Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

6968789 .. 6970356

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGCCATCGCTGCTGTGGCAAACAGAAGGTCAAGAGAGGTCTGTGGTCACCTGAAGAAGATGAGAAGCTCATCAAACACATCACCATCCGCGGCCATGGCAGTTGGAGTTCTGTCCCAAAACATGCAGGCTTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGGTGGATAAACTATTTGAGACCAGAACTGAAAAGGGGCTCCTTTACTCCTGAGGAAGAACAGATTATCATTGATGTTCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTCCCTGGAAGGACAGACAATGAGGTGAAGAATTTCTGGAATTCATGCATTAAGAAAAAGCTCATGTCACAAGGTTTGGACCCAAAAACCCATAACTTGATCTCTTCTCATCAGAGATCATCTAATAAGATTGGAGGCAGCAGCAGACCACAACCCCATGACCGACAGAAACCCATTTCAGTAAATTTCACTACTGTGAATTCACAGAAGAAAAATTGTTCAGCAGAATTAAACTCGTCATCATCACCTATAGTAACATTGTACAATGCTCAACAACCTCCAATGGTCCAAACCATGGCCACACCACCCACTCATCAATATCATGATGATCAAAACCCTAATGCTGCTTGGACTAGTGTTAAGGATCCTACCTTCTATGAACCATCTGCAGAAAACATTTCCTCTTCATCATCTTCCTCAATGAACCTATCAGTGTTTGGGCTCTTGGATAATAGTAATTGCCTCTATGCTGCTGGTGCTCAGCCCTTTGAGGCCCCAAGAATATTATTAGAGGGAGAGCAATCGAAGGGATCAGAAGAAGTACTGCAGCAAGAAAAGGAAAACCTCTTGGAGATGGAAATGATCAAGGCTATTGATCAGGACATGGATGCTTCATTGATGGAGAGCTCTAGCTTTGACTTTAGCTTTTTGGAGTCTACACTTATGTCTACAGGAGTAACATCTCATGATCTGAACTCTATGGCTGATTTTGCATGGAACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.65

Weight (kDa)

7.19

Isoelectric Point (pI)

