 cut(s)	204, 411
AcoI	YGGCCR	3 cut(s)	147, 258, 480
AcvI	CACGTG	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	4 cut(s)	256, 357, 370, 400
AflIII	ACRYGT	3 cut(s)	105, 409, 411
AgeI	ACCGGT	2 cut(s)	315, 393
AgsI	TTSAA	3 cut(s)	37, 124, 184
AluBI	AGCT	3 cut(s)	216, 376, 420
AluI	AGCT	3 cut(s)	216, 376, 420
Alw21I	GWGCWC	3 cut(s)	278, 323, 393
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	204, 411
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	4 cut(s)	147, 258, 432, 480
AsiGI	ACCGGT	2 cut(s)	315, 393
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	306, 386
AspS9I	GGNCC	2 cut(s)	40, 233
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	40, 233
BanI	GGYRCC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	412
Bbv12I	GWGCWC	3 cut(s)	278, 323, 393
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	2 cut(s)	161, 162
BcoDI	GTCTC	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	9 cut(s)	76, 138, 150, 153, 156, 258, 261, 435, 480
BlsI	GCNGC	9 cut(s)	77, 139, 151, 154, 157, 259, 262, 436, 481
Bme18I	GGWCC	2 cut(s)	40, 233
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	40, 233
BmiI	GGNNCC	3 cut(s)	42, 235, 362
BmsI	GCATC	2 cut(s)	149, 317
BsaAI	YACGTR	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	144, 435, 468
BsaWI	WCCGGW	4 cut(s)	315, 350, 357, 393
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 278, 308
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 357, 370, 400
Bse118I	RCCGGY	3 cut(s)	315, 363, 393
BseDI	CCNNGG	3 cut(s)	144, 435, 468
BseGI	GGATG	3 cut(s)	140, 246, 332
BseLI	CCNNNNNNNGG	4 cut(s)	256, 357, 370, 400
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	302
BseX3I	CGGCCG	2 cut(s)	147, 258
Bsh1236I	CGCG	3 cut(s)	263, 306, 437
Bsh1285I	CGRYCG	3 cut(s)	150, 174, 261
BshFI	GGCC	4 cut(s)	149, 260, 434, 482
BshNI	GGYRCC	1 cut(s)	360
BshTI	ACCGGT	2 cut(s)	315, 393
BsiEI	CGRYCG	3 cut(s)	150, 174, 261
BsiHKAI	GWGCWC	3 cut(s)	278, 323, 393
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	6 cut(s)	192, 316, 351, 358, 364, 394
BslFI	GGGAC	3 cut(s)	26, 188, 219
BslI	CCNNNNNNNGG	4 cut(s)	256, 357, 370, 400
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	3 cut(s)	26, 188, 219
BsnI	GGCC	4 cut(s)	149, 260, 434, 482
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	278, 323, 393
Bsp143I	GATC	4 cut(s)	209, 281, 403, 486
BspANI	GGCC	4 cut(s)	149, 260, 434, 482
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	3 cut(s)	263, 306, 437
BspLI	GGNNCC	3 cut(s)	42, 235, 362
BspPI	GGATC	2 cut(s)	204, 411
BspT107I	GGYRCC	1 cut(s)	360
BsrFI	RCCGGY	3 cut(s)	315, 363, 393
BssAI	RCCGGY	3 cut(s)	315, 363, 393
BssECI	CCNNGG	3 cut(s)	144, 435, 468
BssMI	GATC	4 cut(s)	209, 281, 403, 486
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	3 cut(s)	144, 435, 468
BstF5I	GGATG	3 cut(s)	140, 246, 332
BstFNI	CGCG	3 cut(s)	263, 306, 437
BstHHI	GCGC	2 cut(s)	306, 386
BstKTI	GATC	4 cut(s)	212, 284, 406, 489
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	4 cut(s)	209, 281, 403, 486
BstMCI	CGRYCG	3 cut(s)	150, 174, 261
BstMWI	GCNNNNNNNGC	8 cut(s)	84, 117, 134, 146, 155, 161, 222, 327
BstNSI	RCATGY	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	3 cut(s)	263, 306, 437
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BstZI	CGGCCG	2 cut(s)	147, 258
BsuRI	GGCC	4 cut(s)	149, 260, 434, 482
BtgI	CCRYGG	3 cut(s)	144, 435, 468
BtsCI	GGATG	3 cut(s)	140, 246, 332
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
CciNI	GCGGCCGC	1 cut(s)	258
CfoI	GCGC	2 cut(s)	306, 386
Cfr10I	RCCGGY	3 cut(s)	315, 363, 393
Cfr13I	GGNCC	2 cut(s)	40, 233
Cfr42I	CCGCGG	1 cut(s)	438
CseI	GACGC	3 cut(s)	52, 67, 252
