Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

17396159 .. 17398049

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG178900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGCCATCGGTGCTGTGGGAAACATAAGGTTAAGAGAGGTCTTTGGTCACCGGAAGAAGACGACAAGCTCATCAAACATGTCACCACCCACGGCCATGGCAGTTGGAGTTCTGTCCCTAAACATGCAGGGTTGGAGAGGTGCGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTAAAGAGAGGCTCCTTTACGTCTGAAGAAGAACAGATTATTATTGATGTCCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCGAAGCATCTACCTGGAAGGACAGACAATGAAGTGAAGAATTTCTGGAACTCTTGCATTAAGAAGAAGCTCATGTCACAAGGTTTGGACCCGCAGACCCATAACTTGATCTCTTCTCATAAAAGGTCAGTAGCTTCTAATAAGATTGCAGGCAGTAACGCCAAATTACAATCCCACATCGATCAAAAGAGACCAGTTTTCACTGTGAACAATATGTCACAGATAATAGATTCTTCAACGGAAATTAATTACTCTATTTCACCACCTATTGTACCATTTTCCAATGCTCAACCTCCCACTGTTCAACCCATAATGGCCACACCCATAGATAATCAATATCTTGTTCACAACCCTAATTCCGGCTGGACTAGTGTTACCGATATTCCAACCTTTCCCGATAGCACACAGAGCATCACCTCTGCATCTTCTTCCTCAGCGTTTGGGCACTTGGATGGTAGTAATTGCATCTGGGCAGCTGGTGCCGATCCCTTTGAAGCAGCACCAGGAGCAATGGAGCTGCAGGGAGAGCAGTCAAAAGGACAAGTAGTACAAGTAGAGCAAGAAAAGGAAAAGCTCCTGGAGATGGAAATGAAGGCTATGCAGGACATGGATATTGCTGCTTCGTTTGATCAGAGTTCAAGCTTTGATTTTAGCCTTGTGGAGTATTGCTCTACACTAATGTCTGGAGTCGTGCCTCATGATCATGTCAACTATTCTGCCGCTGACTTTACATGGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

37.6

Weight (kDa)

