Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Forward (+)

21631963 .. 21633991

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGAAGCTCAGCAACCACCCATGGTCATGGCAGCTGGAGTTCTGTCCCAAAATACGCAGGCTTGCAGAGGTGTGGCAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCCGAACTCAAGAGGGGATCCTTTATTCCTGAAGAAGAACAGACTATCATTGATGTTCACAGAATTTTGGGCAACAAATGGGCTCAGATTGCCAAGCATCTCCCCGGAAGAACAGACAATGAGGTGAAGAATTTCTGGAATTCATGCATTAAGAAAAAGCTCATGTCACAAGGTTTGGACCCAAAAACCCATAACTTGCTTCCTAATTCTCATCATCAGAGATCAGCTTCTAGCAAGGTTGCAAGCAGCAGCCAATCACCACTGCTGCAATTACATAATCAACAGCAACCCATTCAAGTGCCTTTCACTGAAATAAATGCATCACCTATTAATGTGACATTACGTACTTATCAATATCATGATCTTGATCAAAACCCTTGTAATGCTTCTTGGACTAGGGTTGAGGATCCTACATTCAATGACATCACCAATTTGCCTCATCAACCATCCACTGATCACAGCACACTGATCAATAATATTCCCTCTTCATCGTCGTCTTCCTCGGTGAACCTATCAGTGTTTGGTCTCTTGGAAAATAGTAACATCTGGCTTTCTGGTGCTGATCCCTTTGAAGTACCAAGAATAGTATTGGGAGAGCAGTCAAAGGGAGAAGAAGTAGTTCTACAGCAAGAAAAGGAGACGCTCTTGGATCAGATGGAAATTAAGCGTATTGAGGATATCGATCATGCTTCAATATTTGAAAGTTCTAGTATTGATTTTAGCTTTGTCGAGTCTACACTTATGTCGTATCTCAGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

293

Amino Acids

33.0

Weight (kDa)

6.46

Isoelectric Point (pI)