60.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	2 cut(s)	938, 950
AccII	CGCG	1 cut(s)	93
AciI	CCGC	2 cut(s)	91, 93
AclWI	GGATC	3 cut(s)	641, 654, 820
AcoI	YGGCCR	2 cut(s)	94, 579
AcsI	RAATTY	5 cut(s)	246, 313, 322, 466, 481
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	545, 825
AfiI	CCNNNNNNNGG	1 cut(s)	577
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	286
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	5 cut(s)	70, 343, 909, 915, 927
AluI	AGCT	5 cut(s)	70, 343, 909, 915, 927
Alw21I	GWGCWC	2 cut(s)	763, 911
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	3 cut(s)	641, 654, 820
AoxI	GGCC	4 cut(s)	4, 94, 579, 774
ApeKI	GCWGC	6 cut(s)	12, 420, 423, 626, 752, 829
ApoI	RAATTY	5 cut(s)	246, 313, 322, 466, 481
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	4 cut(s)	4, 361, 568, 775
AsuHPI	GGTGA	4 cut(s)	42, 76, 319, 519
AvaII	GGWCC	2 cut(s)	361, 568
AxyI	CCTNAGG	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	646
BanII	GRGCYC	4 cut(s)	203, 268, 726, 911
Bbv12I	GWGCWC	2 cut(s)	763, 911
BbvI	GCAGC	5 cut(s)	432, 435, 613, 739, 841
BccI	CCATC	6 cut(s)	15, 95, 255, 673, 850, 895
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	3 cut(s)	610, 864, 877
BcoDI	GTCTC	1 cut(s)	175
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	2 cut(s)	636, 912
BfmI	CTRYAG	4 cut(s)	531, 669, 827, 951
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	7 cut(s)	13, 94, 421, 424, 627, 753, 830
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	7 cut(s)	14, 95, 422, 425, 628, 754, 831
BmcAI	AGTACT	1 cut(s)	825
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	361, 568
BmgT120I	GGNCC	4 cut(s)	4, 361, 568, 775
BmiI	GGNNCC	4 cut(s)	202, 363, 648, 777
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	880
Bpu1102I	GCTNAGC	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	4 cut(s)	91, 97, 286, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse21I	CCTNAGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	4 cut(s)	91, 97, 286, 576
BseGI	GGATG	2 cut(s)	87, 895
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	3 cut(s)	204, 281, 776
BseXI	GCAGC	5 cut(s)	432, 435, 613, 739, 841
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	4 cut(s)	6, 96, 581, 776
BsiHKAI	GWGCWC	2 cut(s)	763, 911
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	6, 96, 581, 776
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	5 cut(s)	203, 268, 726, 763, 911
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
Bsp1720I	GCTNAGC	1 cut(s)	762
Bsp19I	CCATGG	2 cut(s)	97, 576
BspACI	CCGC	2 cut(s)	91, 93
BspANI	GGCC	4 cut(s)	6, 96, 581, 776
BspCNI	CTCAG	3 cut(s)	205, 280, 775
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	2 cut(s)	604, 967
BspLI	GGNNCC	4 cut(s)	202, 363, 648, 777
BspMAI	CTGCAG	2 cut(s)	673, 831
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	3 cut(s)	641, 654, 820
BspTNI	GGTCTC	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	543
BssECI	CCNNGG	4 cut(s)	91, 97, 286, 576
BssMI	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
BssT1I	CCWWGG	2 cut(s)	97, 576
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	2 cut(s)	391, 691
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	130, 134
BstDEI	CTNAG	3 cut(s)	213, 267, 762
BstDSI	CCRYGG	3 cut(s)	91, 97, 576
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	87, 895
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	8 cut(s)	384, 401, 613, 649, 815, 867, 880, 973
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 18, 99, 153, 272, 758, 992
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	4 cut(s)	531, 669, 827, 951
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	5 cut(s)	432, 435, 613, 739, 841
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	4 cut(s)	6, 96, 581, 776
BtgI	CCRYGG	3 cut(s)	91, 97, 576
BtsCI	GGATG	2 cut(s)	87, 895
BtsIMutI	CAGTG	1 cut(s)	720
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	130, 134
CciI	TCATGA	2 cut(s)	604, 967
Cfr13I	GGNCC	4 cut(s)	4, 361, 568, 775
Cfr42I	CCGCGG	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	544, 824
CviQI	GTAC	2 cut(s)	544, 824
DdeI	CTNAG	3 cut(s)	213, 267, 762
DpnI	GATC	8 cut(s)	383, 400, 612, 648, 814, 866, 879, 972
DpnII	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
EaeI	YGGCCR	2 cut(s)	94, 579
Eam1104I	CTCTTC	2 cut(s)	391, 691
EarI	CTCTTC	2 cut(s)	391, 691
Ecl136II	GAGCTC	1 cut(s)	909
Eco130I	CCWWGG	2 cut(s)	97, 576
Eco24I	GRGCYC	4 cut(s)	203, 268, 726, 911
