Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Forward (+)

7730640 .. 7733031

Gene Structure 2392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G138500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACAGCAACTACACCAGCAGTAAGGATGATCATCAATATATTGATGAAGATGATGTTCAACTTCCAGGATTTCGGTTTCACCCGACAGATGAAGAACTTGTGGAGTTCTATCTTCACCGGAAGGTTGAGAAGAAAGCAATCAGCATAGAGCTCATCAAATCCATTGACATCTACAAGCATGATCCTTGGGATCTTCCAAAAGCGATAAATACAGCAGGAGAGAAGGAATGGTACTTCTTCTGCAAAAGAGGGAGAAAGTACAAGAACAGCATCAGACCCAACAGAGTTACAGGCTCTGGATTTTGGAAGGCAACTGGGATTGACAAGCCGATACATTCCCATGGAGGACAAGGCCATGCCTGCATTGGCCTCAAGAAAACATTGGTTTACTACCGTGGAAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAATTTCGCCTTCCCAATCCGGCCAGTTCTAATGAATACATTCACCGCAGCTCCAACACTAAGAACATCAGTAGTACTGATCCTCAACAAGAAGCTGAAATATGGACATTATGCCGGATATTCAAGAGAAATGTCTCGTACAAAAAATATACAGCAGATTGTAGAGGGCTATCCGGAGCTAAACGCCATCCAATGGACACAGTGAGCTCCAAGAAATGCACAAGTGATCAAGATGACCTAGATCAGTCTAACAATTACATCAGTTTTGGTACTTCAGACAATATTATTTGCTACGAAGAGAAGAAGCCTGTTGTGAACCATACCAACATGAACAACTTCAATGGAAGCAACCAGCAGCTGCATGCAGTAGGCCAGTTGAGCTCCAACATGCCTGCTACATATCCGTACATGGAGACTTTCTCAAACTTTTCGTATCAAGATCTTGAGAATGAGCTTTTGAATGAGAACTGGGATGAGCTTAGATCCGCCGCCGTCCATCTTGCTTTTGATCCAACGTTTCTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

323

Amino Acids

37.05

Weight (kDa)

