Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Reverse (-)

18081196 .. 18082683

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGCCATCGGTGCTGTGGGAAACATAAGGTTAAGAGAGGTCTTTGGTCGCCGGAAGAAGACGACAAGCTCATCAAACATGTCACCACCCACGGCCATGGCAGTTGGAGTTCTGTCCCTAAACATGCAGGGTTGGAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTTAAGAGAGGCTCCTTTACTTCTGAAGAAGAACAGATTATTATTGATGTCCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCGAAGCATCTACCTGGAAGGACAGACAATGAAGTGAAGAATTTCTGGAACTCTTGCATTAAGAAGAAGCTCATGTCACAAGGTTTGGACCCGCAGACCCATAACTTGATCTCTTCTCATAAAAGGTCAGTAGCTTCTAATAAGACTGCAGGCAGCAACGCCAAATTACAATCCCACATCGATCAAAAGAGACCAGTTTTCACTGTGAACAATATGTCACAGATGATAGATTCTTCAACGGAAATTAATTACTCAATTTCACCACCTATTGTACCATTGTCCAATGCTCAACCTCCCACTGTTCAACCCATAATGGCCACACCCACAGATAACCAATATCTTATTCAAACTAATTCCGGCTGGACTAGTGTTACCGATATTCCAACCTTTCCCGATAGCACACTGAACATCACCTCTGCATCGTCTTCCTCAGCGTTTGGGCACTTGGATGGTAGTAATTGCATCTGGACAGCTGGTGCTGATCCCTTTGAAGGAGCACCAGGAGCAATGGAGCTGCAGGGAGAGCAGTCAGAAGGACAAGTGGTACAAGTAGAGCAAGAAAAGGAAAAGCTCTTGGAGATGGAAATGAAGGCTATGCAGGACATGGATATTGCTGCTTCGTTTGATCAGAGCTCAAGCTTTGACTTTAGCCTTGTGGAGTATTACTCTACACTAATGTCTGGGGTCGTGCCTCATGATCATGTCAACTATTCTGCCGCTGACTTTACATGGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

338

Amino Acids

37.55

Weight (kDa)

