Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Reverse (-)

20609698 .. 20611812

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATAGCACATATTATAGTCCTAGCAATAAGGATGATCACCAGTATACTGATGATGAAGATGATGTCCAACTACCAGGATTTCGGTTTCACCCAACAGATGAAGAACTTGTAGACTTCTATCTTCGTCGGAAGATTCAGAAGAAACCGATAAGCTTAGAGCTCATCAAATCAATTGATATCTACAAGCATGATCCTTGGGATCTTCCAATATTTATGTGTGCAAAAGCCGCAGGAGATAAGGAATGGTACTTCTTCTGCAAAAGAGGGAGAAAGTACAAGAACAGCATCAGACCCAACAGAGTAACAGGCTCTGGATTTTGGAAGGCAACTGGAATCGACAAGCCGATACATTCCCACGGAGGAGAAGGCCATGACTGCATTGGCCTAAAGAAAACATTGGTTTACTACCGTGGAAGTGCAGGCAAAGGCAGCAAAACCGATTGGATGATGCATGAGTTTCGCCTTCCTAATCCCTCCAGTTCGAATGAATACAAGAACCGAAGCTCTAACACTAAGAATATGAATACTGATCCTCAACAAGAAGCTGAAATATGGACACTGTGTCGGATATTCAAGAGAAACGTTTCATACAAAAAGTACACCCCGGATTGGAGATATCTATCTGCAGCTAAACGTCATCCAACGGACACCGCAAACTCCAAAAATTTTGTTACCAATCAACAAGATCATCTCGATCAATCTAACACTTACATCAGTTTCGGTGCTCCAGATATTTGCTACGAGGAGAAGAAGCCTGTTGTAAATCATACCAACAATACTAACAACATAATTAATGGAAATCACCAGTTGCATCCGCATGCAGTAGGCCAGTTGAGCTCCAACATGCAGCAGCCTGCTTCAACGCATCCGTACATGGAAACGTTCTCAAAATTTTCGTTTCAAGATCTTGAGGACGATCTTTTGAATGAAAATTGGGATGAGCTTAGATCAGTCGTACAACAGCTTGCTTTTGATCCGACGGCGTTTCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

333

Amino Acids

38.58

Weight (kDa)

