Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012868

Physical Location & Seq

Genomic Coordinates Forward (+)

24146884 .. 24148145

Gene Structure 1262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGCCACCGCTGCTGCGGCAAACAGAAGGTGAAGAGAGGTCTATGGTCACCTGAAGAAGATGAGAAGCTCAGGAAACACATTACCACCCATGGTCATGGCAGCTGGAGTTCTGTCCCAAAACATGCAGGCTTGCAAAGGTGTGGCAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCTGAACTCAGGAGGGGATCCTTTACTCCTGAAGAAGAACAGACTATCATTGATGTTCACAGAATTTTGGGTAACAAATGGGCTCAGATTGCCAAGCATCTCCCTGGAAGAACAGACAATGAGGTGAAGAATTTCTGGAATTCATGTATTAAGAAAAAGCTCATGTCACAAGGTTTAGACCCAAAAACCCACAACTTGCTTCCTAATTCTCATCATCAGAGGTCAGCTTCTAACAACGCTGCAAGCAGCAGCCAATCACCACTACTGCAGTCACATAATCAACAGCAACCCGTTTCAGTACCTTTAACTGAAATAAATGCATCAACTATTAATGTGACATTATCTACTGATCAATATCATGATCATGGTCAAAACCCTAGTAATGCTTCTTGGACTAGGGTTGACGATCCTACCTTCAATGACATCACCAGGTTGCCTCATCAACAATCCACTGATCACAGCACAATGATCAATAATATTTCCTCTTCATCGCCGTCTTCCTCGGTGAACCTATCAGTGTTTGGTCTCTTGGAAAATAGTAACATCTGGGCTTCTGGTGCTGAACCATTTGAAGCACCAAGTTTATTAGTGGGAGAGCAGTCAAAGGGAGAAGAAGTAGTTCTACAGCAAGAAAAAAATACGCTCTTGGATCGATCAGATGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

284

Amino Acids

31.65

Weight (kDa)

8.59

Isoelectric Point (pI)

