Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016639

Physical Location & Seq

Genomic Coordinates Reverse (-)

1302516 .. 1304157

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTCAGAGGACAGAGAAGGAGGAGACGGAGTTCAAGGTTCCAGATACCTTAACGCACTGCGTCAACAACTGCGGCGTCACAGGCAATCCCGCCACCAACAACATGTGCCAGAAGTGCTTCAACGCAACCACCTCCACGCCTACAACCGTCGCCACCGCAACAACATCATCAACAACCGCCGCGGTTTTCAAGTTCTCCGGCGAGAAGGTCCCGAGATCCAGCTCGTTTCGCTTCGACGCTCCTCCCTCCGAAACCATCCGTAAAGCGGCCGCGTCGGCGGAGAGCACGAGATCGGAGGAGTCGTCGATGAGGCGCGTGGTCAACCGGTGCTCCGGATGCCGGAGAAAGGTGGGGTTGACCGGATTCCGGTGCCGGTGCGGGGAGCTGTTCTGTTCAGAGCACCGGTATTCGGATCGGCACGTGTGTAGCTACGACTACAAGGCCGCCGGTCGCGAGGCCATAGCCAGAGAAAACCCCGTGGTCAAGGCCGCCAAGATCGTCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

171

Amino Acids

18.65

Weight (kDa)