6.56

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	5.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 114	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	752
AciI	CCGC	3 cut(s)	144, 365, 993
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	94, 588
AcsI	RAATTY	2 cut(s)	246, 313
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	546, 822
AfiI	CCNNNNNNNGG	2 cut(s)	632, 856
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	510, 578, 767, 912
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	3 cut(s)	286, 775, 849
AluBI	AGCT	7 cut(s)	70, 343, 407, 749, 790, 847, 915
AluI	AGCT	7 cut(s)	70, 343, 407, 749, 790, 847, 915
Alw26I	GTCTC	2 cut(s)	175, 457
AlwI	GGATC	1 cut(s)	752
AoxI	GGCC	3 cut(s)	4, 94, 588
ApeKI	GCWGC	4 cut(s)	746, 770, 790, 890
ApoI	RAATTY	2 cut(s)	246, 313
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	4, 361
AsuHPI	GGTGA	4 cut(s)	42, 76, 525, 679
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	758, 777, 782, 877
BccI	CCATC	5 cut(s)	15, 159, 255, 719, 850
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	3 cut(s)	288, 777, 851
BclI	TGATCA	2 cut(s)	901, 973
BcoDI	GTCTC	2 cut(s)	175, 457
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	1 cut(s)	642
BfmI	CTRYAG	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	5 cut(s)	747, 771, 791, 891, 993
BlsI	GCNGC	5 cut(s)	748, 772, 792, 892, 994
Bme1390I	CCNGG	3 cut(s)	288, 777, 851
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	4, 361
BmiI	GGNNCC	3 cut(s)	202, 363, 754
BmrFI	CCNGG	3 cut(s)	288, 777, 851
BmsI	GCATC	4 cut(s)	289, 693, 704, 747
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
BpmI	CTGGAG	2 cut(s)	872, 978
Bpu10I	CCTNAGC	1 cut(s)	706
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	175, 457
BsaJI	CCNNGG	2 cut(s)	91, 97
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 856
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	3 cut(s)	288, 777, 851
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	91, 97
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	632, 856
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	281, 720
BseNI	ACTGG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	4 cut(s)	758, 777, 782, 877
BshFI	GGCC	3 cut(s)	6, 96, 590
BshNI	GGYRCC	1 cut(s)	752
BshVI	ATCGAT	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	53, 633
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	632, 856
BsmAI	GTCTC	2 cut(s)	175, 457
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	6, 96, 590
Bso31I	GGTCTC	2 cut(s)	175, 457
Bsp1286I	GDGCHC	2 cut(s)	268, 720
Bsp143I	GATC	5 cut(s)	381, 454, 757, 901, 973
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	3 cut(s)	144, 365, 993
BspANI	GGCC	3 cut(s)	6, 96, 590
BspCNI	CTCAG	2 cut(s)	280, 719
BspDI	ATCGAT	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	3 cut(s)	202, 363, 754
BspMAI	CTGCAG	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	752
BspTNI	GGTCTC	2 cut(s)	175, 457
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	91, 97
BssMI	GATC	5 cut(s)	381, 454, 757, 901, 973
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	3 cut(s)	288, 777, 851
Bst4CI	ACNGT	2 cut(s)	478, 574
Bst6I	CTCTTC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	267, 706
BstDSI	CCRYGG	2 cut(s)	91, 97
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	730
BstKTI	GATC	5 cut(s)	384, 457, 760, 904, 976
BstMAI	GTCTC	2 cut(s)	175, 457
BstMBI	GATC	5 cut(s)	381, 454, 757, 901, 973
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 272, 681, 752, 779, 799
BstNI	CCWGG	3 cut(s)	288, 777, 851
BstNSI	RCATGY	2 cut(s)	83, 128
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	3 cut(s)	286, 775, 849
BstSFI	CTRYAG	1 cut(s)	791
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	758, 777, 782, 877
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	6, 96, 590
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	2 cut(s)	91, 97
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	2 cut(s)	474, 570
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	970
Cfr13I	GGNCC	2 cut(s)	4, 361
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	545, 821
CviAII	CATG	8 cut(s)	80, 98, 125, 346, 880, 971, 977, 1005
CviQI	GTAC	2 cut(s)	545, 821
DdeI	CTNAG	2 cut(s)	267, 706
DpnI	GATC	5 cut(s)	383, 456, 759, 903, 975
DpnII	GATC	5 cut(s)	381, 454, 757, 901, 973
EaeI	YGGCCR	2 cut(s)	94, 588
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	2 cut(s)	175, 457
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	48
