Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Forward (+)

4109375 .. 4110849

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGAAGATGATAGAACCACGGGACAACACAAGAGAATCAGAAGATGAGGATGCGTTAAAGCTTCCAGGGTTTAGGTTTCATCCGACGGATGAGGAGCTTGTAGGGTATTATCTCTCTAAAAAAGTGCTTCTCAAAAAAACGAGCAAGATTGATGAGATCGTCAGCCAAATTGATATCTATAAATTTGATCCGTGGGATCTTCCAAGGTCGAGGAATACAGAGAAGGAGAGCTACTTCTTTTGTAAGAGAGGAAGGAAATACAGAAACAGCATAAGACCGAACCGAGTGACTGGTTCCGGTTTCTGGAAAGCCACAGGGATAGACAAGCCTGTCTATTCCGATGGATCCAACAAAGCCGTGATCGGTCTAAAGAAGACACTCGTTTATTACCTAGGAAGCGCCGGGAAAGGAAACAAGACGGATTGGATGATGCACGAGTTTCGTCTCCCTACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAACCCTACTCCAACTTCCTTGCTACACGCGGAAGTATGGACGTTATGCCGGATATTTAAGAGAACTGTGTCTAGTCGAAAATACACTCCGGACTGGAGAGAATTAGCAAATGGCAAACGTGTGAAGCAGCAACAATCTAATTACCAAGAAGCTTATATAAATTTTGGGGACAATGAAAGTAGTAGTAGTACCAACGTGATGAACGTTAGGGAAGGCAAAGGGAACTACGAGAGAAGCGTTTTCCAGCTTCAGCAAACGCCTTATCAACATCAAAACCAGCCAATTCTCATGGACACCACACACGTTGATTCGTTTCAACATTTCTCCAACGATAACATTCACCATGAAACCTACGAGACTTGGCCGGACGAGCTTCGATCGGTTGTGGAATTTGCTTTCCCACCTTCTTTTCTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

303

Amino Acids

35.2

Weight (kDa)