6.92

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	47, 114
AciI	CCGC	3 cut(s)	231, 654, 818
AclI	AACGTT	2 cut(s)	585, 884
AclWI	GGATC	4 cut(s)	188, 210, 527, 971
AcsI	RAATTY	2 cut(s)	667, 893
AfaI	GTAC	5 cut(s)	251, 278, 602, 875, 960
AfiI	CCNNNNNNNGG	1 cut(s)	612
AgsI	TTSAA	4 cut(s)	577, 864, 905, 928
AhdI	GACNNNNNGTC	1 cut(s)	564
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	8 cut(s)	156, 163, 507, 548, 632, 840, 946, 967
AluI	AGCT	8 cut(s)	156, 163, 507, 548, 632, 840, 946, 967
Alw21I	GWGCWC	3 cut(s)	165, 730, 842
AlwI	GGATC	4 cut(s)	188, 210, 527, 971
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	370, 385, 829
ApeKI	GCWGC	4 cut(s)	432, 629, 850, 853
ApoI	RAATTY	2 cut(s)	667, 893
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	32, 83, 797
AsuII	TTCGAA	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	165, 842
Bbv12I	GWGCWC	3 cut(s)	165, 730, 842
BbvI	GCAGC	4 cut(s)	444, 641, 862, 865
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	608
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	627
BglII	AGATCT	1 cut(s)	907
BisI	GCNGC	5 cut(s)	231, 433, 630, 851, 854
BlsI	GCNGC	5 cut(s)	232, 434, 631, 852, 855
Bme1390I	CCNGG	2 cut(s)	78, 608
BmeRI	GACNNNNNGTC	1 cut(s)	564
BmrFI	CCNGG	2 cut(s)	78, 608
BmsI	GCATC	4 cut(s)	297, 441, 823, 877
BpmI	CTGGAG	2 cut(s)	463, 714
Bpu14I	TTCGAA	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	608
BsaBI	GATNNNNATC	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	197, 358, 412, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	5 cut(s)	43, 337, 480, 808, 832
Bse8I	GATNNNNATC	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	4 cut(s)	197, 358, 412, 606
BseGI	GGATG	6 cut(s)	40, 453, 640, 814, 868, 946
BseJI	GATNNNNATC	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseNI	ACTGG	5 cut(s)	43, 337, 480, 808, 832
BseRI	GAGGAG	2 cut(s)	378, 761
BseXI	GCAGC	4 cut(s)	444, 641, 862, 865
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	372, 387, 831
BsiHKAI	GWGCWC	3 cut(s)	165, 730, 842
BsiSI	CCGG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	612
BsnI	GGCC	3 cut(s)	372, 387, 831
Bsp119I	TTCGAA	1 cut(s)	485
Bsp1286I	GDGCHC	3 cut(s)	165, 730, 842
BspACI	CCGC	3 cut(s)	231, 654, 818
BspANI	GGCC	3 cut(s)	372, 387, 831
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	4 cut(s)	188, 210, 527, 971
BspT104I	TTCGAA	1 cut(s)	485
BsrI	ACTGG	5 cut(s)	43, 337, 480, 808, 832
BssECI	CCNNGG	4 cut(s)	197, 358, 412, 606
BssNAI	GTATAC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	413, 564
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	424, 822, 858, 969
BstDEI	CTNAG	3 cut(s)	157, 516, 947
BstDSI	CCRYGG	2 cut(s)	358, 412
BstF5I	GGATG	6 cut(s)	40, 453, 640, 814, 868, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 378, 432, 837
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	824, 850
BstSCI	CCNGG	2 cut(s)	76, 606
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	444, 641, 862, 865
BstX2I	RGATCY	2 cut(s)	202, 907
BstYI	RGATCY	2 cut(s)	202, 907
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	372, 387, 831
BtgI	CCRYGG	2 cut(s)	358, 412
BtsCI	GGATG	6 cut(s)	40, 453, 640, 814, 868, 946
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	4 cut(s)	424, 822, 858, 969
CaiI	CAGNNNCTG	1 cut(s)	314
Csp6I	GTAC	5 cut(s)	250, 277, 601, 874, 959
CviAII	CATG	6 cut(s)	191, 374, 455, 821, 847, 877
CviQI	GTAC	5 cut(s)	250, 277, 601, 874, 959
DdeI	CTNAG	3 cut(s)	157, 516, 947
DriI	GACNNNNNGTC	1 cut(s)	564
Eam1105I	GACNNNNNGTC	1 cut(s)	564
Ecl136II	GAGCTC	2 cut(s)	163, 840
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	165, 842
Eco32I	GATATC	2 cut(s)	181, 620
Eco53kI	GAGCTC	2 cut(s)	163, 840
EcoICRI	GAGCTC	2 cut(s)	163, 840
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	2 cut(s)	181, 620
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	165, 842