6.27

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	5.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 114	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	2 cut(s)	365, 990
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	2 cut(s)	94, 588
AcsI	RAATTY	2 cut(s)	246, 313
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	546, 819
AfiI	CCNNNNNNNGG	1 cut(s)	764
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	510, 578, 620, 764
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	286, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	8 cut(s)	70, 343, 407, 746, 787, 844, 906, 912
AluI	AGCT	8 cut(s)	70, 343, 407, 746, 787, 844, 906, 912
Alw21I	GWGCWC	2 cut(s)	772, 908
Alw26I	GTCTC	2 cut(s)	175, 457
AlwI	GGATC	1 cut(s)	749
AoxI	GGCC	3 cut(s)	4, 94, 588
ApeKI	GCWGC	3 cut(s)	426, 787, 887
ApoI	RAATTY	2 cut(s)	246, 313
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	4, 361
AsuHPI	GGTGA	3 cut(s)	76, 525, 676
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	717
BalI	TGGCCA	1 cut(s)	590
BanII	GRGCYC	2 cut(s)	268, 908
BbsI	GAAGAC	2 cut(s)	66, 690
Bbv12I	GWGCWC	2 cut(s)	772, 908
BbvCI	CCTCAGC	1 cut(s)	703
BbvI	GCAGC	3 cut(s)	438, 774, 874
BccI	CCATC	5 cut(s)	15, 159, 255, 716, 847
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	288, 774
BclI	TGATCA	2 cut(s)	898, 970
BcoDI	GTCTC	2 cut(s)	175, 457
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	2 cut(s)	420, 788
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	4 cut(s)	427, 788, 888, 990
BlsI	GCNGC	4 cut(s)	428, 789, 889, 991
Bme1390I	CCNGG	2 cut(s)	288, 774
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	4, 361
BmiI	GGNNCC	2 cut(s)	202, 363
BmrFI	CCNGG	2 cut(s)	288, 774
BmsI	GCATC	3 cut(s)	289, 701, 744
BpiI	GAAGAC	2 cut(s)	66, 690
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
Bpu10I	CCTNAGC	1 cut(s)	703
BpuEI	CTTGAG	1 cut(s)	892
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	175, 457
BsaJI	CCNNGG	2 cut(s)	91, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	288, 774
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	91, 97
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	281, 717
BseNI	ACTGG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	3 cut(s)	438, 774, 874
BshFI	GGCC	3 cut(s)	6, 96, 590
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	772, 908
BsiSI	CCGG	2 cut(s)	53, 630
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	2 cut(s)	175, 457
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	6, 96, 590
Bso31I	GGTCTC	2 cut(s)	175, 457
Bsp1286I	GDGCHC	4 cut(s)	268, 717, 772, 908
Bsp143I	GATC	5 cut(s)	381, 454, 754, 898, 970
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	365, 990
BspANI	GGCC	3 cut(s)	6, 96, 590
BspCNI	CTCAG	2 cut(s)	280, 716
BspDI	ATCGAT	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	967
BspLI	GGNNCC	2 cut(s)	202, 363
BspMAI	CTGCAG	2 cut(s)	424, 792
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	749
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	175, 457
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	91, 97
BssMI	GATC	5 cut(s)	381, 454, 754, 898, 970
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	2 cut(s)	288, 774
Bst4CI	ACNGT	2 cut(s)	478, 574
Bst6I	CTCTTC	1 cut(s)	391
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	267, 703
BstDSI	CCRYGG	2 cut(s)	91, 97
BstF5I	GGATG	1 cut(s)	727
BstKTI	GATC	5 cut(s)	384, 457, 757, 901, 973
BstMAI	GTCTC	2 cut(s)	175, 457
BstMBI	GATC	5 cut(s)	381, 454, 754, 898, 970
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 272, 776, 796
BstNI	CCWGG	2 cut(s)	288, 774
BstNSI	RCATGY	2 cut(s)	83, 128
BstSCI	CCNGG	2 cut(s)	286, 772
BstSFI	CTRYAG	2 cut(s)	420, 788
BstSLI	GKGCMC	1 cut(s)	717
BstV1I	GCAGC	3 cut(s)	438, 774, 874
BstV2I	GAAGAC	2 cut(s)	66, 690
BstXI	CCANNNNNNTGG	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	6, 96, 590
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	2 cut(s)	91, 97
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	3 cut(s)	474, 570, 674
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	967
Cfr13I	GGNCC	2 cut(s)	4, 361
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	545, 818
CviAII	CATG	8 cut(s)	80, 98, 125, 346, 877, 968, 974, 1002
CviQI	GTAC	2 cut(s)	545, 818
DdeI	CTNAG	2 cut(s)	267, 703
DpnI	GATC	5 cut(s)	383, 456, 756, 900, 972
DpnII	GATC	5 cut(s)	381, 454, 754, 898, 970
EaeI	YGGCCR	2 cut(s)	94, 588
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	268, 908
Eco31I	GGTCTC	2 cut(s)	175, 457