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	361, 568
Eco53kI	GAGCTC	1 cut(s)	909
Eco57I	CTGAAG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	775
EcoO65I	GGTNACC	1 cut(s)	48
EcoRI	GAATTC	2 cut(s)	322, 481
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	97, 576
EcoT22I	ATGCAT	1 cut(s)	332
EcoT38I	GRGCYC	4 cut(s)	203, 268, 726, 911
ErhI	CCWWGG	2 cut(s)	97, 576
FaqI	GGGAC	1 cut(s)	101
FbaI	TGATCA	3 cut(s)	610, 864, 877
FblI	GTMKAC	2 cut(s)	938, 950
Fnu4HI	GCNGC	7 cut(s)	13, 94, 421, 424, 627, 753, 830
FokI	GGATG	2 cut(s)	74, 902
FriOI	GRGCYC	4 cut(s)	203, 268, 726, 911
Fsp4HI	GCNGC	7 cut(s)	13, 94, 421, 424, 627, 753, 830
FspBI	CTAG	2 cut(s)	636, 912
GluI	GCNGC	7 cut(s)	13, 94, 421, 424, 627, 753, 830
HaeIII	GGCC	4 cut(s)	6, 96, 581, 776
HinfI	GANTC	1 cut(s)	935
HphI	GGTGA	4 cut(s)	42, 76, 319, 519
Hpy166II	GTNNAC	3 cut(s)	241, 939, 951
Hpy188I	TCNGA	4 cut(s)	270, 396, 817, 975
Hpy188III	TCNNGA	6 cut(s)	34, 212, 319, 605, 881, 968
Hpy8I	GTNNAC	3 cut(s)	241, 939, 951
HpyAV	CCTTC	4 cut(s)	22, 285, 664, 802
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	7 cut(s)	128, 136, 156, 330, 671, 829, 995
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 18, 99, 153, 272, 758, 992
HpyF3I	CTNAG	3 cut(s)	213, 267, 762
Ksp22I	TGATCA	3 cut(s)	610, 864, 877
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	5 cut(s)	432, 435, 613, 739, 841
LweI	GCATC	1 cut(s)	880
MaeI	CTAG	2 cut(s)	636, 912
MaeIII	GTNAC	4 cut(s)	48, 348, 535, 958
MalI	GATC	8 cut(s)	383, 400, 612, 648, 814, 866, 879, 972
MboI	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
MboII	GAAGA	9 cut(s)	68, 71, 230, 322, 378, 502, 678, 687, 830
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	5 cut(s)	203, 268, 726, 763, 911
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	8 cut(s)	246, 313, 322, 466, 481, 496, 509, 739
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	944
MmeI	TCCRAC	1 cut(s)	86
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	3 cut(s)	333, 512, 642
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	7 cut(s)	12, 18, 99, 153, 272, 758, 992
NcoI	CCATGG	2 cut(s)	97, 576
NdeII	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
NlaIV	GGNNCC	4 cut(s)	202, 363, 648, 777
NmuCI	GTSAC	2 cut(s)	48, 348
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	2 cut(s)	604, 967
PdmI	GAANNNNTTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	7 cut(s)	14, 95, 422, 425, 628, 754, 831
PleI	GAGTC	1 cut(s)	943
PpsI	GAGTC	1 cut(s)	943
Psp124BI	GAGCTC	1 cut(s)	911
Psp6I	CCWGG	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	4 cut(s)	202, 363, 648, 777
PspPI	GGNCC	4 cut(s)	4, 361, 568, 775
PstI	CTGCAG	2 cut(s)	673, 831
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	2 cut(s)	545, 825
RsaNI	GTAC	2 cut(s)	544, 824
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	911
SacII	CCGCGG	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	333, 512, 642
SatI	GCNGC	7 cut(s)	13, 94, 421, 424, 627, 753, 830
Sau3AI	GATC	8 cut(s)	381, 398, 610, 646, 812, 864, 877, 970
Sau96I	GGNCC	4 cut(s)	4, 361, 568, 775
ScaI	AGTACT	1 cut(s)	825
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	5 cut(s)	203, 268, 726, 763, 911
SfaNI	GCATC	1 cut(s)	880
SfcI	CTRYAG	4 cut(s)	531, 669, 827, 951
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SinI	GGWCC	2 cut(s)	361, 568
SmiMI	CAYNNNNRTG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	8 cut(s)	246, 313, 322, 466, 481, 496, 509, 739
SsiI	CCGC	2 cut(s)	91, 93
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	2 cut(s)	636, 912
SstI	GAGCTC	1 cut(s)	911
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	97, 576
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	806
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	8 cut(s)	246, 313, 322, 466, 481, 496, 509, 739
TatI	WGTACW	2 cut(s)	543, 823
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	3 cut(s)	333, 512, 642
Tru9I	TTAA	3 cut(s)	333, 512, 642
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	2 cut(s)	48, 348
TseI	GCWGC	6 cut(s)	12, 420, 423, 626, 752, 829
Tsp45I	GTSAC	2 cut(s)	48, 348
TspDTI	ATGAA	5 cut(s)	315, 675, 678, 719, 885
TspRI	CASTG	1 cut(s)	720
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	361, 568
XapI	RAATTY	5 cut(s)	246, 313, 322, 466, 481
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmiI	GTMKAC	2 cut(s)	938, 950
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	2 cut(s)	636, 912
ZrmI	AGTACT	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.