Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

17060855 .. 17062758

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG163700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGCCATCGGTGCTGTGGGAAACATAAGGTTAAGAGAGGTCTTTGGTCGCCGGAAGAAGACGACAAGCTCATCAAACATGTCACCACCCACGGCCATGGCAGTTGGAGTTCTGTCCCTAAACATGCAGGGTTGGAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTTAAGAGAGGCTCCTTTACTTCTGAAGAAGAACAGATTATTATTGATGTCCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCGAAACATCTACCTGGAAGGACAGACAATGAAGTGAAGAATTTCTGGAACTCTTGCATTAAGAAGAAGCTCATGTCACAAGGTTTGGATCCGCAGACCCATAACTTGATCTCTTCTCATAAAAGGTCAGTAGCTTCTAATAAGACTGCAGGCAGCAACGCCAAATTACAATCCCACATCGATCAAAAGAGACCAGTTTTCACTGTGAACAATATGTCACAGATGATAGATTCTTCAACGGAAATTAATTACTCAATTTCACCACCTATTGTACCATTGTCCAATGCTCAACCTCCCACTGTTCAACCCATAATGGCCACACCCACAGATAATCAATATCTTATTCAAAACCCTAATTCCGGCTGGACTAGTGTTACCGATATTCCAACCTTTCCCGATAGCACACTGAACATCACCTCTGCATCGTCTTCCTCAGCCTTTGGGCACTTGGATGGTAGTAATTGCATCTGGGCAACTGGTGCTGATCCCTTTGAAGCAGCACCAGGAGCAATGGAGCTGCAGGGAGAGCAGTCAGAAGGACAAGTAGTACAAGTAGAGCAAGAAAAGGAAAAGCTCTTGGAGATGGAAATTAAGGCTATGCAGGACATGGATATTTCTGCTCCGTTTGACCAGAGCTCAAGCTTTGATTTTAGCCTTGTGGAGTATTACTCTACACTAATGTCTGGAGTCGTGCCTCATGATCATGTCAACTATTCTGCCGCTGACTTTACATGGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

37.68

Weight (kDa)