6.67

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	614
AciI	CCGC	3 cut(s)	487, 927, 930
AclI	AACGTT	1 cut(s)	956
AclWI	GGATC	5 cut(s)	179, 201, 515, 918, 944
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	6 cut(s)	236, 263, 517, 581, 712, 848
AfiI	CCNNNNNNNGG	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	62, 565, 781, 901
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	9 cut(s)	154, 492, 536, 620, 648, 799, 822, 895, 919
AluI	AGCT	9 cut(s)	154, 492, 536, 620, 648, 799, 822, 895, 919
Alw21I	GWGCWC	3 cut(s)	156, 650, 824
Alw26I	GTCTC	2 cut(s)	580, 848
AlwI	GGATC	5 cut(s)	179, 201, 515, 918, 944
AlwNI	CAGNNNCTG	2 cut(s)	299, 799
Aor13HI	TCCGGA	1 cut(s)	614
AoxI	GGCC	4 cut(s)	355, 370, 462, 811
ApeKI	GCWGC	3 cut(s)	489, 796, 799
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	2 cut(s)	480, 776
AsuHPI	GGTGA	3 cut(s)	74, 110, 476
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	3 cut(s)	156, 650, 824
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
Bbv12I	GWGCWC	3 cut(s)	156, 650, 824
BbvI	GCAGC	3 cut(s)	501, 786, 808
BccI	CCATC	2 cut(s)	636, 945
BceAI	ACGGC	1 cut(s)	917
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	2 cut(s)	31, 667
BcoDI	GTCTC	2 cut(s)	580, 848
BfaI	CTAG	1 cut(s)	680
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	4 cut(s)	490, 797, 800, 930
BlsI	GCNGC	4 cut(s)	491, 798, 801, 931
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	2 cut(s)	327, 919
BmsI	GCATC	2 cut(s)	282, 426
BmuI	ACTGGG	2 cut(s)	327, 919
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpuEI	CTTGAG	2 cut(s)	359, 905
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	188, 343, 397
BsaWI	WCCGGW	2 cut(s)	120, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	4 cut(s)	322, 465, 814, 914
Bse8I	GATNNNNATC	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	188, 343, 397
BseGI	GGATG	4 cut(s)	34, 438, 628, 919
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseNI	ACTGG	4 cut(s)	322, 465, 814, 914
BseXI	GCAGC	3 cut(s)	501, 786, 808
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	4 cut(s)	357, 372, 464, 813
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	3 cut(s)	156, 650, 824
BsiSI	CCGG	4 cut(s)	121, 461, 556, 615
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	580, 848
BsnI	GGCC	4 cut(s)	357, 372, 464, 813
Bsp1286I	GDGCHC	3 cut(s)	156, 650, 824
Bsp13I	TCCGGA	1 cut(s)	614
Bsp143I	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	3 cut(s)	487, 927, 930
BspANI	GGCC	4 cut(s)	357, 372, 464, 813
BspEI	TCCGGA	1 cut(s)	614
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	5 cut(s)	179, 201, 515, 918, 944
BspT107I	GGYRCC	1 cut(s)	416
BsrI	ACTGG	4 cut(s)	322, 465, 814, 914
BssECI	CCNNGG	3 cut(s)	188, 343, 397
BssMI	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
BssT1I	CCWWGG	2 cut(s)	188, 343
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	398, 643
Bst6I	CTCTTC	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	364, 409, 804, 834
BstDEI	CTNAG	2 cut(s)	501, 920
BstDSI	CCRYGG	2 cut(s)	343, 397
BstF5I	GGATG	4 cut(s)	34, 438, 628, 919
BstKTI	GATC	9 cut(s)	34, 187, 196, 523, 670, 685, 883, 926, 952
BstMAI	GTCTC	2 cut(s)	580, 848
BstMBI	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 819
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	2 cut(s)	806, 832
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	501, 786, 808
BstX2I	RGATCY	3 cut(s)	193, 880, 923
BstYI	RGATCY	3 cut(s)	193, 880, 923
BsuRI	GGCC	4 cut(s)	357, 372, 464, 813
BtgI	CCRYGG	2 cut(s)	343, 397
BtsCI	GGATG	4 cut(s)	34, 438, 628, 919
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	4 cut(s)	364, 409, 804, 834
CaiI	CAGNNNCTG	2 cut(s)	299, 799
Csp6I	GTAC	6 cut(s)	235, 262, 516, 580, 711, 847
CviAII	CATG	7 cut(s)	182, 344, 359, 769, 803, 829, 850
CviQI	GTAC	6 cut(s)	235, 262, 516, 580, 711, 847
DdeI	CTNAG	2 cut(s)	501, 920
DpnI	GATC	9 cut(s)	33, 186, 195, 522, 669, 684, 882, 925, 951
DpnII	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	916
Ecl136II	GAGCTC	3 cut(s)	154, 648, 822
Eco130I	CCWWGG	2 cut(s)	188, 343
