Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

17272354 .. 17274259

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG165500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCACAAGGTTTGGACCCGCAGACCCATAACTTGATCTCTTCTCATAAAAGGTCAGTAGCTTCTAATAAGATTGCAGGCAGTAACGCCAAATTACAATCCCACATCGATCAAAAGAGACCAGTTTTCACTGTGAACAATATGTCACAGATAATAGATTCTTCAACGGAAATTAATTACTCTATTTCACCACCTATTGTACCATTTTCCAATGCTCAACCTCCCACTGTTCAACCCATAATGGCCACACCCATAGATAATCAATATCTTGTTCACAACCCTAATTCCGGCTGGACTAGTGTTACCGATATTCCAACCTTTCCCGATAGCACACAGAGCATCACCTCTGCATCTTCTTCCTCAGCGTTTGGGCACTTGGATGGTAGTAATTGCATCTGGGCAGCTGGTGCCGATCCCTTTGAAGCAGCACCAGGAGCAATGGAGCTGCAGGGAGAGCAGTCAAAAGGACAAGTAGTACAAGTAGAGCAAGAAAAGGAAAAGCTCCTGGAGATGGAAATGAAGGCTATGCAGGACATGGATATTGCTGCTTCGTTTGATCAGAGTTCAAGCTTTGATTTTAGCCTTGTGGAGTATTGCTCTACACTAATGTCTGGAGTCGTGCCTCATGATCATGTCAACTATTCTGCCGCTGACTTTACATGGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

223

Amino Acids

24.23

Weight (kDa)

4.6

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	2 cut(s)	20, 648
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	243
AfaI	GTAC	2 cut(s)	201, 477
AfiI	CCNNNNNNNGG	2 cut(s)	287, 511
AgsI	TTSAA	4 cut(s)	165, 233, 422, 567
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	2 cut(s)	430, 504
AluBI	AGCT	5 cut(s)	62, 404, 445, 502, 570
AluI	AGCT	5 cut(s)	62, 404, 445, 502, 570
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	4 cut(s)	401, 425, 445, 545
AseI	ATTAAT	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	180, 334
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	413, 432, 437, 532
BccI	CCATC	2 cut(s)	374, 505
BciT130I	CCWGG	2 cut(s)	432, 506
BclI	TGATCA	2 cut(s)	556, 628
BcoDI	GTCTC	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	446
BisI	GCNGC	5 cut(s)	402, 426, 446, 546, 648
BlsI	GCNGC	5 cut(s)	403, 427, 447, 547, 649
Bme1390I	CCNGG	2 cut(s)	432, 506
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	18, 409
BmrFI	CCNGG	2 cut(s)	432, 506
BmsI	GCATC	3 cut(s)	348, 359, 402
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	2 cut(s)	527, 633
Bpu10I	CCTNAGC	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 511
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	432, 506
BseCI	ATCGAT	1 cut(s)	108
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	287, 511
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	413, 432, 437, 532
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	287, 511
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	36, 109, 412, 556, 628
BspACI	CCGC	2 cut(s)	20, 648
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	374
BspDI	ATCGAT	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	18, 409
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	122
BssMI	GATC	5 cut(s)	36, 109, 412, 556, 628
Bst2UI	CCWGG	2 cut(s)	432, 506
Bst4CI	ACNGT	2 cut(s)	133, 229
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	5 cut(s)	39, 112, 415, 559, 631
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	5 cut(s)	36, 109, 412, 556, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	336, 407, 434, 454
BstNI	CCWGG	2 cut(s)	432, 506
BstSCI	CCNGG	2 cut(s)	430, 504
BstSFI	CTRYAG	1 cut(s)	446
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	413, 432, 437, 532
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	245
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	129, 225
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	200, 476
CviAII	CATG	4 cut(s)	535, 626, 632, 660
CviJI	RGCY	9 cut(s)	62, 245, 291, 404, 445, 502, 524, 570, 582
CviKI_1	RGCY	9 cut(s)	62, 245, 291, 404, 445, 502, 524, 570, 582
CviQI	GTAC	2 cut(s)	200, 476
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	5 cut(s)	38, 111, 414, 558, 630
DpnII	GATC	5 cut(s)	36, 109, 412, 556, 628
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	430, 504
FaeI	CATG	4 cut(s)	538, 629, 635, 663
FatI	CATG	4 cut(s)	534, 625, 631, 659
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	2 cut(s)	556, 628
Fnu4HI	GCNGC	5 cut(s)	402, 426, 446, 546, 648
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	5 cut(s)	402, 426, 446, 546, 648
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	5 cut(s)	402, 426, 446, 546, 648
GsuI	CTGGAG	2 cut(s)	527, 633
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	4 cut(s)	538, 629, 635, 663
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	568
HinfI	GANTC	2 cut(s)	158, 615
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	180, 334
Hpy166II	GTNNAC	3 cut(s)	136, 274, 637
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	3 cut(s)	323, 612, 626
Hpy8I	GTNNAC	3 cut(s)	136, 274, 637
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	133, 229
HpyCH4V	TGCA	5 cut(s)	77, 350, 393, 448, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	336, 407, 434, 454
HpyF3I	CTNAG	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	538, 629, 635, 663
Ksp22I	TGATCA	2 cut(s)	556, 628
Kzo9I	GATC	5 cut(s)	36, 109, 412, 556, 628
LmnI	GCTCC	3 cut(s)	434, 442, 507
Lsp1109I	GCAGC	4 cut(s)	413, 432, 437, 532
LweI	GCATC	3 cut(s)	348, 359, 402
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	4 cut(s)	3, 83, 144, 301
MalI	GATC	5 cut(s)	38, 111, 414, 558, 630
MboI	GATC	5 cut(s)	36, 109, 412, 556, 628
MboII	GAAGA	4 cut(s)	33, 153, 345, 348
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	5 cut(s)	92, 171, 175, 283, 388
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	231, 355, 370, 633
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	378, 630
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	404, 650
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	432, 506
MvaI	CCWGG	2 cut(s)	432, 506
MwoI	GCNNNNNNNGC	4 cut(s)	336, 407, 434, 454
NdeII	GATC	5 cut(s)	36, 109, 412, 556, 628
NlaIII	CATG	4 cut(s)	538, 629, 635, 663
NlaIV	GGNNCC	2 cut(s)	18, 409
NmuCI	GTSAC	2 cut(s)	3, 144
PagI	TCATGA	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	5 cut(s)	403, 427, 447, 547, 649
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	430, 504
PspGI	CCWGG	2 cut(s)	430, 504
PspN4I	GGNNCC	2 cut(s)	18, 409
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	201, 477
RsaNI	GTAC	2 cut(s)	200, 476
RseI	CAYNNNNRTG	2 cut(s)	378, 630
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	5 cut(s)	402, 426, 446, 546, 648
Sau3AI	GATC	5 cut(s)	36, 109, 412, 556, 628
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	2 cut(s)	432, 506
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	348, 359, 402
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	2 cut(s)	378, 630
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	5 cut(s)	92, 171, 175, 283, 388
SsiI	CCGC	2 cut(s)	20, 648
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	430, 504
TaaI	ACNGT	2 cut(s)	133, 229
TaqI	TCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	92, 171, 175, 283, 388
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	136, 232
TseFI	GTSAC	2 cut(s)	3, 144
TseI	GCWGC	4 cut(s)	401, 425, 445, 545
Tsp45I	GTSAC	2 cut(s)	3, 144
TspDTI	ATGAA	1 cut(s)	533
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	136, 232
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	174
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.