6.27

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	5.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 114	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	2 cut(s)	365, 993
AclWI	GGATC	3 cut(s)	356, 369, 752
AcoI	YGGCCR	2 cut(s)	94, 588
AcsI	RAATTY	2 cut(s)	246, 313
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	546, 822
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	510, 578, 620, 767
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	2 cut(s)	286, 775
AluBI	AGCT	7 cut(s)	70, 343, 407, 790, 847, 909, 915
AluI	AGCT	7 cut(s)	70, 343, 407, 790, 847, 909, 915
Alw21I	GWGCWC	1 cut(s)	911
Alw26I	GTCTC	2 cut(s)	175, 457
AlwI	GGATC	3 cut(s)	356, 369, 752
AoxI	GGCC	3 cut(s)	4, 94, 588
ApeKI	GCWGC	3 cut(s)	426, 770, 790
ApoI	RAATTY	2 cut(s)	246, 313
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	76, 525, 679
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	590
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	268, 911
BbsI	GAAGAC	2 cut(s)	66, 693
Bbv12I	GWGCWC	1 cut(s)	911
BbvCI	CCTCAGC	1 cut(s)	706
BbvI	GCAGC	3 cut(s)	438, 777, 782
BccI	CCATC	5 cut(s)	15, 159, 255, 719, 850
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	288, 777
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	2 cut(s)	175, 457
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	2 cut(s)	420, 791
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	4 cut(s)	427, 771, 791, 993
BlsI	GCNGC	4 cut(s)	428, 772, 792, 994
Bme1390I	CCNGG	2 cut(s)	288, 777
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	202, 363
BmrFI	CCNGG	2 cut(s)	288, 777
BmsI	GCATC	2 cut(s)	704, 747
BpiI	GAAGAC	2 cut(s)	66, 693
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	1 cut(s)	706
BpuEI	CTTGAG	1 cut(s)	895
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	175, 457
BsaJI	CCNNGG	2 cut(s)	91, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	467, 754
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	288, 777
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	91, 97
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	281, 720
BseNI	ACTGG	2 cut(s)	467, 754
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	438, 777, 782
BshFI	GGCC	3 cut(s)	6, 96, 590
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	911
BsiSI	CCGG	2 cut(s)	53, 633
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	2 cut(s)	175, 457
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	6, 96, 590
Bso31I	GGTCTC	2 cut(s)	175, 457
Bsp1286I	GDGCHC	3 cut(s)	268, 720, 911
Bsp143I	GATC	5 cut(s)	361, 381, 454, 757, 973
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	365, 993
BspANI	GGCC	3 cut(s)	6, 96, 590
BspCNI	CTCAG	2 cut(s)	280, 719
BspDI	ATCGAT	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	2 cut(s)	202, 363
BspMAI	CTGCAG	2 cut(s)	424, 795
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	3 cut(s)	356, 369, 752
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	175, 457
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	467, 754
BssECI	CCNNGG	2 cut(s)	91, 97
BssMI	GATC	5 cut(s)	361, 381, 454, 757, 973
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	2 cut(s)	288, 777
Bst4CI	ACNGT	2 cut(s)	478, 574
Bst6I	CTCTTC	1 cut(s)	391
BstAFI	CTTAAG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	267, 706
BstDSI	CCRYGG	2 cut(s)	91, 97
BstF5I	GGATG	1 cut(s)	730
BstKTI	GATC	5 cut(s)	364, 384, 457, 760, 976
BstMAI	GTCTC	2 cut(s)	175, 457
BstMBI	GATC	5 cut(s)	361, 381, 454, 757, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 272, 752, 779, 799
BstNI	CCWGG	2 cut(s)	288, 777
BstNSI	RCATGY	2 cut(s)	83, 128
BstSCI	CCNGG	2 cut(s)	286, 775
BstSFI	CTRYAG	2 cut(s)	420, 791
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	438, 777, 782
BstV2I	GAAGAC	2 cut(s)	66, 693
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	6, 96, 590
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	2 cut(s)	91, 97
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	3 cut(s)	474, 570, 677
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	970
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	545, 821
CviAII	CATG	8 cut(s)	80, 98, 125, 346, 880, 971, 977, 1005
CviQI	GTAC	2 cut(s)	545, 821
DdeI	CTNAG	2 cut(s)	267, 706
DpnI	GATC	5 cut(s)	363, 383, 456, 759, 975
DpnII	GATC	5 cut(s)	361, 381, 454, 757, 973
EaeI	YGGCCR	2 cut(s)	94, 588
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	909
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	268, 911
Eco31I	GGTCTC	2 cut(s)	175, 457
Eco53kI	GAGCTC	1 cut(s)	909