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	2 cut(s)	315, 393
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	211, 283, 405, 488
DpnII	GATC	4 cut(s)	209, 281, 403, 486
EaeI	YGGCCR	3 cut(s)	147, 258, 480
EagI	CGGCCG	2 cut(s)	147, 258
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EclXI	CGGCCG	2 cut(s)	147, 258
Eco47I	GGWCC	2 cut(s)	40, 233
Eco52I	CGGCCG	2 cut(s)	147, 258
Eco72I	CACGTG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	109
FaiI	YATR	3 cut(s)	107, 423, 452
FaqI	GGGAC	3 cut(s)	26, 188, 219
FatI	CATG	1 cut(s)	105
FauI	CCCGC	3 cut(s)	100, 362, 430
Fnu4HI	GCNGC	9 cut(s)	76, 138, 150, 153, 156, 258, 261, 435, 480
FokI	GGATG	3 cut(s)	127, 233, 339
Fsp4HI	GCNGC	9 cut(s)	76, 138, 150, 153, 156, 258, 261, 435, 480
FspI	TGCGCA	1 cut(s)	385
GlaI	GCGC	2 cut(s)	305, 385
GluI	GCNGC	9 cut(s)	76, 138, 150, 153, 156, 258, 261, 435, 480
HaeIII	GGCC	4 cut(s)	149, 260, 434, 482
HapII	CCGG	6 cut(s)	192, 316, 351, 358, 364, 394
HgaI	GACGC	3 cut(s)	52, 67, 252
HhaI	GCGC	2 cut(s)	306, 386
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	304, 384
HinP1I	GCGC	2 cut(s)	304, 384
HincII	GTYRAC	3 cut(s)	67, 313, 348
HindII	GTYRAC	3 cut(s)	67, 313, 348
HinfI	GANTC	2 cut(s)	290, 354
HpaII	CCGG	6 cut(s)	192, 316, 351, 358, 364, 394
Hpy166II	GTNNAC	3 cut(s)	67, 313, 348
Hpy188I	TCNGA	4 cut(s)	9, 241, 286, 403
Hpy188III	TCNNGA	3 cut(s)	205, 324, 443
Hpy8I	GTNNAC	3 cut(s)	67, 313, 348
Hpy99I	CGWCG	4 cut(s)	172, 233, 268, 298
HpyAV	CCTTC	2 cut(s)	13, 229
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	8 cut(s)	84, 117, 134, 146, 155, 161, 222, 327
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	2 cut(s)	304, 384
KspI	CCGCGG	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	209, 281, 403, 486
LmnI	GCTCC	2 cut(s)	221, 373
LweI	GCATC	2 cut(s)	149, 317
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	211, 283, 405, 488
MboI	GATC	4 cut(s)	209, 281, 403, 486
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	3 cut(s)	278, 323, 393
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	5 cut(s)	3, 247, 280, 294, 439
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	6 cut(s)	192, 316, 351, 358, 364, 394
MvnI	CGCG	3 cut(s)	263, 306, 437
MwoI	GCNNNNNNNGC	8 cut(s)	84, 117, 134, 146, 155, 161, 222, 327
NdeII	GATC	4 cut(s)	209, 281, 403, 486
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	42, 235, 362
NmuCI	GTSAC	1 cut(s)	79
NotI	GCGGCCGC	1 cut(s)	258
NsbI	TGCGCA	1 cut(s)	385
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 290
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	354
PinAI	ACCGGT	2 cut(s)	315, 393
PkrI	GCNGC	9 cut(s)	77, 139, 151, 154, 157, 259, 262, 436, 481
PleI	GAGTC	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	42, 235, 362
PspPI	GGNCC	2 cut(s)	40, 233
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SacII	CCGCGG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	9 cut(s)	76, 138, 150, 153, 156, 258, 261, 435, 480
Sau3AI	GATC	4 cut(s)	209, 281, 403, 486
Sau96I	GGNCC	2 cut(s)	40, 233
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	3 cut(s)	278, 323, 393
SetI	ASST	7 cut(s)	42, 53, 218, 342, 378, 414, 422
SfaNI	GCATC	2 cut(s)	149, 317
SfcI	CTRYAG	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	438
SgrBI	CCGCGG	1 cut(s)	438
SinI	GGWCC	2 cut(s)	40, 233
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	4 cut(s)	228, 296, 406, 442
TauI	GCSGC	9 cut(s)	78, 140, 152, 155, 158, 260, 263, 437, 482
TfiI	GAWTC	1 cut(s)	354
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	2 cut(s)	29, 44
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	40, 233
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.