Eco24I	GRGCYC	3 cut(s)	156, 650, 824
Eco53kI	GAGCTC	3 cut(s)	154, 648, 822
Eco57I	CTGAAG	1 cut(s)	699
EcoICRI	GAGCTC	3 cut(s)	154, 648, 822
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	188, 343
EcoT38I	GRGCYC	3 cut(s)	156, 650, 824
ErhI	CCWWGG	2 cut(s)	188, 343
FaeI	CATG	7 cut(s)	185, 347, 362, 772, 806, 832, 853
FatI	CATG	7 cut(s)	181, 343, 358, 768, 802, 828, 849
FbaI	TGATCA	2 cut(s)	31, 667
Fnu4HI	GCNGC	4 cut(s)	490, 797, 800, 930
FokI	GGATG	4 cut(s)	41, 445, 615, 926
FriOI	GRGCYC	3 cut(s)	156, 650, 824
Fsp4HI	GCNGC	4 cut(s)	490, 797, 800, 930
FspBI	CTAG	1 cut(s)	680
GluI	GCNGC	4 cut(s)	490, 797, 800, 930
HaeIII	GGCC	4 cut(s)	357, 372, 464, 813
HapII	CCGG	4 cut(s)	121, 461, 556, 615
Hin1II	CATG	7 cut(s)	185, 347, 362, 772, 806, 832, 853
HpaII	CCGG	4 cut(s)	121, 461, 556, 615
HphI	GGTGA	3 cut(s)	74, 110, 476
Hpy166II	GTNNAC	2 cut(s)	391, 757
Hpy188I	TCNGA	2 cut(s)	278, 718
Hpy188III	TCNNGA	7 cut(s)	300, 376, 565, 615, 671, 878, 884
Hpy8I	GTNNAC	2 cut(s)	391, 757
HpyAV	CCTTC	4 cut(s)	118, 220, 304, 461
HpyCH4III	ACNGT	2 cut(s)	398, 643
HpyCH4IV	ACGT	1 cut(s)	956
HpyCH4V	TGCA	7 cut(s)	246, 366, 407, 439, 660, 802, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 819
HpyF3I	CTNAG	2 cut(s)	501, 920
HpySE526I	ACGT	1 cut(s)	956
Hsp92II	CATG	7 cut(s)	185, 347, 362, 772, 806, 832, 853
Kpn2I	TCCGGA	1 cut(s)	614
Ksp22I	TGATCA	2 cut(s)	31, 667
Kzo9I	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
LmnI	GCTCC	4 cut(s)	497, 617, 653, 827
Lsp1109I	GCAGC	3 cut(s)	501, 786, 808
LweI	GCATC	2 cut(s)	282, 426
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	1 cut(s)	956
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	9 cut(s)	33, 186, 195, 522, 669, 684, 882, 925, 951
MboI	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
MboII	GAAGA	8 cut(s)	62, 107, 107, 145, 188, 232, 749, 754
MflI	RGATCY	3 cut(s)	193, 880, 923
MhlI	GDGCHC	3 cut(s)	156, 650, 824
MluCI	AATT	2 cut(s)	443, 694
MmeI	TCCRAC	2 cut(s)	519, 849
MnlI	CCTC	5 cut(s)	245, 341, 383, 534, 599
MroI	TCCGGA	1 cut(s)	614
MroXI	GAANNNNTTC	2 cut(s)	480, 776
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	4 cut(s)	121, 461, 556, 615
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	363, 819
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
NlaIII	CATG	7 cut(s)	185, 347, 362, 772, 806, 832, 853
NlaIV	GGNNCC	1 cut(s)	418
NspI	RCATGY	2 cut(s)	806, 832
PaeI	GCATGC	1 cut(s)	806
PdmI	GAANNNNTTC	2 cut(s)	480, 776
PflMI	CCANNNNNTGG	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	4 cut(s)	491, 798, 801, 931
Psp124BI	GAGCTC	3 cut(s)	156, 650, 824
Psp1406I	AACGTT	1 cut(s)	956
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	418
PstNI	CAGNNNCTG	2 cut(s)	299, 799
PsuI	RGATCY	3 cut(s)	193, 880, 923
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	6 cut(s)	236, 263, 517, 581, 712, 848
RsaNI	GTAC	6 cut(s)	235, 262, 516, 580, 711, 847
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	3 cut(s)	156, 650, 824
SatI	GCNGC	4 cut(s)	490, 797, 800, 930
Sau3AI	GATC	9 cut(s)	31, 184, 193, 520, 667, 682, 880, 923, 949
ScaI	AGTACT	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	3 cut(s)	156, 650, 824
SfaNI	GCATC	2 cut(s)	282, 426
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	374, 884
SmoI	CTYRAG	2 cut(s)	374, 884
SphI	GCATGC	1 cut(s)	806
Sse9I	AATT	2 cut(s)	443, 694
SsiI	CCGC	3 cut(s)	487, 927, 930
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	680
SstI	GAGCTC	3 cut(s)	156, 650, 824
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	2 cut(s)	188, 343
TaaI	ACNGT	2 cut(s)	398, 643
TaiI	ACGT	1 cut(s)	959
TasI	AATT	2 cut(s)	443, 694
TatI	WGTACW	2 cut(s)	261, 515
TauI	GCSGC	1 cut(s)	932
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	3 cut(s)	489, 796, 799
TspDTI	ATGAA	4 cut(s)	63, 108, 489, 785
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	634
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	2 cut(s)	806, 832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	2 cut(s)	480, 776
XspI	CTAG	1 cut(s)	680
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.