Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Forward (+)

31573280 .. 31573668

Gene Structure 389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1217300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAATACAAAATCAGGAAGAGTGTAAGCTGGGCTGAGATGGGCCACCGCTGCTGCGGCAAACAGAAGGTGAAGAGAGGTCTATGGTCGCCTGAAGAAGATGAGAAGCTTAGCAAACACATTACCACCCATGGTCATGACAGCTGGAGTTCTGTCCCAAAACATGCAGGCTTGCAGAGGTGTGGCAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCCGAACTCAAGAGGGGATCCTTTACTCCTGAAGAAGAACAGACTATCATTGATGTTCACAGAATTTTGGGCAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.71

Weight (kDa)

9.81

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	26 - 73	6.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	29 - 89	4.7e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AciI	CCGC	2 cut(s)	49, 57
AclWI	GGATC	2 cut(s)	234, 247
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	114, 273
AluBI	AGCT	3 cut(s)	30, 109, 144
AluI	AGCT	3 cut(s)	30, 109, 144
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	234, 247
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	51, 54
ApoI	RAATTY	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	38, 41
BccI	CCATC	2 cut(s)	34, 198
BcoDI	GTCTC	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	52, 55, 58
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	3 cut(s)	53, 56, 59
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	166
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	38, 41
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	239
Bsp1720I	GCTNAGC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	2 cut(s)	49, 57
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	234, 247
BspTNI	GGTCTC	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	14, 68
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	169, 173
BstDEI	CTNAG	2 cut(s)	36, 110
BstDSI	CCRYGG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 57, 192
BstNSI	RCATGY	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	38, 41
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	169, 173
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	43
CviAII	CATG	3 cut(s)	131, 137, 164
CviJI	RGCY	6 cut(s)	30, 35, 45, 109, 144, 171
CviKI_1	RGCY	6 cut(s)	30, 35, 45, 109, 144, 171
DdeI	CTNAG	2 cut(s)	36, 110
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	14, 68
EarI	CTCTTC	2 cut(s)	14, 68
Eco130I	CCWWGG	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	114, 273
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	3 cut(s)	134, 140, 167
FaiI	YATR	4 cut(s)	85, 132, 138, 165
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	130, 136, 163
Fnu4HI	GCNGC	3 cut(s)	52, 55, 58
Fsp4HI	GCNGC	3 cut(s)	52, 55, 58
GluI	GCNGC	3 cut(s)	52, 55, 58
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	134, 140, 167
HindIII	AAGCTT	1 cut(s)	107
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	16, 137, 232, 251
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	167, 175, 195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 57, 192
HpyF3I	CTNAG	2 cut(s)	36, 110
Hsp92II	CATG	3 cut(s)	134, 140, 167
Kzo9I	GATC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	16, 105, 130, 153, 181, 264
Lsp1109I	GCAGC	2 cut(s)	38, 41
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	6 cut(s)	31, 85, 107, 110, 266, 269
MflI	RGATCY	1 cut(s)	239
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	3 cut(s)	71, 171, 228
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	51, 144
MwoI	GCNNNNNNNGC	3 cut(s)	51, 57, 192
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	134, 140, 167
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	167
PagI	TCATGA	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	53, 56, 59
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	135
SatI	GCNGC	3 cut(s)	52, 55, 58
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	43
SetI	ASST	7 cut(s)	32, 72, 82, 111, 146, 182, 200
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	49, 57
StyI	CCWWGG	1 cut(s)	130
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	60
TseI	GCWGC	2 cut(s)	51, 54
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.