Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

8410339 .. 8412017

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGCCATCGGTGCTGTGGCAAACATAAGGTGAAGAGAGGTCTTTGGTCGCCGGAAGAAGACGACAAGCTCATCAAACATGTCACCACCCACGGCCATGGAAGTTGGAGTTCTGTCCCTAAAAACGCAGGATTGGAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTCAAGAGAGGCTCCTTTACTTCTGAAGAAGAACAGATCATTATTGATGTCCACAGAATATTAGGCAACAGATGGGCTCAGATAGCAAAGCATCTACCGGGAAGGACAGACAATGAAGTGAAGAATTTCTGGAACTCTTGCATTAAGAAGAAGCTCATGTCACAAGGTTTGGACCCGCAGACCCATAACTTGATCTCTTCTCATAAAAGGTCAGTAGCTTCTAATAAGACTGCAGGCAGCAACGCCAAAACACAATCCCATATCGATCAAGAGAGACCAGTTTTCACAGTGAACAATATGTCACAGAAGACAGATTCTTCCACGGAAATGAACTACTCAATGTCAACACCTATTGTACCATTGTTGAATGCTCAACCTCCCACTGTTCAATCCATGATGGCTTCACCCACTAATAATAATCACTATCTTGTTCAAAACCCTAATTCCGGTTGGAATAATGTTTCCGATATCCCAACCTTTCCGGACAGCACACTCAACATGTCCTCTGCATCGTCTTCCTCGATGTTCGGTCACATGGATGATAGTAATTGCATCTGGGCAGCTGGTGCTGAGGCCTATGTACCAGCACCGGGAGCAATGGAGGTGCAGGGAGAACAGTCAAAGGGACAAGTAGTACAAGTGCATCAAGAAAAAGAAAAGCTCTTGGAGATGGAAATGGAGGCTATGCAGGACATGGAAATTGCTGCTTCCTTTGATCAGTGTTCAAGCTTTGACTATAGCCTTGTGGAGTATTACTCTACAATGATGTCTGGAGTCGCGCCTCATGATCATGTCAACTACTCTGCCGCTGATTTTACATGGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

340

Amino Acids

37.96

Weight (kDa)

