Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Forward (+)

9796130 .. 9798450

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATGGAAAAATTACTACCTGCAAGGATGATCATCATGATTATCATCAGGATCATGATGATGAGGATGTTACACTACCGGGATTCAGGTTTCACCCAACAGATGAAGAACTTGTTGGGTTCTATCTCCGCCGGAAGATTCAGAAGAAACCCATCAGCTTAGAGCTCATCAAATCAATTGATATCTACAAGCATGATCCTTGGGATCTTCCAAAAGCGACAACTACTGCCGGAGACAAAGAGTGGTACTTTTTCTGCAGAAGAGGAAGAAAGTACAAGAACAGTATCAGACCTAATAGAGTAACCGGGTCTGGGTTTTGGAAAGCAACTGGGATAGACAAACCAATTCATGATTCCAACATCAACTGCATTGGACTGAAGAAAACTCTGGTTTACTACCGGGGCAGTGCCGGAAAAGGCACCAAAACTGATTGGATGATGCACGAATTTCGCTTTCCCTCCGCCAATGATGTCAACAACAATGTCCACACTATCCGCACCTCCTGCACCGCTATATCGCAGAGTGCTAATCTTCAAGAAGCTGAAATTTGGACACTGTGCCGAATATTCAAGAGAAATGTGTCGCATAAAAAGTATACACCGGACTGGAGAGAGTTGTCTGCTAAACAATCCAGCTCAAAGAAATGCAATATGACTACCGATCAAGATCTTAATCAAGAGTCCAGGAACATTAACCGAGAAGCTTATATCGATTTTGGTGCTTCAAACATTTGCTACGAAGAGAAGAAGCCGAATGTTCTCAACCACACTAAATATAACAATGCAAGCAACATTAATAACCAGACATTGCAGAATGCAGGTCATCAGTTCATCTCCGGAACAACGACGACTACTGCTACACATCCATACAACATGGATTCCTTCACATCGAGCTATTCATATGCCGATATCGAGAATCATGACTTTTTTAACGAAAACTGGGAGGAGTTCAGATCAGTTATACAGCTCGCTCTTGATCCGTCGTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

331

Amino Acids

38.3

Weight (kDa)

