Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Reverse (-)

23216059 .. 23218554

Gene Structure 2496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGATCGATCCTTGGATCGATCTTCCAAAAACCGCAGGAGATAAGGAATGGTACTTCTTCTGCAAAAGAGGGAGAAAGTACAAGAACAGCATCAGACCCAACAGAGTAACAGGTTCTGGATTTTGGAAGGCAACTGGAATCGACAAGCCGATACATTCCCACGGAGGAGAGAGCCATGCCTGCAGTGGCCTAAAGAAAACATTGGTTTACTACCGTGGAAGTGCAGGCAAAGGCAGCAAAACCGATTGGATGATGCACGAGTTTCGCCTTCCTAATTCCTCCAGTTCGAATGAACACAATAACCGAAGCTCTAACCCTAAGAATATGAATACTGATCCTCAACAAGAAGCTGAAATATGGACATTGTGTCGGATATTCAAAAGAAATGTTTCATACAGAAAGTACACCCCAGATTGGAGAGATCTATCTGCAGATAAACGTCATCCAACGGACACCGTAAACTCCAAGAAATTCGTTACTGATCGACAAGACCTTCTCGACCAATCTAACACTTATATCAGTTTCGGTGCTTCAGACAGTTGCTACGAGGGGAAGCCTCTTGTGAATCATACCAACAATATAAACAGTATTATTAATGGAAGTCACCAATTGCATGCGCATGCAGTAGGGCAGTTGAGCTCCAACATGCAGCAGCCTAATTCAACACATCCATATATGGACACGTTCTCAAACATTTCGTTTCAAGATCTTGAGAATGATCTTTTGAATGAAAATTGGGATGAGCTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

252

Amino Acids

28.8

Weight (kDa)

