Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Reverse (-)

28049433 .. 28051375

Gene Structure 1943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1130200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGATGGATAGCACATATTATAGTCCTAGCGATAAGGATGATCACCAGTATACTGATGATGAAGATGATGTCCAACTACCAGGATTTCGGTTTCACCCAACAGATGAAGAACTTGTAGACTTCTATCTTCGTCGGAAGATTCAGAAGAAGCCGATAAGCTTAGAGCTCATCAAATCAATTGATATCTACAAGCATGATCCTTGGGATCTTCCAAAAGCCGCAGGAGATAAGGAATGGTACTTCTTCTGCAAAAGAGGGAGAAAGTACAAGAACAGCATCAGACCCAACAGAGTAACAGGCTCTGGATTTTGGAAGGCAACTGGAATCGACAAGCCAATACATTCCCACAGAGGAGAAGGCCATGACTGCATTGGCCTAAAGAAAACATTGGTTTACTACCGTGGAAGTGCAGGCAAAGGCAGCAAAACCGATTGGATGATGCACGAGTTTCGCCTTCCTAATCCTTCCAGTTTGAATGAATACAAGAACCGAAGCTCTAACACTAAGAATATGAATACTGATCCTCAACAAGAAGCTGAAATATGGACACTGTGTCGGATATTCAAGAGAAATGTTTCCTACAAAAAGTACACCCCAGATTGGAGATATCTATCTGCAGCTAAACGTCATCCAACGGACACCGTAAACTCCAAAAGTTTCACTACCGATCAAAAAGATCATCTCGATCAATCTAACACTTACATCAGCTTCGGTGCTTCAGACATTTGCTACGAGGAGAAGAAGCCTGTTGTGAATCATACCAACAATACTAACAACATTATTGATGGAAGTCACCAGTTGCATCCGCATGCAGTAGGCCAGTTGAGCTCCAACATGCAGCAGCCTGCTTCAACGCATCCGTACATGGAAACGTTCTCAAATTTTTCGTTTCAAGATCTTGAGGACGATCTTTTGAATGAAAATTGGGATGAGCTTAGATCAGTCGTACAACAGCTTGCTTTTGATCCGACGGCGTTTCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

330

Amino Acids

38.36

Weight (kDa)