6.43

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	3.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	5.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 114	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccII	CGCG	1 cut(s)	968
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	2 cut(s)	365, 996
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	546, 771, 825
AfiI	CCNNNNNNNGG	2 cut(s)	635, 779
AflIII	ACRYGT	2 cut(s)	79, 687
AgsI	TTSAA	4 cut(s)	556, 578, 623, 915
AluBI	AGCT	6 cut(s)	70, 343, 407, 752, 850, 918
AluI	AGCT	6 cut(s)	70, 343, 407, 752, 850, 918
Alw26I	GTCTC	2 cut(s)	175, 457
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	3 cut(s)	4, 94, 762
ApeKI	GCWGC	3 cut(s)	426, 749, 893
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	970
AspS9I	GGNCC	2 cut(s)	4, 361
AsuC2I	CCSGG	2 cut(s)	288, 780
AsuHPI	GGTGA	3 cut(s)	43, 76, 585
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	3 cut(s)	66, 503, 696
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	438, 761, 880
BccI	CCATC	5 cut(s)	15, 159, 255, 580, 853
BceAI	ACGGC	1 cut(s)	109
BclI	TGATCA	2 cut(s)	904, 976
BcnI	CCSGG	2 cut(s)	288, 780
BcoDI	GTCTC	2 cut(s)	175, 457
BfmI	CTRYAG	2 cut(s)	420, 925
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	4 cut(s)	427, 750, 894, 996
BlsI	GCNGC	4 cut(s)	428, 751, 895, 997
Bme1390I	CCNGG	2 cut(s)	288, 780
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	4, 361
BmiI	GGNNCC	2 cut(s)	202, 363
BmrFI	CCNGG	2 cut(s)	288, 780
BmsI	GCATC	4 cut(s)	289, 707, 750, 841
BpiI	GAAGAC	3 cut(s)	66, 503, 696
BplI	GAGNNNNNCTC	2 cut(s)	929, 961
BpmI	CTGGAG	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	2 cut(s)	288, 780
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	175, 457
BsaJI	CCNNGG	3 cut(s)	91, 97, 510
BsaWI	WCCGGW	2 cut(s)	635, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 779
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	670
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	91, 97, 510
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	2 cut(s)	635, 779
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	2 cut(s)	281, 750
BseNI	ACTGG	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	438, 761, 880
BsgI	GTGCAG	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	968
BshFI	GGCC	3 cut(s)	6, 96, 764
BshVI	ATCGAT	1 cut(s)	453
BsiSI	CCGG	5 cut(s)	53, 287, 636, 671, 779
BslFI	GGGAC	2 cut(s)	101, 828
BslI	CCNNNNNNNGG	2 cut(s)	635, 779
BsmAI	GTCTC	2 cut(s)	175, 457
BsmFI	GGGAC	2 cut(s)	101, 828
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	3 cut(s)	6, 96, 764
Bso31I	GGTCTC	2 cut(s)	175, 457
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	5 cut(s)	225, 381, 454, 904, 976
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	365, 996
BspANI	GGCC	3 cut(s)	6, 96, 764
BspCNI	CTCAG	2 cut(s)	280, 751
BspDI	ATCGAT	1 cut(s)	453
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	968
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	2 cut(s)	202, 363
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	147
BspTNI	GGTCTC	2 cut(s)	175, 457
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	91, 97, 510
BssMI	GATC	5 cut(s)	225, 381, 454, 904, 976
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	3 cut(s)	478, 574, 807
Bst6I	CTCTTC	2 cut(s)	29, 391
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	267, 759
BstDSI	CCRYGG	3 cut(s)	91, 97, 510
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	968
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	5 cut(s)	228, 384, 457, 907, 979
BstMAI	GTCTC	2 cut(s)	175, 457
BstMBI	GATC	5 cut(s)	225, 381, 454, 904, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 272, 755, 782
BstNSI	RCATGY	2 cut(s)	83, 691
BstSCI	CCNGG	2 cut(s)	286, 778
BstSFI	CTRYAG	2 cut(s)	420, 925
BstUI	CGCG	1 cut(s)	968
BstV1I	GCAGC	3 cut(s)	438, 761, 880
BstV2I	GAAGAC	3 cut(s)	66, 503, 696
BstXI	CCANNNNNNTGG	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	6, 96, 764
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	3 cut(s)	91, 97, 510
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	3 cut(s)	483, 570, 914
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	970
Cfr13I	GGNCC	2 cut(s)	4, 361
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	545, 770, 824
