Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

4043288 .. 4044715

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGAGAGAAGTGGGAAATGAAAAGAGATGAAATGGGACATCGATGTTGTGGAAAACACAAAGTGAAGAGAGGTCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCTTCGTTATATCACCACTCATGGTCATCCTAGTTGGAGTTCCGTTCCAAAGCTTGCCGGGTTGCAGAGATGTGGGAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGGCCTGATCTGAGGAGAGGTTCGTTTAATGAGGAAGAAGAGCAGATTATCATCGACGTACATCGTATTCTTGGTAACAAATGGGCTCAGATTGCTAAGCACTTACCTGGACGCACTGATAATGAAGTCAAGAACTTTTGGAACTCATGCATTAAGAAGAAACTTCTTTCTCAAGGCTTAGATCCTTCTACACATAATCTTATGCCTTCACACAAAAGATCTTCTTCTTCAAACAATAATAATATCCCCAAGCCAAACAAAACGACGTCCATCATGAAGAACCCTACTGATCTTGATCAATCAACCACTGCTTTTTCAATCACAAACATCAATCCACCCACTTCCACTAAACCAAACAAACTTAAATCTCCTAACCAGACTACAATCCCATCTCAAACCGTGATCCCTATCAATGATAACATGTCAAGTACTCAAACCATGATCCCTATCAATGATCCCATGTCAAGTCTTTTAGATGATGAGAATATGATTCCTCACTGGTCAGATGTTGATGGAATGGCGATCCACGAAGCTCCGATGTTGCCTAGTGATAAGGCAGTAGTGGGAGTGGATGATGATGATCTCAACATGGACATTTTGTTTAACACTCCTTCTTCTTCTGCTTTTGATCCTGATTTTGCTTCCATTTTCTCCTCTGCAATGTCTATCGATTTCAATCCCATGGATGATCTTGGCAGCTGGACCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

307

Amino Acids

34.74

Weight (kDa)