9.32

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	21 - 42	1.2e-08	A20-like zinc finger
zf-AN1	PF01428	111 - 148	1.8e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12630
fragaria_vesca	FvH4_7g00810
malus_domestica	MD02G1222800.v1.1 MD02G1314600.v1.1 MD07G1007300.v1.1
prunus_persica	Prupe.2G010300_v2.0.a1
pyrus_communis	pycom02g26380 pycom07g00580
rosa_chinensis	RchiOBHm_Chr1g0314971
rosa_laevigata	RLG00000030751
rosa_roxburghii	Rroxscaffold_4G00331630
rosa_rugosa	Rorug01G0004000.1
rosa_samantha	Rh1BG006200
rosa_wichuraiana	Rw1G000690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	372
AccII	CGCG	4 cut(s)	185, 275, 318, 456
AccIII	TCCGGA	1 cut(s)	335
AclWI	GGATC	2 cut(s)	213, 423
AcoI	YGGCCR	1 cut(s)	270
AcvI	CACGTG	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	6 cut(s)	268, 342, 349, 369, 382, 412
AflIII	ACRYGT	2 cut(s)	105, 423
AgeI	ACCGGT	2 cut(s)	327, 405
AgsI	TTSAA	3 cut(s)	37, 124, 193
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	3 cut(s)	225, 388, 432
AluI	AGCT	3 cut(s)	225, 388, 432
Alw21I	GWGCWC	3 cut(s)	290, 335, 405
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	213, 423
Ama87I	CYCGRG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	335
AoxI	GGCC	4 cut(s)	270, 444, 459, 489
AsiGI	ACCGGT	2 cut(s)	327, 405
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	372
BauI	CACGAG	1 cut(s)	289
BbrPI	CACGTG	1 cut(s)	424
Bbv12I	GWGCWC	3 cut(s)	290, 335, 405
BccI	CCATC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	6 cut(s)	76, 183, 270, 273, 447, 492
BlsI	GCNGC	6 cut(s)	77, 184, 271, 274, 448, 493
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	42, 213, 374
BmsI	GCATC	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	183, 480
BsaWI	WCCGGW	5 cut(s)	327, 335, 362, 369, 405
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 290, 317, 320, 347
Bsc4I	CCNNNNNNNGG	6 cut(s)	268, 342, 349, 369, 382, 412
Bse118I	RCCGGY	4 cut(s)	327, 375, 405, 449
BseAI	TCCGGA	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	183, 480
BseGI	GGATG	2 cut(s)	258, 344
BseLI	CCNNNNNNNGG	6 cut(s)	268, 342, 349, 369, 382, 412
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	3 cut(s)	38, 234, 314
BseX3I	CGGCCG	1 cut(s)	270
Bsh1236I	CGCG	4 cut(s)	185, 275, 318, 456
Bsh1285I	CGRYCG	2 cut(s)	273, 454
BshFI	GGCC	4 cut(s)	272, 446, 461, 491
BshNI	GGYRCC	1 cut(s)	372
BshTI	ACCGGT	2 cut(s)	327, 405
BsiEI	CGRYCG	2 cut(s)	273, 454
BsiHKAI	GWGCWC	3 cut(s)	290, 335, 405
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	9 cut(s)	201, 328, 336, 343, 363, 370, 376, 406, 450
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	6 cut(s)	268, 342, 349, 369, 382, 412
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	272, 446, 461, 491
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	290, 335, 405
Bsp13I	TCCGGA	1 cut(s)	335
Bsp143I	GATC	4 cut(s)	218, 293, 415, 498
Bsp68I	TCGCGA	1 cut(s)	456
BspANI	GGCC	4 cut(s)	272, 446, 461, 491
BspCNI	CTCAG	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	335
BspFNI	CGCG	4 cut(s)	185, 275, 318, 456
BspLI	GGNNCC	3 cut(s)	42, 213, 374
BspPI	GGATC	2 cut(s)	213, 423
BspT107I	GGYRCC	1 cut(s)	372
BsrFI	RCCGGY	4 cut(s)	327, 375, 405, 449
BssAI	RCCGGY	4 cut(s)	327, 375, 405, 449
BssECI	CCNNGG	2 cut(s)	183, 480
BssMI	GATC	4 cut(s)	218, 293, 415, 498
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	183, 480
BstF5I	GGATG	2 cut(s)	258, 344
BstFNI	CGCG	4 cut(s)	185, 275, 318, 456
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	4 cut(s)	221, 296, 418, 501
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	4 cut(s)	218, 293, 415, 498
BstMCI	CGRYCG	2 cut(s)	273, 454
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 117, 231, 278, 339
BstNSI	RCATGY	1 cut(s)	109
BstUI	CGCG	4 cut(s)	185, 275, 318, 456
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	272, 446, 461, 491
BtgI	CCRYGG	2 cut(s)	183, 480
BtsCI	GGATG	2 cut(s)	258, 344
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
BtuMI	TCGCGA	1 cut(s)	456
CciNI	GCGGCCGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	4 cut(s)	327, 375, 405, 449
Cfr13I	GGNCC	1 cut(s)	211
Cfr42I	CCGCGG	1 cut(s)	186
CseI	GACGC	4 cut(s)	52, 67, 248, 264
CspAI	ACCGGT	2 cut(s)	327, 405
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	9 cut(s)	5, 225, 272, 388, 432, 446, 461, 467, 491
CviKI_1	RGCY	9 cut(s)	5, 225, 272, 388, 432, 446, 461, 467, 491
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	220, 295, 417, 500
DpnII	GATC	4 cut(s)	218, 293, 415, 498
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	296
EclXI	CGGCCG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	211
Eco52I	CGGCCG	1 cut(s)	270
Eco72I	CACGTG	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	107, 464
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	105
FauI	CCCGC	2 cut(s)	100, 374
Fnu4HI	GCNGC	6 cut(s)	76, 183, 270, 273, 447, 492
FokI	GGATG	2 cut(s)	245, 351
Fsp4HI	GCNGC	6 cut(s)	76, 183, 270, 273, 447, 492
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	6 cut(s)	76, 183, 270, 273, 447, 492
HaeIII	GGCC	4 cut(s)	272, 446, 461, 491
HapII	CCGG	9 cut(s)	201, 328, 336, 343, 363, 370, 376, 406, 450
HgaI	GACGC	4 cut(s)	52, 67, 248, 264
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	3 cut(s)	67, 325, 360
HindII	GTYRAC	3 cut(s)	67, 325, 360
HinfI	GANTC	2 cut(s)	302, 366
HpaII	CCGG	9 cut(s)	201, 328, 336, 343, 363, 370, 376, 406, 450
Hpy166II	GTNNAC	3 cut(s)	67, 325, 360
Hpy188I	TCNGA	5 cut(s)	9, 253, 298, 400, 415
Hpy188III	TCNNGA	4 cut(s)	44, 214, 336, 455
Hpy8I	GTNNAC	3 cut(s)	67, 325, 360
Hpy99I	CGWCG	4 cut(s)	155, 242, 280, 310
HpyAV	CCTTC	2 cut(s)	13, 202
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 117, 231, 278, 339
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	316
Kpn2I	TCCGGA	1 cut(s)	335
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	218, 293, 415, 498
LmnI	GCTCC	3 cut(s)	247, 338, 385
LweI	GCATC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	220, 295, 417, 500
MboI	GATC	4 cut(s)	218, 293, 415, 498
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	290, 335, 405
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	8 cut(s)	3, 16, 145, 255, 259, 292, 306, 451
MroI	TCCGGA	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	9 cut(s)	201, 328, 336, 343, 363, 370, 376, 406, 450
MvnI	CGCG	4 cut(s)	185, 275, 318, 456
MwoI	GCNNNNNNNGC	5 cut(s)	84, 117, 231, 278, 339
NdeII	GATC	4 cut(s)	218, 293, 415, 498
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	42, 213, 374
NmuCI	GTSAC	1 cut(s)	79
NotI	GCGGCCGC	1 cut(s)	270
NruI	TCGCGA	1 cut(s)	456
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	366
PinAI	ACCGGT	2 cut(s)	327, 405
PkrI	GCNGC	6 cut(s)	77, 184, 271, 274, 448, 493
PleI	GAGTC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	211
PspCI	CACGTG	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	42, 213, 374
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	218
RruI	TCGCGA	1 cut(s)	456
SacII	CCGCGG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	6 cut(s)	76, 183, 270, 273, 447, 492
Sau3AI	GATC	4 cut(s)	218, 293, 415, 498
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	3 cut(s)	290, 335, 405
SetI	ASST	9 cut(s)	42, 53, 137, 213, 227, 354, 390, 426, 434
SfaNI	GCATC	1 cut(s)	329
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	237, 308
TauI	GCSGC	6 cut(s)	78, 185, 272, 275, 449, 494
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	2 cut(s)	44, 251
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.