8.57

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	4 - 91	1.6e-24	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	621
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	3 cut(s)	5, 26, 332
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	3 cut(s)	56, 83, 407
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	382, 666, 707, 730
AhdI	GACNNNNNGTC	1 cut(s)	369
AluBI	AGCT	4 cut(s)	312, 353, 642, 748
AluI	AGCT	4 cut(s)	312, 353, 642, 748
Alw21I	GWGCWC	1 cut(s)	644
AlwI	GGATC	3 cut(s)	5, 26, 332
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	237, 652, 655
ApoI	RAATTY	1 cut(s)	473
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	599
AsuII	TTCGAA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	644
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	3 cut(s)	249, 664, 667
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BfmI	CTRYAG	2 cut(s)	184, 432
BglII	AGATCT	2 cut(s)	424, 709
BisI	GCNGC	3 cut(s)	238, 653, 656
BlsI	GCNGC	3 cut(s)	239, 654, 657
BmeRI	GACNNNNNGTC	1 cut(s)	369
BmsI	GCATC	2 cut(s)	102, 246
BpmI	CTGGAG	1 cut(s)	268
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	734
Bsa29I	ATCGAT	2 cut(s)	9, 21
BsaJI	CCNNGG	3 cut(s)	14, 163, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	142, 285
BseCI	ATCGAT	2 cut(s)	9, 21
BseDI	CCNNGG	3 cut(s)	14, 163, 217
BseGI	GGATG	4 cut(s)	258, 445, 670, 748
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	142, 285
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	249, 664, 667
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	192
BshVI	ATCGAT	2 cut(s)	9, 21
BsiHKAI	GWGCWC	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	417
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	192
BspDI	ATCGAT	2 cut(s)	9, 21
BspMAI	CTGCAG	2 cut(s)	188, 436
BspPI	GGATC	3 cut(s)	5, 26, 332
BspT104I	TTCGAA	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	142, 285
BssECI	CCNNGG	3 cut(s)	14, 163, 217
BssMI	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	218, 460, 542, 590
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	184, 229, 618, 624
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	163, 217
BstF5I	GGATG	4 cut(s)	258, 445, 670, 748
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	9 cut(s)	9, 13, 21, 25, 340, 427, 487, 712, 724
BstMBI	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 237
BstNSI	RCATGY	3 cut(s)	620, 626, 652
BstSFI	CTRYAG	2 cut(s)	184, 432
BstV1I	GCAGC	3 cut(s)	249, 664, 667
BstX2I	RGATCY	2 cut(s)	424, 709
BstYI	RGATCY	2 cut(s)	424, 709
Bsu15I	ATCGAT	2 cut(s)	9, 21
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	2 cut(s)	9, 21
BtgI	CCRYGG	2 cut(s)	163, 217
BtsCI	GGATG	4 cut(s)	258, 445, 670, 748
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	4 cut(s)	184, 229, 618, 624
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	622
ClaI	ATCGAT	2 cut(s)	9, 21
Csp6I	GTAC	3 cut(s)	55, 82, 406
CviAII	CATG	4 cut(s)	179, 617, 623, 649
CviJI	RGCY	9 cut(s)	151, 177, 192, 312, 353, 559, 642, 658, 748
CviKI_1	RGCY	9 cut(s)	151, 177, 192, 312, 353, 559, 642, 658, 748
CviQI	GTAC	3 cut(s)	55, 82, 406
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	9 cut(s)	8, 12, 20, 24, 339, 426, 486, 711, 723
DpnII	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
DriI	GACNNNNNGTC	1 cut(s)	369
Eam1105I	GACNNNNNGTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	4 cut(s)	182, 620, 626, 652
FatI	CATG	4 cut(s)	178, 616, 622, 648
Fnu4HI	GCNGC	3 cut(s)	238, 653, 656
FokI	GGATG	3 cut(s)	265, 432, 657
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	238, 653, 656
FspAI	RTGCGCAY	1 cut(s)	621
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	3 cut(s)	238, 653, 656
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	4 cut(s)	182, 620, 626, 652
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	2 cut(s)	141, 568
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	3 cut(s)	211, 408, 463
Hpy188I	TCNGA	3 cut(s)	98, 375, 538
Hpy188III	TCNNGA	4 cut(s)	120, 500, 707, 713
Hpy8I	GTNNAC	3 cut(s)	211, 408, 463
HpyAV	CCTTC	3 cut(s)	124, 281, 506
HpyCH4III	ACNGT	4 cut(s)	218, 460, 542, 590
HpyCH4IV	ACGT	2 cut(s)	442, 686
HpyCH4V	TGCA	8 cut(s)	66, 186, 227, 259, 434, 616, 626, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 237
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	442, 686
Hsp92II	CATG	4 cut(s)	182, 620, 626, 652
HspAI	GCGC	1 cut(s)	620
Kzo9I	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
LmnI	GCTCC	1 cut(s)	647
LpnPI	CCDG	8 cut(s)	24, 99, 105, 123, 196, 213, 298, 426
Lsp1109I	GCAGC	3 cut(s)	249, 664, 667
LweI	GCATC	2 cut(s)	102, 246
MaeII	ACGT	2 cut(s)	442, 686
MaeIII	GTNAC	3 cut(s)	109, 478, 605
MalI	GATC	9 cut(s)	8, 12, 20, 24, 339, 426, 486, 711, 723
MboI	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
MboII	GAAGA	2 cut(s)	17, 52
MfeI	CAATTG	1 cut(s)	611
MflI	RGATCY	2 cut(s)	424, 709
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	5 cut(s)	277, 473, 611, 661, 736
MmeI	TCCRAC	3 cut(s)	353, 473, 669
MnlI	CCTC	6 cut(s)	65, 161, 292, 351, 544, 570
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	621
MunI	CAATTG	1 cut(s)	611
MwoI	GCNNNNNNNGC	2 cut(s)	183, 237
NdeII	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
NlaIII	CATG	4 cut(s)	182, 620, 626, 652
NmuCI	GTSAC	1 cut(s)	605
NsbI	TGCGCA	1 cut(s)	621
NspI	RCATGY	3 cut(s)	620, 626, 652
NspV	TTCGAA	1 cut(s)	290
PaeI	GCATGC	2 cut(s)	620, 626
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	141, 568
PkrI	GCNGC	3 cut(s)	239, 654, 657
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	644
PstI	CTGCAG	2 cut(s)	188, 436
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	424, 709
RsaI	GTAC	3 cut(s)	56, 83, 407
RsaNI	GTAC	3 cut(s)	55, 82, 406
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	3 cut(s)	238, 653, 656
Sau3AI	GATC	9 cut(s)	6, 10, 18, 22, 337, 424, 484, 709, 721
SduI	GDGCHC	1 cut(s)	644
SetI	ASST	8 cut(s)	118, 314, 355, 445, 498, 644, 689, 750
SfaNI	GCATC	2 cut(s)	102, 246
SfcI	CTRYAG	2 cut(s)	184, 432
SfuI	TTCGAA	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SphI	GCATGC	2 cut(s)	620, 626
Sse9I	AATT	5 cut(s)	277, 473, 611, 661, 736
SsiI	CCGC	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	4 cut(s)	218, 460, 542, 590
TaiI	ACGT	2 cut(s)	445, 689
TaqI	TCGA	6 cut(s)	9, 21, 144, 290, 487, 501
TasI	AATT	5 cut(s)	277, 473, 611, 661, 736
TatI	WGTACW	2 cut(s)	81, 405
TfiI	GAWTC	2 cut(s)	141, 568
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	3 cut(s)	237, 652, 655
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	309, 344, 384, 747
TspGWI	ACGGA	2 cut(s)	180, 467
TspRI	CASTG	1 cut(s)	193
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	3 cut(s)	620, 626, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.