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	909
EcoRII	CCWGG	2 cut(s)	286, 775
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	2 cut(s)	268, 911
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	8 cut(s)	79, 97, 124, 345, 879, 970, 976, 1004
FbaI	TGATCA	1 cut(s)	973
Fnu4HI	GCNGC	4 cut(s)	427, 771, 791, 993
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	2 cut(s)	268, 911
Fsp4HI	GCNGC	4 cut(s)	427, 771, 791, 993
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	4 cut(s)	427, 771, 791, 993
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	6, 96, 590
HapII	CCGG	2 cut(s)	53, 633
Hin1II	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
HincII	GTYRAC	1 cut(s)	982
HindII	GTYRAC	1 cut(s)	982
HindIII	AAGCTT	1 cut(s)	913
HinfI	GANTC	2 cut(s)	503, 960
HpaII	CCGG	2 cut(s)	53, 633
HphI	GGTGA	3 cut(s)	76, 525, 679
Hpy166II	GTNNAC	3 cut(s)	241, 481, 982
Hpy188I	TCNGA	3 cut(s)	214, 270, 808
Hpy188III	TCNNGA	4 cut(s)	319, 668, 957, 971
Hpy8I	GTNNAC	3 cut(s)	241, 481, 982
HpyAV	CCTTC	2 cut(s)	285, 803
HpyCH4III	ACNGT	2 cut(s)	478, 574
HpyCH4V	TGCA	8 cut(s)	128, 156, 330, 422, 695, 738, 793, 874
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 272, 752, 779, 799
HpyF3I	CTNAG	2 cut(s)	267, 706
Hsp92II	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	5 cut(s)	361, 381, 454, 757, 973
LmnI	GCTCC	4 cut(s)	206, 779, 787, 898
Lsp1109I	GCAGC	3 cut(s)	438, 777, 782
LweI	GCATC	2 cut(s)	704, 747
MaeI	CTAG	1 cut(s)	642
MaeIII	GTNAC	4 cut(s)	82, 348, 489, 646
MalI	GATC	5 cut(s)	363, 383, 456, 759, 975
MboI	GATC	5 cut(s)	361, 381, 454, 757, 973
MboII	GAAGA	9 cut(s)	68, 71, 227, 230, 322, 349, 378, 498, 693
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	268, 720, 911
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	9 cut(s)	246, 313, 437, 516, 520, 528, 628, 733, 861
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	3 cut(s)	86, 114, 683
MnlI	CCTC	7 cut(s)	32, 132, 191, 576, 700, 715, 978
Mox20I	TGGCCA	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	5 cut(s)	33, 192, 333, 519, 864
MslI	CAYNNNNRTG	3 cut(s)	96, 723, 975
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	995
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	2 cut(s)	53, 633
MspR9I	CCNGG	2 cut(s)	288, 777
MvaI	CCWGG	2 cut(s)	288, 777
MwoI	GCNNNNNNNGC	5 cut(s)	12, 272, 752, 779, 799
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	361, 381, 454, 757, 973
NlaIII	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
NlaIV	GGNNCC	2 cut(s)	202, 363
NmuCI	GTSAC	3 cut(s)	82, 348, 489
NspI	RCATGY	2 cut(s)	83, 128
PagI	TCATGA	1 cut(s)	970
PciI	ACATGT	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	428, 772, 792, 994
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
PscI	ACATGT	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	911
Psp6I	CCWGG	2 cut(s)	286, 775
PspGI	CCWGG	2 cut(s)	286, 775
PspN4I	GGNNCC	2 cut(s)	202, 363
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	424, 795
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	2 cut(s)	546, 822
RsaNI	GTAC	2 cut(s)	545, 821
RseI	CAYNNNNRTG	3 cut(s)	96, 723, 975
SacI	GAGCTC	1 cut(s)	911
SaqAI	TTAA	5 cut(s)	33, 192, 333, 519, 864
SatI	GCNGC	4 cut(s)	427, 771, 791, 993
Sau3AI	GATC	5 cut(s)	361, 381, 454, 757, 973
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	2 cut(s)	288, 777
SduI	GDGCHC	3 cut(s)	268, 720, 911
SfaNI	GCATC	2 cut(s)	704, 747
SfcI	CTRYAG	2 cut(s)	420, 791
SmiMI	CAYNNNNRTG	3 cut(s)	96, 723, 975
SmlI	CTYRAG	2 cut(s)	191, 910
SmoI	CTYRAG	2 cut(s)	191, 910
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	9 cut(s)	246, 313, 437, 516, 520, 528, 628, 733, 861
SsiI	CCGC	2 cut(s)	365, 993
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	1 cut(s)	911
StyD4I	CCNGG	2 cut(s)	286, 775
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	478, 574
TaqI	TCGA	1 cut(s)	453
TasI	AATT	9 cut(s)	246, 313, 437, 516, 520, 528, 628, 733, 861
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	995
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	5 cut(s)	33, 192, 333, 519, 864
Tru9I	TTAA	5 cut(s)	33, 192, 333, 519, 864
TscAI	CASTG	3 cut(s)	481, 577, 684
TseFI	GTSAC	3 cut(s)	82, 348, 489
TseI	GCWGC	3 cut(s)	426, 770, 790
Tsp45I	GTSAC	3 cut(s)	82, 348, 489
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	2 cut(s)	527, 885
TspRI	CASTG	3 cut(s)	481, 577, 684
Vha464I	CTTAAG	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	2 cut(s)	246, 313
XceI	RCATGY	2 cut(s)	83, 128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.