69.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 76	2.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	4.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 114	8.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12720
fragaria_vesca	FvH4_3g13990
malus_domestica	MD05G1239200.v1.1 MD10G1217300.v1.1
prunus_persica	Prupe.4G126900_v2.0.a1
pyrus_communis	pycom05g21550 pycom10g18330
rosa_chinensis	RchiOBHm_Chr5g0023221
rosa_laevigata	RLG00000032710
rosa_multiflora	Rmu_sc0001735.1_g000008 Rmu_sc0007300.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056110
rosa_rugosa	Rorug05G0078100
rosa_samantha	Rh5AG164200 Rh5BG163700 Rh5CG178900 Rh5DG165500
rosa_wichuraiana	Rw5G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	2 cut(s)	10, 18
AclWI	GGATC	4 cut(s)	195, 208, 584, 840
AcsI	RAATTY	3 cut(s)	246, 313, 322
AcuI	CTGAAG	2 cut(s)	75, 234
AfaI	GTAC	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	601, 755
AjnI	CCWGG	2 cut(s)	286, 611
AluBI	AGCT	4 cut(s)	70, 105, 343, 410
AluI	AGCT	4 cut(s)	70, 105, 343, 410
Alw26I	GTCTC	2 cut(s)	175, 713
AlwI	GGATC	4 cut(s)	195, 208, 584, 840
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	6 cut(s)	12, 15, 102, 422, 429, 432
ApoI	RAATTY	3 cut(s)	246, 313, 322
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	2 cut(s)	314, 801
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	6 cut(s)	42, 43, 319, 432, 601, 700
BamHI	GGATCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	5 cut(s)	2, 114, 409, 441, 444
BccI	CCATC	2 cut(s)	159, 836
BceAI	ACGGC	1 cut(s)	661
BciT130I	CCWGG	2 cut(s)	288, 613
BclI	TGATCA	4 cut(s)	532, 544, 637, 651
BcoDI	GTCTC	2 cut(s)	175, 713
BfaI	CTAG	2 cut(s)	561, 579
BfmI	CTRYAG	2 cut(s)	449, 806
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	7 cut(s)	13, 16, 19, 103, 423, 430, 433
BlsI	GCNGC	7 cut(s)	14, 17, 20, 104, 424, 431, 434
Bme1390I	CCNGG	2 cut(s)	288, 613
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	288, 613
BmsI	GCATC	2 cut(s)	289, 512
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	537
BsaI	GGTCTC	2 cut(s)	175, 713
BsaJI	CCNNGG	3 cut(s)	91, 286, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	288, 613
BseCI	ATCGAT	1 cut(s)	835
BseDI	CCNNGG	3 cut(s)	91, 286, 684
BseJI	GATNNNNATC	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	85, 205, 281
BseXI	GCAGC	5 cut(s)	2, 114, 409, 441, 444
BshFI	GGCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	835
BslFI	GGGAC	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	175, 713
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	2 cut(s)	175, 713
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	2 cut(s)	10, 18
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	3 cut(s)	84, 204, 280
BspDI	ATCGAT	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	195, 208, 584, 840
BspTNI	GGTCTC	2 cut(s)	175, 713
BssECI	CCNNGG	3 cut(s)	91, 286, 684
BssMI	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	288, 613
Bst6I	CTCTTC	2 cut(s)	29, 673
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	130, 134, 427
BstDEI	CTNAG	3 cut(s)	71, 191, 267
BstDSI	CCRYGG	1 cut(s)	91
BstEII	GGTNACC	1 cut(s)	48
BstKTI	GATC	8 cut(s)	203, 535, 547, 592, 640, 654, 835, 839
BstMAI	GTCTC	2 cut(s)	175, 713
BstMBI	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 18, 153, 272, 740
BstNI	CCWGG	2 cut(s)	288, 613
BstNSI	RCATGY	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	286, 611
BstSFI	CTRYAG	2 cut(s)	449, 806
BstV1I	GCAGC	5 cut(s)	2, 114, 409, 441, 444
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	835
BtgI	CCRYGG	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	633, 705
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	130, 134, 427
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	835
CsiI	ACCWGGT	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	7 cut(s)	92, 98, 125, 327, 346, 542, 548
CviJI	RGCY	9 cut(s)	6, 70, 105, 132, 266, 343, 410, 435, 734
CviKI_1	RGCY	9 cut(s)	6, 70, 105, 132, 266, 343, 410, 435, 734
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	3 cut(s)	71, 191, 267