8.61

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 150	1.4e-42	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccII	CGCG	1 cut(s)	521
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	1 cut(s)	521
AclI	AACGTT	1 cut(s)	696
AclWI	GGATC	4 cut(s)	185, 207, 342, 355
AcoI	YGGCCR	1 cut(s)	854
AcsI	RAATTY	3 cut(s)	185, 652, 881
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	2 cut(s)	610, 793
AgsI	TTSAA	1 cut(s)	809
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	6 cut(s)	64, 100, 234, 644, 739, 865
AluI	AGCT	6 cut(s)	64, 100, 234, 644, 739, 865
Alw26I	GTCTC	2 cut(s)	452, 842
AlwI	GGATC	4 cut(s)	185, 207, 342, 355
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	2 cut(s)	478, 854
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	3 cut(s)	185, 652, 881
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	2 cut(s)	406, 474
AsuHPI	GGTGA	1 cut(s)	824
AvrII	CCTAGG	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	406, 474
BcoDI	GTCTC	2 cut(s)	452, 842
BfaI	CTAG	2 cut(s)	395, 564
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	1 cut(s)	620
BlnI	CCTAGG	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	3 cut(s)	69, 406, 474
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	298, 349
BmrFI	CCNGG	3 cut(s)	69, 406, 474
BmsI	GCATC	2 cut(s)	43, 423
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	607
BpuMI	CCSGG	2 cut(s)	406, 474
BsaJI	CCNNGG	6 cut(s)	20, 68, 194, 206, 394, 472
BsaWI	WCCGGW	2 cut(s)	299, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	298, 590
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	6 cut(s)	20, 68, 194, 206, 394, 472
BseGI	GGATG	4 cut(s)	58, 82, 97, 435
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	298, 590
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	872
BshFI	GGCC	2 cut(s)	480, 856
BsiEI	CGRYCG	1 cut(s)	872
BsiSI	CCGG	6 cut(s)	300, 405, 474, 541, 581, 857
BslFI	GGGAC	2 cut(s)	38, 674
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	452, 842
BsmBI	CGTCTC	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	38, 674
BsnI	GGCC	2 cut(s)	480, 856
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	2 cut(s)	480, 856
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	2 cut(s)	298, 349
BspPI	GGATC	4 cut(s)	185, 207, 342, 355
BsrI	ACTGG	2 cut(s)	298, 590
BssECI	CCNNGG	6 cut(s)	20, 68, 194, 206, 394, 472
BssMI	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	2 cut(s)	206, 394
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	559
BstDEI	CTNAG	1 cut(s)	905
BstDSI	CCRYGG	2 cut(s)	20, 194
BstF5I	GGATG	4 cut(s)	58, 82, 97, 435
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	6 cut(s)	162, 193, 202, 350, 366, 872
BstMAI	GTCTC	2 cut(s)	452, 842
BstMBI	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
BstMCI	CGRYCG	1 cut(s)	872
BstMWI	GCNNNNNNNGC	1 cut(s)	862
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	3 cut(s)	67, 404, 472
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	199, 347
BstYI	RGATCY	2 cut(s)	199, 347
BsuRI	GGCC	2 cut(s)	480, 856
BtgI	CCRYGG	2 cut(s)	20, 194
BtsCI	GGATG	4 cut(s)	58, 82, 97, 435
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	681
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	2 cut(s)	781, 836
CviQI	GTAC	1 cut(s)	681
DdeI	CTNAG	1 cut(s)	905
DpnI	GATC	6 cut(s)	161, 192, 201, 349, 365, 871
DpnII	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	854
Eco130I	CCWWGG	2 cut(s)	206, 394
Eco32I	GATATC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	206, 394
ErhI	CCWWGG	2 cut(s)	206, 394
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	2 cut(s)	784, 839
FaiI	YATR	8 cut(s)	183, 275, 529, 538, 648, 650, 782, 837
FaqI	GGGAC	2 cut(s)	38, 674
FatI	CATG	2 cut(s)	780, 835
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	4 cut(s)	65, 69, 104, 442
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	2 cut(s)	395, 564
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	620
GsuI	CTGGAG	1 cut(s)	607
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	480, 856
HapII	CCGG	6 cut(s)	300, 405, 474, 541, 581, 857
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	784, 839
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	62, 642
HinfI	GANTC	2 cut(s)	38, 800
HpaII	CCGG	6 cut(s)	300, 405, 474, 541, 581, 857
HphI	GGTGA	1 cut(s)	824
Hpy188I	TCNGA	3 cut(s)	43, 87, 343
Hpy188III	TCNNGA	2 cut(s)	307, 581
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	220, 249, 698, 906
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	5 cut(s)	533, 610, 687, 696, 795
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	862
HpyF3I	CTNAG	1 cut(s)	905
HpySE526I	ACGT	5 cut(s)	533, 610, 687, 696, 795
Hsp92II	CATG	2 cut(s)	784, 839
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	580
Kzo9I	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	2 cut(s)	43, 423
MaeI	CTAG	2 cut(s)	395, 564
MaeII	ACGT	5 cut(s)	533, 610, 687, 696, 795
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	6 cut(s)	161, 192, 201, 349, 365, 871
MboI	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
MboII	GAAGA	4 cut(s)	19, 56, 194, 388
MflI	RGATCY	2 cut(s)	199, 347
MluCI	AATT	7 cut(s)	171, 185, 593, 631, 652, 774, 881
MmeI	TCCRAC	4 cut(s)	110, 375, 527, 843
MnlI	CCTC	4 cut(s)	43, 88, 207, 245
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	2 cut(s)	59, 549
MspI	CCGG	6 cut(s)	300, 405, 474, 541, 581, 857
MspR9I	CCNGG	3 cut(s)	69, 406, 474
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	862
NciI	CCSGG	2 cut(s)	406, 474
NdeII	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
NlaIII	CATG	2 cut(s)	784, 839
NlaIV	GGNNCC	2 cut(s)	298, 349
NmuCI	GTSAC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	2 cut(s)	693, 726
PfeI	GAWTC	2 cut(s)	38, 800
PkrI	GCNGC	1 cut(s)	621
Ple19I	CGATCG	1 cut(s)	872
Psp1406I	AACGTT	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	298, 349
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	199, 347
PvuI	CGATCG	1 cut(s)	872
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
SaqAI	TTAA	2 cut(s)	59, 549
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	6 cut(s)	159, 190, 199, 347, 363, 869
Sau96I	GGNCC	1 cut(s)	479
ScrFI	CCNGG	3 cut(s)	69, 406, 474
SfaNI	GCATC	2 cut(s)	43, 423
SfcI	CTRYAG	1 cut(s)	453
Sse9I	AATT	7 cut(s)	171, 185, 593, 631, 652, 774, 881
SsiI	CCGC	1 cut(s)	521
SspMI	CTAG	2 cut(s)	395, 564
StyD4I	CCNGG	3 cut(s)	67, 404, 472
StyI	CCWWGG	2 cut(s)	206, 394
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	5 cut(s)	536, 613, 690, 699, 798
TaqI	TCGA	3 cut(s)	212, 568, 868
TaqII	GACCGA	2 cut(s)	295, 356
TasI	AATT	7 cut(s)	171, 185, 593, 631, 652, 774, 881
TfiI	GAWTC	2 cut(s)	38, 800
Tru1I	TTAA	2 cut(s)	59, 549
Tru9I	TTAA	2 cut(s)	59, 549
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	71, 681, 707, 852
TspGWI	ACGGA	3 cut(s)	104, 183, 437
XapI	RAATTY	3 cut(s)	185, 652, 881
XmaJI	CCTAGG	1 cut(s)	394
XspI	CTAG	2 cut(s)	395, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.