6.55

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	24 - 71	3.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	27 - 86	3.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	77 - 120	7.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	80 - 124	3.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
AclWI	GGATC	6 cut(s)	389, 610, 649, 662, 730, 836
AcyI	GRCGYC	1 cut(s)	479
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	273, 643
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	3 cut(s)	444, 531, 889
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	4 cut(s)	103, 157, 746, 912
AluI	AGCT	4 cut(s)	103, 157, 746, 912
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	6 cut(s)	389, 610, 649, 662, 730, 836
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	915
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	915
BanII	GRGCYC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	99
BccI	CCATC	3 cut(s)	491, 610, 719
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	2 cut(s)	135, 759
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	911
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	163, 321
Bme18I	GGWCC	1 cut(s)	915
BmgT120I	GGNCC	1 cut(s)	915
BmrFI	CCNGG	2 cut(s)	163, 321
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	163
Bsa29I	ATCGAT	2 cut(s)	43, 882
BsaBI	GATNNNNATC	6 cut(s)	263, 507, 620, 659, 792, 888
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	894
Bse1I	ACTGG	1 cut(s)	716
Bse3DI	GCAATG	1 cut(s)	879
Bse8I	GATNNNNATC	6 cut(s)	263, 507, 620, 659, 792, 888
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	2 cut(s)	43, 882
BseDI	CCNNGG	1 cut(s)	894
BseGI	GGATG	3 cut(s)	130, 790, 904
BseJI	GATNNNNATC	6 cut(s)	263, 507, 620, 659, 792, 888
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	215, 314
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	241, 856
BshFI	GGCC	1 cut(s)	217
BshVI	ATCGAT	2 cut(s)	43, 882
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	217
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	894
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	216, 313
BspDI	ATCGAT	2 cut(s)	43, 882
BspHI	TCATGA	1 cut(s)	486
BspPI	GGATC	6 cut(s)	389, 610, 649, 662, 730, 836
BspQI	GCTCTTC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	1 cut(s)	894
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	3 cut(s)	62, 176, 246
BstACI	GRCGYC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	5 cut(s)	212, 224, 300, 309, 391
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	3 cut(s)	130, 790, 904
BstMAI	GTCTC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	161, 319
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	394, 431
BstYI	RGATCY	2 cut(s)	394, 431
Bsu15I	ATCGAT	2 cut(s)	43, 882
BsuRI	GGCC	1 cut(s)	217
BsuTUI	ATCGAT	2 cut(s)	43, 882
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	3 cut(s)	130, 790, 904
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	327, 519, 709
Cac8I	GCNNGC	1 cut(s)	159
CciI	TCATGA	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	915
ClaI	ATCGAT	2 cut(s)	43, 882
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	272, 642
CviAII	CATG	8 cut(s)	125, 360, 487, 634, 652, 673, 802, 895
CviJI	RGCY	8 cut(s)	103, 157, 217, 299, 390, 466, 746, 912
CviKI_1	RGCY	8 cut(s)	103, 157, 217, 299, 390, 466, 746, 912
CviQI	GTAC	2 cut(s)	272, 642
DdeI	CTNAG	5 cut(s)	212, 224, 300, 309, 391
DraIII	CACNNNGTG	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	62, 176, 246
EarI	CTCTTC	3 cut(s)	62, 176, 246
Eco130I	CCWWGG	1 cut(s)	894
Eco147I	AGGCCT	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	915
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	894
EcoT22I	ATGCAT	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	8 cut(s)	128, 363, 490, 637, 655, 676, 805, 898
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	8 cut(s)	124, 359, 486, 633, 651, 672, 801, 894
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	910
FokI	GGATG	3 cut(s)	117, 797, 911
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	910
FspBI	CTAG	2 cut(s)	135, 759
GluI	GCNGC	1 cut(s)	910
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	333
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	8 cut(s)	128, 363, 490, 637, 655, 676, 805, 898
HindIII	AAGCTT	2 cut(s)	101, 155
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	225, 303, 718, 750
Hpy188III	TCNNGA	5 cut(s)	86, 343, 487, 506, 845
Hpy99I	CGWCG	2 cut(s)	272, 481
HpyAV	CCTTC	3 cut(s)	408, 429, 834
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	270, 479
HpyCH4V	TGCA	4 cut(s)	169, 189, 363, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	5 cut(s)	212, 224, 300, 309, 391
HpySE526I	ACGT	2 cut(s)	270, 479
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	8 cut(s)	128, 363, 490, 637, 655, 676, 805, 898
Ksp22I	TGATCA	1 cut(s)	508
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	751
LpnPI	CCDG	9 cut(s)	99, 175, 231, 306, 333, 602, 697, 858, 898
MaeI	CTAG	2 cut(s)	135, 759
MaeII	ACGT	2 cut(s)	270, 479
MaeIII	GTNAC	1 cut(s)	287
MflI	RGATCY	2 cut(s)	394, 431
MhlI	GDGCHC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	65, 82, 219, 224, 238, 717, 877
Mph1103I	ATGCAT	1 cut(s)	365
MseI	TTAA	5 cut(s)	194, 240, 366, 576, 816
MspA1I	CMGCKG	1 cut(s)	912
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	163, 321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	894
NlaIII	CATG	8 cut(s)	128, 363, 490, 637, 655, 676, 805, 898
NsiI	ATGCAT	1 cut(s)	365
NspI	RCATGY	1 cut(s)	637
PagI	TCATGA	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	217
PciI	ACATGT	1 cut(s)	633
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	703
PkrI	GCNGC	1 cut(s)	911
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	915
PsuI	RGATCY	2 cut(s)	394, 431
PvuII	CAGCTG	1 cut(s)	912
RsaI	GTAC	2 cut(s)	273, 643
RsaNI	GTAC	2 cut(s)	272, 642
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	194, 240, 366, 576, 816
SatI	GCNGC	1 cut(s)	910
Sau96I	GGNCC	1 cut(s)	915
ScaI	AGTACT	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	163, 321
SduI	GDGCHC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	915
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SseBI	AGGCCT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	135, 759
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	2 cut(s)	161, 319
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	273, 482
TaqI	TCGA	3 cut(s)	43, 267, 882
TatI	WGTACW	1 cut(s)	641
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	5 cut(s)	194, 240, 366, 576, 816
Tru9I	TTAA	5 cut(s)	194, 240, 366, 576, 816
TscAI	CASTG	3 cut(s)	334, 526, 716
TseI	GCWGC	1 cut(s)	909
TspDTI	ATGAA	4 cut(s)	35, 45, 351, 503
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	3 cut(s)	334, 526, 716
VpaK11BI	GGWCC	1 cut(s)	915
XceI	RCATGY	1 cut(s)	637
XspI	CTAG	2 cut(s)	135, 759
ZraI	GACGTC	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	643
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.