6.39

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	28 - 153	1.5e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	53, 120
AciI	CCGC	2 cut(s)	222, 809
AclI	AACGTT	1 cut(s)	875
AclWI	GGATC	4 cut(s)	194, 216, 518, 962
AcsI	RAATTY	1 cut(s)	883
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	5 cut(s)	242, 269, 593, 866, 951
AfiI	CCNNNNNNNGG	1 cut(s)	603
AgsI	TTSAA	5 cut(s)	478, 568, 855, 896, 919
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	9 cut(s)	162, 169, 498, 539, 623, 711, 831, 937, 958
AluI	AGCT	9 cut(s)	162, 169, 498, 539, 623, 711, 831, 937, 958
Alw21I	GWGCWC	2 cut(s)	171, 833
AlwI	GGATC	4 cut(s)	194, 216, 518, 962
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	361, 376, 820
ApeKI	GCWGC	4 cut(s)	423, 620, 841, 844
ApoI	RAATTY	1 cut(s)	883
Asp700I	GAANNNNTTC	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	38, 89, 788
BanII	GRGCYC	2 cut(s)	171, 833
BauI	CACGAG	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	171, 833
BbvI	GCAGC	4 cut(s)	435, 632, 853, 856
BccI	CCATC	1 cut(s)	782
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	618
BglII	AGATCT	1 cut(s)	898
BisI	GCNGC	5 cut(s)	222, 424, 621, 842, 845
BlsI	GCNGC	5 cut(s)	223, 425, 622, 843, 846
Bme1390I	CCNGG	1 cut(s)	84
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	4 cut(s)	288, 432, 814, 868
BpuEI	CTTGAG	1 cut(s)	923
BsaBI	GATNNNNATC	1 cut(s)	613
BsaJI	CCNNGG	2 cut(s)	203, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse1I	ACTGG	5 cut(s)	49, 328, 471, 799, 823
Bse8I	GATNNNNATC	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	203, 403
BseGI	GGATG	6 cut(s)	46, 444, 631, 805, 859, 937
BseJI	GATNNNNATC	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseNI	ACTGG	5 cut(s)	49, 328, 471, 799, 823
BseRI	GAGGAG	2 cut(s)	369, 752
BseXI	GCAGC	4 cut(s)	435, 632, 853, 856
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	363, 378, 822
BsiHKAI	GWGCWC	2 cut(s)	171, 833
BslI	CCNNNNNNNGG	1 cut(s)	603
BsnI	GGCC	3 cut(s)	363, 378, 822
Bsp1286I	GDGCHC	2 cut(s)	171, 833
BspACI	CCGC	2 cut(s)	222, 809
BspANI	GGCC	3 cut(s)	363, 378, 822
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	4 cut(s)	194, 216, 518, 962
BsrI	ACTGG	5 cut(s)	49, 328, 471, 799, 823
BssECI	CCNNGG	2 cut(s)	203, 403
BssNAI	GTATAC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	404, 555, 646
BstC8I	GCNNGC	4 cut(s)	415, 813, 849, 960
BstDEI	CTNAG	3 cut(s)	163, 507, 938
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	6 cut(s)	46, 444, 631, 805, 859, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	369, 423, 828
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	815, 841
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	4 cut(s)	435, 632, 853, 856
BstX2I	RGATCY	2 cut(s)	208, 898
BstYI	RGATCY	2 cut(s)	208, 898
BstZ17I	GTATAC	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	363, 378, 822
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	6 cut(s)	46, 444, 631, 805, 859, 937
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	4 cut(s)	415, 813, 849, 960
CaiI	CAGNNNCTG	1 cut(s)	305
Csp6I	GTAC	5 cut(s)	241, 268, 592, 865, 950
CviAII	CATG	5 cut(s)	197, 365, 812, 838, 868
CviQI	GTAC	5 cut(s)	241, 268, 592, 865, 950
DdeI	CTNAG	3 cut(s)	163, 507, 938
DriI	GACNNNNNGTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	555
Ecl136II	GAGCTC	2 cut(s)	169, 831
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	2 cut(s)	171, 833
Eco32I	GATATC	2 cut(s)	187, 611
Eco53kI	GAGCTC	2 cut(s)	169, 831
Eco57I	CTGAAG	1 cut(s)	705
EcoICRI	GAGCTC	2 cut(s)	169, 831
EcoRII	CCWGG	1 cut(s)	82
EcoRV	GATATC	2 cut(s)	187, 611
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	2 cut(s)	171, 833
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	5 cut(s)	200, 368, 815, 841, 871
FatI	CATG	5 cut(s)	196, 364, 811, 837, 867
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	2 cut(s)	53, 120
Fnu4HI	GCNGC	5 cut(s)	222, 424, 621, 842, 845
FokI	GGATG	6 cut(s)	53, 451, 618, 792, 846, 944
FriOI	GRGCYC	2 cut(s)	171, 833
Fsp4HI	GCNGC	5 cut(s)	222, 424, 621, 842, 845
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	5 cut(s)	222, 424, 621, 842, 845
HaeIII	GGCC	3 cut(s)	363, 378, 822
Hin1II	CATG	5 cut(s)	200, 368, 815, 841, 871
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	142, 327, 757
HphI	GGTGA	3 cut(s)	38, 89, 788
Hpy166II	GTNNAC	5 cut(s)	54, 121, 397, 594, 649
Hpy188I	TCNGA	6 cut(s)	138, 147, 284, 561, 724, 972
Hpy188III	TCNNGA	5 cut(s)	306, 568, 686, 896, 902
Hpy8I	GTNNAC	5 cut(s)	54, 121, 397, 594, 649
Hpy99I	CGWCG	2 cut(s)	138, 976
HpyAV	CCTTC	4 cut(s)	310, 353, 467, 477
HpyCH4III	ACNGT	3 cut(s)	404, 555, 646
HpyCH4IV	ACGT	2 cut(s)	628, 875
HpyCH4V	TGCA	8 cut(s)	252, 372, 413, 445, 620, 805, 815, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	369, 423, 828
HpyF3I	CTNAG	3 cut(s)	163, 507, 938
HpySE526I	ACGT	2 cut(s)	628, 875
Hsp92II	CATG	5 cut(s)	200, 368, 815, 841, 871
Ksp22I	TGATCA	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	4 cut(s)	435, 632, 853, 856
LweI	GCATC	4 cut(s)	288, 432, 814, 868
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	2 cut(s)	628, 875
MaeIII	GTNAC	2 cut(s)	295, 794
MboII	GAAGA	8 cut(s)	77, 122, 122, 151, 160, 203, 238, 754
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	208, 898
MhlI	GDGCHC	2 cut(s)	171, 833
MluCI	AATT	3 cut(s)	180, 883, 925
MmeI	TCCRAC	5 cut(s)	100, 116, 539, 659, 858
MnlI	CCTC	5 cut(s)	251, 347, 537, 730, 898
MroXI	GAANNNNTTC	1 cut(s)	577
MslI	CAYNNNNRTG	1 cut(s)	810
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	369, 423, 828
NlaIII	CATG	5 cut(s)	200, 368, 815, 841, 871
NmuCI	GTSAC	1 cut(s)	794
NspI	RCATGY	2 cut(s)	815, 841
PaeI	GCATGC	1 cut(s)	815
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	3 cut(s)	142, 327, 757
PkrI	GCNGC	5 cut(s)	223, 425, 622, 843, 846
Psp124BI	GAGCTC	2 cut(s)	171, 833
Psp1406I	AACGTT	1 cut(s)	875
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	208, 898
RsaI	GTAC	5 cut(s)	242, 269, 593, 866, 951
RsaNI	GTAC	5 cut(s)	241, 268, 592, 865, 950
RseI	CAYNNNNRTG	1 cut(s)	810
SacI	GAGCTC	2 cut(s)	171, 833
SatI	GCNGC	5 cut(s)	222, 424, 621, 842, 845
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	171, 833
SfaNI	GCATC	4 cut(s)	288, 432, 814, 868
SfcI	CTRYAG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	3 cut(s)	180, 883, 925
SsiI	CCGC	2 cut(s)	222, 809
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	2 cut(s)	171, 833
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	3 cut(s)	404, 555, 646
TaiI	ACGT	2 cut(s)	631, 878
TaqI	TCGA	2 cut(s)	330, 687
TasI	AATT	3 cut(s)	180, 883, 925
TatI	WGTACW	2 cut(s)	267, 591
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	142, 327, 757
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	4 cut(s)	423, 620, 841, 844
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	5 cut(s)	78, 123, 495, 530, 936
TspGWI	ACGGA	2 cut(s)	653, 852
TspRI	CASTG	1 cut(s)	558
XapI	RAATTY	1 cut(s)	883
XceI	RCATGY	2 cut(s)	815, 841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	53, 120
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.