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	906
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	286, 772
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	2 cut(s)	268, 908
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	8 cut(s)	83, 101, 128, 349, 880, 971, 977, 1005
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	8 cut(s)	79, 97, 124, 345, 876, 967, 973, 1001
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	898, 970
Fnu4HI	GCNGC	4 cut(s)	427, 788, 888, 990
FokI	GGATG	1 cut(s)	734
FriOI	GRGCYC	2 cut(s)	268, 908
Fsp4HI	GCNGC	4 cut(s)	427, 788, 888, 990
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	4 cut(s)	427, 788, 888, 990
HaeIII	GGCC	3 cut(s)	6, 96, 590
HapII	CCGG	2 cut(s)	53, 630
Hin1II	CATG	8 cut(s)	83, 101, 128, 349, 880, 971, 977, 1005
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	910
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	2 cut(s)	53, 630
HphI	GGTGA	3 cut(s)	76, 525, 676
Hpy166II	GTNNAC	3 cut(s)	241, 481, 979
Hpy188I	TCNGA	4 cut(s)	214, 270, 805, 903
Hpy188III	TCNNGA	4 cut(s)	319, 665, 739, 968
Hpy8I	GTNNAC	3 cut(s)	241, 481, 979
HpyAV	CCTTC	4 cut(s)	285, 758, 800, 856
HpyCH4III	ACNGT	2 cut(s)	478, 574
HpyCH4V	TGCA	8 cut(s)	128, 156, 330, 422, 692, 735, 790, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 272, 776, 796
HpyF3I	CTNAG	2 cut(s)	267, 703
Hsp92II	CATG	8 cut(s)	83, 101, 128, 349, 880, 971, 977, 1005
Ksp22I	TGATCA	2 cut(s)	898, 970
Kzo9I	GATC	5 cut(s)	381, 454, 754, 898, 970
LmnI	GCTCC	4 cut(s)	206, 767, 776, 784
Lsp1109I	GCAGC	3 cut(s)	438, 774, 874
LweI	GCATC	3 cut(s)	289, 701, 744
MaeI	CTAG	1 cut(s)	639
MaeIII	GTNAC	4 cut(s)	82, 348, 489, 643
MalI	GATC	5 cut(s)	383, 456, 756, 900, 972
MboI	GATC	5 cut(s)	381, 454, 754, 898, 970
MboII	GAAGA	9 cut(s)	68, 71, 227, 230, 322, 349, 378, 498, 690
MhlI	GDGCHC	4 cut(s)	268, 717, 772, 908
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	8 cut(s)	246, 313, 437, 516, 520, 528, 625, 730
MluNI	TGGCCA	1 cut(s)	590
MmeI	TCCRAC	3 cut(s)	86, 114, 680
MnlI	CCTC	7 cut(s)	32, 132, 191, 576, 697, 712, 975
Mox20I	TGGCCA	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	4 cut(s)	33, 192, 333, 519
MslI	CAYNNNNRTG	3 cut(s)	96, 720, 972
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	2 cut(s)	746, 992
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	2 cut(s)	53, 630
MspR9I	CCNGG	2 cut(s)	288, 774
MvaI	CCWGG	2 cut(s)	288, 774
MwoI	GCNNNNNNNGC	4 cut(s)	12, 272, 776, 796
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	381, 454, 754, 898, 970
NlaIII	CATG	8 cut(s)	83, 101, 128, 349, 880, 971, 977, 1005
NlaIV	GGNNCC	2 cut(s)	202, 363
NmuCI	GTSAC	3 cut(s)	82, 348, 489
NspI	RCATGY	2 cut(s)	83, 128
PagI	TCATGA	1 cut(s)	967
PciI	ACATGT	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	428, 789, 889, 991
PscI	ACATGT	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	908
Psp6I	CCWGG	2 cut(s)	286, 772
PspGI	CCWGG	2 cut(s)	286, 772
PspN4I	GGNNCC	2 cut(s)	202, 363
PspPI	GGNCC	2 cut(s)	4, 361
PstI	CTGCAG	2 cut(s)	424, 792
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	2 cut(s)	546, 819
RsaNI	GTAC	2 cut(s)	545, 818
RseI	CAYNNNNRTG	3 cut(s)	96, 720, 972
SacI	GAGCTC	1 cut(s)	908
SaqAI	TTAA	4 cut(s)	33, 192, 333, 519
SatI	GCNGC	4 cut(s)	427, 788, 888, 990
Sau3AI	GATC	5 cut(s)	381, 454, 754, 898, 970
Sau96I	GGNCC	2 cut(s)	4, 361
ScrFI	CCNGG	2 cut(s)	288, 774
SduI	GDGCHC	4 cut(s)	268, 717, 772, 908
SfaNI	GCATC	3 cut(s)	289, 701, 744
SfcI	CTRYAG	2 cut(s)	420, 788
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	96, 720, 972
SmlI	CTYRAG	2 cut(s)	191, 907
SmoI	CTYRAG	2 cut(s)	191, 907
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	8 cut(s)	246, 313, 437, 516, 520, 528, 625, 730
SsiI	CCGC	2 cut(s)	365, 990
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	908
StyD4I	CCNGG	2 cut(s)	286, 772
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	478, 574
TaqI	TCGA	1 cut(s)	453
TasI	AATT	8 cut(s)	246, 313, 437, 516, 520, 528, 625, 730
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	4 cut(s)	33, 192, 333, 519
Tru9I	TTAA	4 cut(s)	33, 192, 333, 519
TscAI	CASTG	3 cut(s)	481, 577, 681
TseFI	GTSAC	3 cut(s)	82, 348, 489
TseI	GCWGC	3 cut(s)	426, 787, 887
Tsp45I	GTSAC	3 cut(s)	82, 348, 489
TspDTI	ATGAA	2 cut(s)	318, 875
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	3 cut(s)	481, 577, 681
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	361
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	2 cut(s)	246, 313
XceI	RCATGY	2 cut(s)	83, 128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.