68.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	7 - 37	1.2e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	11 - 52	7.6e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	43 - 86	6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	48 - 91	1.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	848
AclWI	GGATC	6 cut(s)	126, 139, 515, 528, 671, 771
AcsI	RAATTY	3 cut(s)	177, 244, 253
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	460, 690
AgsI	TTSAA	5 cut(s)	410, 532, 686, 807, 815
AluBI	AGCT	5 cut(s)	9, 36, 274, 341, 837
AluI	AGCT	5 cut(s)	9, 36, 274, 341, 837
Alw26I	GTCTC	3 cut(s)	106, 644, 746
AlwI	GGATC	6 cut(s)	126, 139, 515, 528, 671, 771
ApeKI	GCWGC	4 cut(s)	33, 360, 363, 379
ApoI	RAATTY	3 cut(s)	177, 244, 253
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	2 cut(s)	245, 732
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	5 cut(s)	250, 363, 429, 532, 631
AvaII	GGWCC	1 cut(s)	292
BamHI	GGATCC	2 cut(s)	131, 520
BanII	GRGCYC	1 cut(s)	199
BarI	GAAGNNNNNNTAC	2 cut(s)	720, 752
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	45, 366, 372, 375
BccI	CCATC	3 cut(s)	90, 568, 763
BclI	TGATCA	3 cut(s)	481, 568, 582
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	106, 644, 746
BfaI	CTAG	3 cut(s)	345, 510, 822
BfmI	CTRYAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	4 cut(s)	34, 361, 364, 380
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	4 cut(s)	35, 362, 365, 381
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	133, 294, 522
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	220, 443
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	2 cut(s)	795, 872
BsaAI	YACGTR	1 cut(s)	458
BsaBI	GATNNNNATC	2 cut(s)	480, 795
BsaI	GGTCTC	2 cut(s)	106, 644
BsaJI	CCNNGG	3 cut(s)	22, 217, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bse8I	GATNNNNATC	2 cut(s)	480, 795
BseCI	ATCGAT	2 cut(s)	795, 872
BseDI	CCNNGG	3 cut(s)	22, 217, 615
BseGI	GGATG	1 cut(s)	560
BseJI	GATNNNNATC	2 cut(s)	480, 795
BseMII	CTCAG	2 cut(s)	24, 212
BseXI	GCAGC	4 cut(s)	45, 366, 372, 375
BshVI	ATCGAT	2 cut(s)	795, 872
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	3 cut(s)	106, 644, 746
BsmBI	CGTCTC	1 cut(s)	746
BsmFI	GGGAC	1 cut(s)	32
Bso31I	GGTCTC	2 cut(s)	106, 644
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	22
BspCNI	CTCAG	3 cut(s)	23, 211, 879
BspDI	ATCGAT	2 cut(s)	795, 872
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	133, 294, 522
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	6 cut(s)	126, 139, 515, 528, 671, 771
BspTNI	GGTCTC	2 cut(s)	106, 644
BssECI	CCNNGG	3 cut(s)	22, 217, 615
BssT1I	CCWWGG	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	604
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	61, 65, 358
BstDEI	CTNAG	3 cut(s)	10, 198, 866
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	560
BstMAI	GTCTC	3 cut(s)	106, 644, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 203
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	737
BstSNI	TACGTA	1 cut(s)	458
BstV1I	GCAGC	4 cut(s)	45, 366, 372, 375
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	131, 520
BstXI	CCANNNNNNTGG	1 cut(s)	29
BstYI	RGATCY	2 cut(s)	131, 520
Bsu15I	ATCGAT	2 cut(s)	795, 872
BsuTUI	ATCGAT	2 cut(s)	795, 872
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	560
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	5 cut(s)	374, 420, 564, 578, 636
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	61, 65, 358
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	2 cut(s)	795, 872
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	2 cut(s)	459, 689
CviAII	CATG	6 cut(s)	23, 29, 258, 277, 473, 800
CviJI	RGCY	9 cut(s)	9, 36, 63, 197, 274, 341, 366, 664, 837
CviKI_1	RGCY	9 cut(s)	9, 36, 63, 197, 274, 341, 366, 664, 837
CviQI	GTAC	2 cut(s)	459, 689
DdeI	CTNAG	3 cut(s)	10, 198, 866
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco105I	TACGTA	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	2 cut(s)	106, 644
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	2 cut(s)	263, 436
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	746
FaeI	CATG	6 cut(s)	26, 32, 261, 280, 476, 803
FaiI	YATR	9 cut(s)	24, 30, 259, 278, 306, 390, 474, 801, 857
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	6 cut(s)	22, 28, 257, 276, 472, 799
FbaI	TGATCA	3 cut(s)	481, 568, 582
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	4 cut(s)	34, 361, 364, 380
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	34, 361, 364, 380
FspBI	CTAG	3 cut(s)	345, 510, 822
GluI	GCNGC	4 cut(s)	34, 361, 364, 380
GsuI	CTGGAG	1 cut(s)	58
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	763
Hin1II	CATG	6 cut(s)	26, 32, 261, 280, 476, 803
HinfI	GANTC	1 cut(s)	845
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	5 cut(s)	250, 363, 429, 532, 631
Hpy166II	GTNNAC	3 cut(s)	172, 622, 849
Hpy188I	TCNGA	5 cut(s)	201, 333, 768, 869, 878
Hpy188III	TCNNGA	5 cut(s)	124, 143, 250, 473, 479
Hpy8I	GTNNAC	3 cut(s)	172, 622, 849
Hpy99I	CGWCG	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	6 cut(s)	67, 87, 261, 356, 382, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 203
HpyF3I	CTNAG	3 cut(s)	10, 198, 866
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	6 cut(s)	26, 32, 261, 280, 476, 803
Ksp22I	TGATCA	3 cut(s)	481, 568, 582
LpnPI	CCDG	8 cut(s)	22, 45, 73, 156, 232, 235, 646, 654
Lsp1109I	GCAGC	4 cut(s)	45, 366, 372, 375
LweI	GCATC	2 cut(s)	220, 443
MaeI	CTAG	3 cut(s)	345, 510, 822
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	3 cut(s)	279, 448, 653
MboII	GAAGA	7 cut(s)	158, 161, 234, 253, 591, 603, 737
MflI	RGATCY	2 cut(s)	131, 520
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	7 cut(s)	177, 244, 253, 319, 383, 544, 774
MlyI	GAGTC	1 cut(s)	854
MnlI	CCTC	8 cut(s)	63, 120, 229, 511, 561, 607, 625, 781
Mph1103I	ATGCAT	2 cut(s)	263, 436
MroXI	GAANNNNTTC	2 cut(s)	245, 732
MseI	TTAA	3 cut(s)	264, 444, 777
MslI	CAYNNNNRTG	2 cut(s)	27, 410
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	84, 203
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	22
NlaIII	CATG	6 cut(s)	26, 32, 261, 280, 476, 803
NlaIV	GGNNCC	3 cut(s)	133, 294, 522
NmuCI	GTSAC	2 cut(s)	279, 448
NsiI	ATGCAT	2 cut(s)	263, 436
PagI	TCATGA	1 cut(s)	472
PdmI	GAANNNNTTC	2 cut(s)	245, 732
PkrI	GCNGC	4 cut(s)	35, 362, 365, 381
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Ppu21I	YACGTR	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	444
PspN4I	GGNNCC	3 cut(s)	133, 294, 522
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	131, 520
PvuII	CAGCTG	1 cut(s)	36
RsaI	GTAC	2 cut(s)	460, 690
RsaNI	GTAC	2 cut(s)	459, 689
RseI	CAYNNNNRTG	2 cut(s)	27, 410
SaqAI	TTAA	3 cut(s)	264, 444, 777
SatI	GCNGC	4 cut(s)	34, 361, 364, 380
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	220, 443
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	27, 410
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SnaBI	TACGTA	1 cut(s)	458
Sse9I	AATT	7 cut(s)	177, 244, 253, 319, 383, 544, 774
SspI	AATATT	2 cut(s)	592, 810
SspMI	CTAG	3 cut(s)	345, 510, 822
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	22
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	795, 843, 872
TasI	AATT	7 cut(s)	177, 244, 253, 319, 383, 544, 774
Tru1I	TTAA	3 cut(s)	264, 444, 777
Tru9I	TTAA	3 cut(s)	264, 444, 777
TscAI	CASTG	5 cut(s)	381, 427, 571, 585, 636
TseFI	GTSAC	2 cut(s)	279, 448
TseI	GCWGC	4 cut(s)	33, 360, 363, 379
Tsp45I	GTSAC	2 cut(s)	279, 448
TspDTI	ATGAA	2 cut(s)	246, 591
TspRI	CASTG	5 cut(s)	381, 427, 571, 585, 636
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	177, 244, 253
XmiI	GTMKAC	1 cut(s)	848
XmnI	GAANNNNTTC	2 cut(s)	245, 732
XspI	CTAG	3 cut(s)	345, 510, 822
Zsp2I	ATGCAT	2 cut(s)	263, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.