7.66

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	27 - 151	2.4e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	29, 809
AccB1I	GGYRCC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	596
AccIII	TCCGGA	1 cut(s)	836
AciI	CCGC	4 cut(s)	130, 462, 496, 510
AclWI	GGATC	4 cut(s)	60, 191, 213, 971
AcsI	RAATTY	2 cut(s)	446, 546
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	248, 275
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	536, 571, 726
AjnI	CCWGG	1 cut(s)	683
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 337, 369
AluBI	AGCT	7 cut(s)	159, 166, 542, 636, 704, 894, 967
AluI	AGCT	7 cut(s)	159, 166, 542, 636, 704, 894, 967
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	4 cut(s)	60, 191, 213, 971
Aor13HI	TCCGGA	1 cut(s)	836
ApoI	RAATTY	2 cut(s)	446, 546
AseI	ATTAAT	1 cut(s)	795
AsuC2I	CCSGG	3 cut(s)	81, 307, 401
AsuHPI	GGTGA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	161
BcgI	CGANNNNNNTGC	4 cut(s)	431, 465, 701, 735
BciT130I	CCWGG	1 cut(s)	685
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	81, 307, 401
BcoDI	GTCTC	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	256
BfuAI	ACCTGC	2 cut(s)	29, 809
BglII	AGATCT	1 cut(s)	667
Bme1390I	CCNGG	4 cut(s)	81, 307, 401, 685
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	4 cut(s)	81, 307, 401, 685
BmrI	ACTGGG	2 cut(s)	339, 949
BmsI	GCATC	1 cut(s)	429
BmuI	ACTGGG	2 cut(s)	339, 949
BpmI	CTGGAG	1 cut(s)	628
BpuMI	CCSGG	3 cut(s)	81, 307, 401
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	4 cut(s)	33, 45, 666, 672
BsaJI	CCNNGG	2 cut(s)	200, 400
BsaWI	WCCGGW	2 cut(s)	601, 836
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	334, 611, 944
Bse3DI	GCAATG	1 cut(s)	806
Bse8I	GATNNNNATC	4 cut(s)	33, 45, 666, 672
BseAI	TCCGGA	1 cut(s)	836
BseBI	CCWGG	1 cut(s)	685
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	200, 400
BseGI	GGATG	5 cut(s)	10, 34, 73, 441, 862
BseJI	GATNNNNATC	4 cut(s)	33, 45, 666, 672
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	806
BseNI	ACTGG	3 cut(s)	334, 611, 944
BseRI	GAGGAG	1 cut(s)	959
BsgI	GTGCAG	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	419
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	8 cut(s)	80, 133, 231, 306, 400, 411, 602, 837
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	836
Bsp143I	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
BspACI	CCGC	4 cut(s)	130, 462, 496, 510
BspDI	ATCGAT	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	836
BspHI	TCATGA	4 cut(s)	37, 55, 349, 919
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	260
BspMI	ACCTGC	2 cut(s)	29, 809
BspPI	GGATC	4 cut(s)	60, 191, 213, 971
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	806
BsrI	ACTGG	3 cut(s)	334, 611, 944
BssECI	CCNNGG	2 cut(s)	200, 400
BssMI	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
BssNAI	GTATAC	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	200
Bst1107I	GTATAC	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	2 cut(s)	284, 558
Bst6I	CTCTTC	2 cut(s)	256, 735
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	787, 969
BstDEI	CTNAG	1 cut(s)	160
BstF5I	GGATG	5 cut(s)	10, 34, 73, 441, 862
BstKTI	GATC	8 cut(s)	34, 55, 199, 208, 664, 670, 956, 979
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	4 cut(s)	79, 305, 399, 683
BstSFI	CTRYAG	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	205, 667
BstYI	RGATCY	2 cut(s)	205, 667
BstZ17I	GTATAC	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	711
BsuTUI	ATCGAT	1 cut(s)	711
BtsCI	GGATG	5 cut(s)	10, 34, 73, 441, 862
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	412, 554
BveI	ACCTGC	2 cut(s)	29, 809
Cac8I	GCNNGC	2 cut(s)	787, 969
CciI	TCATGA	4 cut(s)	37, 55, 349, 919
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	2 cut(s)	247, 274
CviAII	CATG	6 cut(s)	38, 56, 194, 350, 874, 920
CviJI	RGCY	8 cut(s)	159, 166, 542, 636, 704, 751, 894, 967
CviKI_1	RGCY	8 cut(s)	159, 166, 542, 636, 704, 751, 894, 967
CviQI	GTAC	2 cut(s)	247, 274
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	8 cut(s)	33, 54, 198, 207, 663, 669, 955, 978
DpnII	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
Eam1104I	CTCTTC	2 cut(s)	256, 735
EarI	CTCTTC	2 cut(s)	256, 735
EciI	GGCGGA	2 cut(s)	119, 451
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	2 cut(s)	184, 910
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	683
EcoRV	GATATC	2 cut(s)	184, 910
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	6 cut(s)	41, 59, 197, 353, 877, 923
FatI	CATG	6 cut(s)	37, 55, 193, 349, 873, 919
FauNDI	CATATG	1 cut(s)	901
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	596
FokI	GGATG	5 cut(s)	17, 41, 80, 448, 849
FriOI	GRGCYC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	628
HapII	CCGG	8 cut(s)	80, 133, 231, 306, 400, 411, 602, 837
Hin1II	CATG	6 cut(s)	41, 59, 197, 353, 877, 923
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	6 cut(s)	84, 139, 353, 680, 878, 916
HpaII	CCGG	8 cut(s)	80, 133, 231, 306, 400, 411, 602, 837
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	4 cut(s)	394, 475, 487, 597
Hpy188I	TCNGA	3 cut(s)	144, 290, 953
Hpy8I	GTNNAC	4 cut(s)	394, 475, 487, 597
Hpy99I	CGWCG	2 cut(s)	850, 985
HpyAV	CCTTC	1 cut(s)	892
HpyCH4III	ACNGT	2 cut(s)	284, 558
HpyCH4V	TGCA	9 cut(s)	24, 258, 369, 442, 507, 648, 785, 811, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	6 cut(s)	41, 59, 197, 353, 877, 923
Kpn2I	TCCGGA	1 cut(s)	836
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
LweI	GCATC	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	70, 301
MalI	GATC	8 cut(s)	33, 54, 198, 207, 663, 669, 955, 978
MboI	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	2 cut(s)	205, 667
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	5 cut(s)	12, 177, 345, 446, 546
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	5 cut(s)	58, 257, 469, 511, 937
MroI	TCCGGA	1 cut(s)	836
MseI	TTAA	4 cut(s)	672, 693, 795, 930
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	8 cut(s)	80, 133, 231, 306, 400, 411, 602, 837
MspR9I	CCNGG	4 cut(s)	81, 307, 401, 685
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	504
NciI	CCSGG	3 cut(s)	81, 307, 401
NdeI	CATATG	1 cut(s)	901
NdeII	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
NlaIII	CATG	6 cut(s)	41, 59, 197, 353, 877, 923
NlaIV	GGNNCC	1 cut(s)	421
PagI	TCATGA	4 cut(s)	37, 55, 349, 919
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	5 cut(s)	84, 139, 353, 878, 916
PfoI	TCCNGGA	1 cut(s)	683
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
PshBI	ATTAAT	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	205, 667
RsaI	GTAC	2 cut(s)	248, 275
RsaNI	GTAC	2 cut(s)	247, 274
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	672, 693, 795, 930
Sau3AI	GATC	8 cut(s)	31, 52, 196, 205, 661, 667, 953, 976
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	4 cut(s)	81, 307, 401, 685
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	5 cut(s)	12, 177, 345, 446, 546
SsiI	CCGC	4 cut(s)	130, 462, 496, 510
SspI	AATATT	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	79, 305, 399, 683
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	284, 558
TaqI	TCGA	3 cut(s)	711, 890, 912
TasI	AATT	5 cut(s)	12, 177, 345, 446, 546
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	5 cut(s)	84, 139, 353, 878, 916
Tru1I	TTAA	4 cut(s)	672, 693, 795, 930
Tru9I	TTAA	4 cut(s)	672, 693, 795, 930
TscAI	CASTG	2 cut(s)	412, 561
TspDTI	ATGAA	4 cut(s)	120, 338, 820, 888
TspGWI	ACGGA	1 cut(s)	969
TspRI	CASTG	2 cut(s)	412, 561
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	2 cut(s)	446, 546
XmiI	GTMKAC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.