DpnI	GATC	8 cut(s)	202, 534, 546, 591, 639, 653, 834, 838
DpnII	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
Eam1104I	CTCTTC	2 cut(s)	29, 673
EarI	CTCTTC	2 cut(s)	29, 673
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	2 cut(s)	175, 713
Eco57I	CTGAAG	2 cut(s)	75, 234
Eco91I	GGTNACC	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	286, 611
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	7 cut(s)	95, 101, 128, 330, 349, 545, 551
FaiI	YATR	9 cut(s)	46, 93, 99, 126, 328, 347, 459, 543, 549
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	91, 97, 124, 326, 345, 541, 547
FbaI	TGATCA	4 cut(s)	532, 544, 637, 651
Fnu4HI	GCNGC	7 cut(s)	13, 16, 19, 103, 423, 430, 433
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	7 cut(s)	13, 16, 19, 103, 423, 430, 433
FspBI	CTAG	2 cut(s)	561, 579
GluI	GCNGC	7 cut(s)	13, 16, 19, 103, 423, 430, 433
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	7 cut(s)	95, 101, 128, 330, 349, 545, 551
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HphI	GGTGA	6 cut(s)	42, 43, 319, 432, 601, 700
Hpy166II	GTNNAC	3 cut(s)	241, 586, 691
Hpy188I	TCNGA	3 cut(s)	270, 402, 841
Hpy188III	TCNNGA	5 cut(s)	73, 193, 212, 319, 542
Hpy8I	GTNNAC	3 cut(s)	241, 586, 691
HpyAV	CCTTC	2 cut(s)	22, 607
HpyCH4V	TGCA	6 cut(s)	128, 136, 156, 425, 451, 503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 18, 153, 272, 740
HpyF3I	CTNAG	3 cut(s)	71, 191, 267
Hsp92II	CATG	7 cut(s)	95, 101, 128, 330, 349, 545, 551
Ksp22I	TGATCA	4 cut(s)	532, 544, 637, 651
Kzo9I	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
Lsp1109I	GCAGC	5 cut(s)	2, 114, 409, 441, 444
LweI	GCATC	2 cut(s)	289, 512
MabI	ACCWGGT	1 cut(s)	611
MaeI	CTAG	2 cut(s)	561, 579
MaeIII	GTNAC	6 cut(s)	48, 254, 348, 453, 517, 722
MalI	GATC	8 cut(s)	202, 534, 546, 591, 639, 653, 834, 838
MboI	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	5 cut(s)	246, 313, 322, 388, 847
MnlI	CCTC	7 cut(s)	32, 189, 298, 396, 630, 676, 694
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	2 cut(s)	314, 801
MseI	TTAA	4 cut(s)	333, 488, 513, 850
MslI	CAYNNNNRTG	2 cut(s)	96, 546
MspA1I	CMGCKG	2 cut(s)	12, 105
MspR9I	CCNGG	2 cut(s)	288, 613
MvaI	CCWGG	2 cut(s)	288, 613
MwoI	GCNNNNNNNGC	5 cut(s)	12, 18, 153, 272, 740
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
NlaIII	CATG	7 cut(s)	95, 101, 128, 330, 349, 545, 551
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	4 cut(s)	48, 348, 453, 517
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	1 cut(s)	541
PdmI	GAANNNNTTC	2 cut(s)	314, 801
PkrI	GCNGC	7 cut(s)	14, 17, 20, 104, 424, 431, 434
PshBI	ATTAAT	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	286, 611
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	2 cut(s)	286, 611
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	96, 546
SaqAI	TTAA	4 cut(s)	333, 488, 513, 850
SatI	GCNGC	7 cut(s)	13, 16, 19, 103, 423, 430, 433
Sau3AI	GATC	8 cut(s)	200, 532, 544, 589, 637, 651, 832, 836
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	288, 613
SduI	GDGCHC	1 cut(s)	268
SexAI	ACCWGGT	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	289, 512
SfcI	CTRYAG	2 cut(s)	449, 806
SmiMI	CAYNNNNRTG	2 cut(s)	96, 546
Sse9I	AATT	5 cut(s)	246, 313, 322, 388, 847
SsiI	CCGC	2 cut(s)	10, 18
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	561, 579
StyD4I	CCNGG	2 cut(s)	286, 611
StyI	CCWWGG	1 cut(s)	91
TaqI	TCGA	1 cut(s)	835
TasI	AATT	5 cut(s)	246, 313, 322, 388, 847
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	4 cut(s)	333, 488, 513, 850
Tru9I	TTAA	4 cut(s)	333, 488, 513, 850
TscAI	CASTG	2 cut(s)	640, 705
TseFI	GTSAC	4 cut(s)	48, 348, 453, 517
TseI	GCWGC	6 cut(s)	12, 15, 102, 422, 429, 432
Tsp45I	GTSAC	4 cut(s)	48, 348, 453, 517
TspDTI	ATGAA	2 cut(s)	315, 660
TspRI	CASTG	2 cut(s)	640, 705
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	3 cut(s)	246, 313, 322
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	2 cut(s)	314, 801
XspI	CTAG	2 cut(s)	561, 579
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.