CviQI	GTAC	3 cut(s)	545, 770, 824
DdeI	CTNAG	2 cut(s)	267, 759
DpnI	GATC	5 cut(s)	227, 383, 456, 906, 978
DpnII	GATC	5 cut(s)	225, 381, 454, 904, 976
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	29, 391
EarI	CTCTTC	2 cut(s)	29, 391
Eco130I	CCWWGG	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	764
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	2 cut(s)	175, 457
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	97
FaqI	GGGAC	2 cut(s)	101, 828
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	904, 976
Fnu4HI	GCNGC	4 cut(s)	427, 750, 894, 996
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	4 cut(s)	427, 750, 894, 996
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	4 cut(s)	427, 750, 894, 996
GsuI	CTGGAG	1 cut(s)	981
HaeIII	GGCC	3 cut(s)	6, 96, 764
HapII	CCGG	5 cut(s)	53, 287, 636, 671, 779
HhaI	GCGC	1 cut(s)	970
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HincII	GTYRAC	2 cut(s)	534, 985
HindII	GTYRAC	2 cut(s)	534, 985
HindIII	AAGCTT	1 cut(s)	916
HinfI	GANTC	2 cut(s)	503, 963
HpaII	CCGG	5 cut(s)	53, 287, 636, 671, 779
HphI	GGTGA	3 cut(s)	43, 76, 585
Hpy166II	GTNNAC	4 cut(s)	241, 481, 534, 985
Hpy188I	TCNGA	3 cut(s)	214, 270, 655
Hpy188III	TCNNGA	7 cut(s)	193, 319, 458, 671, 836, 960, 974
Hpy8I	GTNNAC	4 cut(s)	241, 481, 534, 985
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	3 cut(s)	478, 574, 807
HpyCH4V	TGCA	8 cut(s)	156, 330, 422, 698, 741, 796, 832, 877
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 272, 755, 782
HpyF3I	CTNAG	2 cut(s)	267, 759
HspAI	GCGC	1 cut(s)	968
Kpn2I	TCCGGA	1 cut(s)	670
Ksp22I	TGATCA	2 cut(s)	904, 976
Kzo9I	GATC	5 cut(s)	225, 381, 454, 904, 976
LmnI	GCTCC	2 cut(s)	206, 782
Lsp1109I	GCAGC	3 cut(s)	438, 761, 880
LweI	GCATC	4 cut(s)	289, 707, 750, 841
MaeIII	GTNAC	4 cut(s)	82, 348, 489, 719
MalI	GATC	5 cut(s)	227, 383, 456, 906, 978
MboI	GATC	5 cut(s)	225, 381, 454, 904, 976
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	4 cut(s)	313, 631, 736, 888
MlyI	GAGTC	1 cut(s)	972
MmeI	TCCRAC	2 cut(s)	86, 620
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	4 cut(s)	96, 515, 726, 978
MspA1I	CMGCKG	2 cut(s)	752, 998
MspI	CCGG	5 cut(s)	53, 287, 636, 671, 779
MspR9I	CCNGG	2 cut(s)	288, 780
Mva1269I	GAATGC	1 cut(s)	562
MvnI	CGCG	1 cut(s)	968
MwoI	GCNNNNNNNGC	4 cut(s)	12, 272, 755, 782
NciI	CCSGG	2 cut(s)	288, 780
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	225, 381, 454, 904, 976
NlaIV	GGNNCC	2 cut(s)	202, 363
NmuCI	GTSAC	4 cut(s)	82, 348, 489, 719
NspI	RCATGY	2 cut(s)	83, 691
PagI	TCATGA	1 cut(s)	973
PceI	AGGCCT	1 cut(s)	764
PciI	ACATGT	2 cut(s)	79, 687
PcsI	WCGNNNNNNNCGW	1 cut(s)	707
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	428, 751, 895, 997
PleI	GAGTC	1 cut(s)	971
PpsI	GAGTC	1 cut(s)	971
PscI	ACATGT	2 cut(s)	79, 687
PspN4I	GGNNCC	2 cut(s)	202, 363
PspPI	GGNCC	2 cut(s)	4, 361
PstI	CTGCAG	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	546, 771, 825
RsaNI	GTAC	3 cut(s)	545, 770, 824
RseI	CAYNNNNRTG	4 cut(s)	96, 515, 726, 978
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	4 cut(s)	427, 750, 894, 996
Sau3AI	GATC	5 cut(s)	225, 381, 454, 904, 976
Sau96I	GGNCC	2 cut(s)	4, 361
SchI	GAGTC	1 cut(s)	972
ScrFI	CCNGG	2 cut(s)	288, 780
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	4 cut(s)	289, 707, 750, 841
SfcI	CTRYAG	2 cut(s)	420, 925
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	4 cut(s)	96, 515, 726, 978
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	313, 631, 736, 888
SseBI	AGGCCT	1 cut(s)	764
SsiI	CCGC	2 cut(s)	365, 996
SspI	AATATT	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	764
StyD4I	CCNGG	2 cut(s)	286, 778
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	478, 574, 807
TaqI	TCGA	2 cut(s)	453, 710
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	4 cut(s)	313, 631, 736, 888
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	1 cut(s)	998
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	483, 577, 914
TseFI	GTSAC	4 cut(s)	82, 348, 489, 719
TseI	GCWGC	3 cut(s)	426, 749, 893
Tsp45I	GTSAC	4 cut(s)	82, 348, 489, 719
TspDTI	ATGAA	2 cut(s)	318, 533
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	483, 577, 914
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	2 cut(s)	83, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.