EcoRII	CCWGG	3 cut(s)	286, 775, 849
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	8 cut(s)	79, 97, 124, 345, 879, 970, 976, 1004
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	901, 973
Fnu4HI	GCNGC	5 cut(s)	747, 771, 791, 891, 993
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	747, 771, 791, 891, 993
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	5 cut(s)	747, 771, 791, 891, 993
GsuI	CTGGAG	2 cut(s)	872, 978
HaeIII	GGCC	3 cut(s)	6, 96, 590
HapII	CCGG	2 cut(s)	53, 633
Hin1II	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
HincII	GTYRAC	1 cut(s)	982
HindII	GTYRAC	1 cut(s)	982
HindIII	AAGCTT	1 cut(s)	913
HinfI	GANTC	2 cut(s)	503, 960
HpaII	CCGG	2 cut(s)	53, 633
HphI	GGTGA	4 cut(s)	42, 76, 525, 679
Hpy166II	GTNNAC	4 cut(s)	241, 481, 619, 982
Hpy188I	TCNGA	3 cut(s)	214, 270, 906
Hpy188III	TCNNGA	4 cut(s)	319, 668, 957, 971
Hpy8I	GTNNAC	4 cut(s)	241, 481, 619, 982
HpyAV	CCTTC	2 cut(s)	285, 859
HpyCH4III	ACNGT	2 cut(s)	478, 574
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	8 cut(s)	128, 156, 330, 422, 695, 738, 793, 874
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 272, 681, 752, 779, 799
HpyF3I	CTNAG	2 cut(s)	267, 706
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
Ksp22I	TGATCA	2 cut(s)	901, 973
Kzo9I	GATC	5 cut(s)	381, 454, 757, 901, 973
LmnI	GCTCC	4 cut(s)	206, 779, 787, 852
Lsp1109I	GCAGC	4 cut(s)	758, 777, 782, 877
LweI	GCATC	4 cut(s)	289, 693, 704, 747
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	6 cut(s)	48, 82, 348, 428, 489, 646
MalI	GATC	5 cut(s)	383, 456, 759, 903, 975
MboI	GATC	5 cut(s)	381, 454, 757, 901, 973
MhlI	GDGCHC	2 cut(s)	268, 720
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	7 cut(s)	246, 313, 437, 516, 520, 628, 733
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	3 cut(s)	86, 114, 683
MnlI	CCTC	7 cut(s)	32, 132, 191, 576, 700, 715, 978
Mox20I	TGGCCA	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	3 cut(s)	33, 333, 519
MslI	CAYNNNNRTG	3 cut(s)	96, 723, 975
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	2 cut(s)	749, 995
MspI	CCGG	2 cut(s)	53, 633
MspR9I	CCNGG	3 cut(s)	288, 777, 851
MvaI	CCWGG	3 cut(s)	288, 777, 851
MwoI	GCNNNNNNNGC	6 cut(s)	12, 272, 681, 752, 779, 799
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	381, 454, 757, 901, 973
NlaIII	CATG	8 cut(s)	83, 101, 128, 349, 883, 974, 980, 1008
NlaIV	GGNNCC	3 cut(s)	202, 363, 754
NmuCI	GTSAC	4 cut(s)	48, 82, 348, 489
NspI	RCATGY	2 cut(s)	83, 128
PagI	TCATGA	1 cut(s)	970
PciI	ACATGT	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	503
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	5 cut(s)	748, 772, 792, 892, 994
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
PscI	ACATGT	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	519
Psp6I	CCWGG	3 cut(s)	286, 775, 849
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	3 cut(s)	286, 775, 849
PspN4I	GGNNCC	3 cut(s)	202, 363, 754
PspPI	GGNCC	2 cut(s)	4, 361
PstI	CTGCAG	1 cut(s)	795
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	546, 822
RsaNI	GTAC	2 cut(s)	545, 821
RseI	CAYNNNNRTG	3 cut(s)	96, 723, 975
SaqAI	TTAA	3 cut(s)	33, 333, 519
SatI	GCNGC	5 cut(s)	747, 771, 791, 891, 993
Sau3AI	GATC	5 cut(s)	381, 454, 757, 901, 973
Sau96I	GGNCC	2 cut(s)	4, 361
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	3 cut(s)	288, 777, 851
SduI	GDGCHC	2 cut(s)	268, 720
SfaNI	GCATC	4 cut(s)	289, 693, 704, 747
SfcI	CTRYAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	96, 723, 975
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	7 cut(s)	246, 313, 437, 516, 520, 628, 733
SsiI	CCGC	3 cut(s)	144, 365, 993
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	3 cut(s)	286, 775, 849
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	478, 574
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	453
TasI	AATT	7 cut(s)	246, 313, 437, 516, 520, 628, 733
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	995
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	3 cut(s)	33, 333, 519
Tru9I	TTAA	3 cut(s)	33, 333, 519
TscAI	CASTG	2 cut(s)	481, 577
TseFI	GTSAC	4 cut(s)	48, 82, 348, 489
TseI	GCWGC	4 cut(s)	746, 770, 790, 890
Tsp45I	GTSAC	4 cut(s)	48, 82, 348, 489
TspDTI	ATGAA	2 cut(s)	318, 878
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	2 cut(s)	481, 577
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	2 cut(s)	246, 313
XceI	RCATGY	2 cut(s)	83, 128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.