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	6 cut(s)	194, 377, 458, 824, 850, 880
FatI	CATG	6 cut(s)	190, 373, 454, 820, 846, 876
FbaI	TGATCA	1 cut(s)	37
FblI	GTMKAC	2 cut(s)	47, 114
Fnu4HI	GCNGC	5 cut(s)	231, 433, 630, 851, 854
FokI	GGATG	6 cut(s)	47, 460, 627, 801, 855, 953
FriOI	GRGCYC	2 cut(s)	165, 842
Fsp4HI	GCNGC	5 cut(s)	231, 433, 630, 851, 854
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	5 cut(s)	231, 433, 630, 851, 854
GsuI	CTGGAG	2 cut(s)	463, 714
HaeIII	GGCC	3 cut(s)	372, 387, 831
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	6 cut(s)	194, 377, 458, 824, 850, 880
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	136, 336
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	3 cut(s)	32, 83, 797
Hpy166II	GTNNAC	4 cut(s)	48, 115, 406, 603
Hpy188I	TCNGA	5 cut(s)	132, 141, 293, 570, 981
Hpy188III	TCNNGA	6 cut(s)	315, 577, 695, 731, 905, 911
Hpy8I	GTNNAC	4 cut(s)	48, 115, 406, 603
Hpy99I	CGWCG	2 cut(s)	132, 985
HpyAV	CCTTC	3 cut(s)	319, 362, 476
HpyCH4III	ACNGT	2 cut(s)	413, 564
HpyCH4IV	ACGT	3 cut(s)	585, 637, 884
HpyCH4V	TGCA	9 cut(s)	224, 261, 381, 422, 454, 629, 814, 824, 850
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 378, 432, 837
HpyF3I	CTNAG	3 cut(s)	157, 516, 947
HpySE526I	ACGT	3 cut(s)	585, 637, 884
Hsp92II	CATG	6 cut(s)	194, 377, 458, 824, 850, 880
Ksp22I	TGATCA	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	733, 845
Lsp1109I	GCAGC	4 cut(s)	444, 641, 862, 865
LweI	GCATC	4 cut(s)	297, 441, 823, 877
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	3 cut(s)	585, 637, 884
MaeIII	GTNAC	2 cut(s)	304, 673
MboII	GAAGA	8 cut(s)	71, 116, 116, 145, 154, 197, 247, 763
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	2 cut(s)	202, 907
MhlI	GDGCHC	3 cut(s)	165, 730, 842
MluCI	AATT	5 cut(s)	174, 667, 792, 893, 934
MmeI	TCCRAC	5 cut(s)	94, 110, 548, 668, 867
MnlI	CCTC	6 cut(s)	260, 356, 487, 546, 739, 907
Mph1103I	ATGCAT	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	1 cut(s)	795
MslI	CAYNNNNRTG	1 cut(s)	819
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	78, 608
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	230, 378, 432, 837
NciI	CCSGG	1 cut(s)	608
NlaIII	CATG	6 cut(s)	194, 377, 458, 824, 850, 880
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	824, 850
NspV	TTCGAA	1 cut(s)	485
PaeI	GCATGC	1 cut(s)	824
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	136, 336
PkrI	GCNGC	5 cut(s)	232, 434, 631, 852, 855
PshBI	ATTAAT	1 cut(s)	795
Psp124BI	GAGCTC	2 cut(s)	165, 842
Psp1406I	AACGTT	2 cut(s)	585, 884
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	202, 907
RsaI	GTAC	5 cut(s)	251, 278, 602, 875, 960
RsaNI	GTAC	5 cut(s)	250, 277, 601, 874, 959
RseI	CAYNNNNRTG	1 cut(s)	819
SacI	GAGCTC	2 cut(s)	165, 842
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	5 cut(s)	231, 433, 630, 851, 854
ScrFI	CCNGG	2 cut(s)	78, 608
SduI	GDGCHC	3 cut(s)	165, 730, 842
SfaNI	GCATC	4 cut(s)	297, 441, 823, 877
SfcI	CTRYAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	5 cut(s)	174, 667, 792, 893, 934
SsiI	CCGC	3 cut(s)	231, 654, 818
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	2 cut(s)	165, 842
StyD4I	CCNGG	2 cut(s)	76, 606
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	413, 564
TaiI	ACGT	3 cut(s)	588, 640, 887
TaqI	TCGA	3 cut(s)	339, 485, 696
TasI	AATT	5 cut(s)	174, 667, 792, 893, 934
TatI	WGTACW	2 cut(s)	276, 600
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	136, 336
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	4 cut(s)	432, 629, 850, 853
TspDTI	ATGAA	6 cut(s)	72, 117, 504, 539, 579, 945
TspGWI	ACGGA	3 cut(s)	375, 662, 861
TspRI	CASTG	1 cut(s)	567
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	2 cut(s)	667, 893
XceI	RCATGY	2 cut(s)	824, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	47, 114
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.