Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Forward (+)

20316913 .. 20318399

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATGCACGAATTTCGCCGTCCATCCACCAATGACAACAACAATGTTCACACTAACCACACCTCCTGCACTGCTATATCACACACTGATCCTCAAGAAGCTGAAATTTGGACATTGTGTCGGATATTCAAGAGATCTGTGTCACATAGAAAGTATACACCAGACTGGAGAGAATTGTCTGCTAAACAATCCAGCTCTAAGAAATGCAATACGACTGATCAAGATCGTCATCAAGAGCCCACAAACATCAATCGAGAATCTTATATCAATTTTGGTGCTTCAACCATTTGCTACGAAGAGAAGAAGCCCAATGTTGTGAACCATACTAATTATAACAACGGAAGCAACAGTAACCAGACATTGCAGAATGTAGGTCAGTTCAGCTCCGGAATGACTACTGCTACGCATCCATGCAACATGGATTCGTTCACATCGAGCTATTCATATGCAGATATTGAGAATCATGACTTTTTTAACGACAACTGGGAAGAGTTCAAATCAGTTGTACAGCTTGCTCTTGACCCATCGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

178

Amino Acids

20.53

Weight (kDa)

5.96

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	386
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	11, 105
AfaI	GTAC	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	130, 282, 496
AhdI	GACNNNNNGTC	1 cut(s)	117
AluBI	AGCT	5 cut(s)	101, 195, 384, 438, 511
AluI	AGCT	5 cut(s)	101, 195, 384, 438, 511
AlwI	GGATC	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	11, 105
ArsI	GACNNNNNNTTYG	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	240
BccI	CCATC	2 cut(s)	31, 532
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	217
BglII	AGATCT	1 cut(s)	134
BmeRI	GACNNNNNGTC	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	78
BsaBI	GATNNNNATC	2 cut(s)	222, 228
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	2 cut(s)	170, 488
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	222, 228
BseAI	TCCGGA	1 cut(s)	386
BseGI	GGATG	2 cut(s)	23, 406
BseJI	GATNNNNATC	2 cut(s)	222, 228
BseMI	GCAATG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	170, 488
BsgI	GTGCAG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	88, 134, 217, 223
BspEI	TCCGGA	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	463
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	170, 488
BssMI	GATC	4 cut(s)	88, 134, 217, 223
BssNAI	GTATAC	1 cut(s)	156
Bst1107I	GTATAC	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	2 cut(s)	291, 483
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	23, 406
BstKTI	GATC	4 cut(s)	91, 137, 220, 226
BstMBI	GATC	4 cut(s)	88, 134, 217, 223
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZ17I	GTATAC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	23, 406
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 84
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	3 cut(s)	411, 418, 464
CviJI	RGCY	7 cut(s)	101, 195, 238, 307, 384, 438, 511
CviKI_1	RGCY	7 cut(s)	101, 195, 238, 307, 384, 438, 511
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	90, 136, 219, 225
DpnII	GATC	4 cut(s)	88, 134, 217, 223
DriI	GACNNNNNGTC	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	291, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	117
EarI	CTCTTC	2 cut(s)	291, 483
Eco24I	GRGCYC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	3 cut(s)	414, 421, 467
FatI	CATG	3 cut(s)	410, 417, 463
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	155
FokI	GGATG	2 cut(s)	10, 393
FriOI	GRGCYC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	187
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	3 cut(s)	414, 421, 467
HinfI	GANTC	3 cut(s)	257, 422, 460
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	4 cut(s)	49, 156, 319, 429
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	8 cut(s)	95, 130, 221, 233, 254, 387, 464, 518
Hpy8I	GTNNAC	4 cut(s)	49, 156, 319, 429
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	7, 69, 207, 364, 414, 449
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	414, 421, 467
Kpn2I	TCCGGA	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	88, 134, 217, 223
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	7 cut(s)	79, 151, 174, 205, 368, 400, 469
LweI	GCATC	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	141, 350
MalI	GATC	4 cut(s)	90, 136, 219, 225
MboI	GATC	4 cut(s)	88, 134, 217, 223
MboII	GAAGA	3 cut(s)	308, 313, 500
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	5 cut(s)	11, 105, 173, 268, 328
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	2 cut(s)	73, 102
MroI	TCCGGA	1 cut(s)	386
MseI	TTAA	1 cut(s)	474
MspI	CCGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	4 cut(s)	88, 134, 217, 223
NlaIII	CATG	3 cut(s)	414, 421, 467
NmuCI	GTSAC	1 cut(s)	141
PagI	TCATGA	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	257, 422, 460
PsiI	TTATAA	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	88, 134, 217, 223
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	7 cut(s)	65, 103, 197, 376, 386, 440, 513
SfaNI	GCATC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	5 cut(s)	11, 105, 173, 268, 328
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	253, 434
TasI	AATT	5 cut(s)	11, 105, 173, 268, 328
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	3 cut(s)	257, 422, 460
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	76, 91
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	76, 91
XapI	RAATTY	2 cut(s)	11, 105
XmiI	GTMKAC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.