Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Forward (+)

20267689 .. 20269941

Gene Structure 2253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATGGAAAAAATACTAGTTGCAAGGATGATCATCATGATCATCAGGATCATGATGATGAGGATGTTCCACTTCCGGGATTTAGGTTTCACCCAACAGATGAAGAACTAGTTGGGTTCTATCTCCGCCGGAAGATTCAGAAGAAAGCCATCAGCTTAGAGCTCATCAAATCAATTGATATCTACAAGCATGATCCTTGGGATCTTCCAACTACAACTACTGCAGGAGACAAAGAGTGGTACTTCTTCTGCAGAAGAGGGAGAAAGTACAAGAACAGTATCAGACCTAATAGAGTAACCGGGTCTGGGTTTTGGAAAGCAACTGGGATAGACAAGCCAGTTCATGATTCATACAGTAACTGCATTGGGCTGAAGAAAACTCTGGTTTACTACCGCGGAAGTGCCGGAAAAGGCACCAAAACTGATTGGATGATGCACGAATTTCGCCGTCCATCCACCAATGACAACAACAATGTTCACACTAACCACACCTCCTGCACTGCTATATCACACACTGATCCTCAAGAAGCTGAAATTTGGACATTGTGTCGGATATTCAAGAGATCTGTGTCACATAGAAAGTATACACCAGACTGGAGAGAATTGTCTGCTAAACAATCCAGCTCTAAGAAATGCAATACGACTGATCAAGATCGTCATCAAGAGCCCACAAACATCAATCGAGAATCTTATATCAATTTTGGTGCTTCAACCATTTGCTACGAAGAGAAGAAGCCCAATGTTGTGAACCATACTAATTATAACAACGGAAGCAACAGTAACCAGACATTGCAGAATGTAGGTCAGTTCAGCTCCGGAATGACTACTGCTACGCATCCATGCAACATGGATTCGTTCACATCGAGCTATTCATATGCAGATATTGAGAATCATGACTTTTTTAACGACAACTGGGAAGAGTTCAAATCAGTTGTACAGCTTGCTCTTGACCCATCGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

321

Amino Acids

37.12

Weight (kDa)

6.96

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	26 - 149	2.3e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	584
AccII	CGCG	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	815
AciI	CCGC	3 cut(s)	127, 394, 396
AclWI	GGATC	4 cut(s)	57, 188, 210, 512
AcsI	RAATTY	2 cut(s)	440, 534
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	242, 269, 936
AfiI	CCNNNNNNNGG	2 cut(s)	77, 306
AgsI	TTSAA	3 cut(s)	559, 711, 925
AhdI	GACNNNNNGTC	1 cut(s)	546
AhlI	ACTAGT	2 cut(s)	17, 109
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	7 cut(s)	156, 163, 530, 624, 813, 867, 940
AluI	AGCT	7 cut(s)	156, 163, 530, 624, 813, 867, 940
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	4 cut(s)	57, 188, 210, 512
AlwNI	CAGNNNCTG	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	815
ApoI	RAATTY	2 cut(s)	440, 534
ArsI	GACNNNNNNTTYG	1 cut(s)	941
AsuC2I	CCSGG	2 cut(s)	78, 301
AsuHPI	GGTGA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	165, 669
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	3 cut(s)	158, 460, 961
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BclI	TGATCA	3 cut(s)	31, 40, 646
BcnI	CCSGG	2 cut(s)	78, 301
BcoDI	GTCTC	1 cut(s)	222
BcuI	ACTAGT	2 cut(s)	17, 109
BfaI	CTAG	2 cut(s)	18, 110
BfmI	CTRYAG	2 cut(s)	222, 250
BglII	AGATCT	1 cut(s)	563
Bme1390I	CCNGG	2 cut(s)	78, 301
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	78, 301
BmrI	ACTGGG	2 cut(s)	333, 922
BmsI	GCATC	2 cut(s)	423, 844
BmuI	ACTGGG	2 cut(s)	333, 922
BpmI	CTGGAG	1 cut(s)	616
BpuEI	CTTGAG	1 cut(s)	507
BpuMI	CCSGG	2 cut(s)	78, 301
BsaBI	GATNNNNATC	3 cut(s)	33, 651, 657
BsaJI	CCNNGG	2 cut(s)	197, 394
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 306
Bse1I	ACTGG	4 cut(s)	328, 338, 599, 917
Bse3DI	GCAATG	1 cut(s)	788
Bse8I	GATNNNNATC	3 cut(s)	33, 651, 657
BseAI	TCCGGA	1 cut(s)	815
BseDI	CCNNGG	2 cut(s)	197, 394
BseGI	GGATG	6 cut(s)	10, 34, 70, 435, 452, 835
BseJI	GATNNNNATC	3 cut(s)	33, 651, 657
BseLI	CCNNNNNNNGG	2 cut(s)	77, 306
BseMI	GCAATG	1 cut(s)	788
BseNI	ACTGG	4 cut(s)	328, 338, 599, 917
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	77, 130, 300, 405, 816
BslI	CCNNNNNNNGG	2 cut(s)	77, 306
BsmAI	GTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	165, 669
Bsp13I	TCCGGA	1 cut(s)	815
Bsp1407I	TGTACA	1 cut(s)	934
Bsp143I	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
BspACI	CCGC	3 cut(s)	127, 394, 396
BspEI	TCCGGA	1 cut(s)	815
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	4 cut(s)	37, 52, 343, 892
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	2 cut(s)	226, 254
BspPI	GGATC	4 cut(s)	57, 188, 210, 512
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	788
BsrGI	TGTACA	1 cut(s)	934
BsrI	ACTGG	4 cut(s)	328, 338, 599, 917
BssECI	CCNNGG	2 cut(s)	197, 394
BssMI	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
BssNAI	GTATAC	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	278, 356, 779
Bst6I	CTCTTC	3 cut(s)	250, 720, 912
BstAUI	TGTACA	1 cut(s)	934
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	2 cut(s)	157, 627
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	6 cut(s)	10, 34, 70, 435, 452, 835
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	9 cut(s)	34, 43, 52, 196, 205, 520, 566, 649, 655
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
BstSCI	CCNGG	2 cut(s)	76, 299
BstSFI	CTRYAG	2 cut(s)	222, 250
BstUI	CGCG	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	202, 563
BstYI	RGATCY	2 cut(s)	202, 563
BstZ17I	GTATAC	1 cut(s)	585
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	6 cut(s)	10, 34, 70, 435, 452, 835
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	498, 513
Cac8I	GCNNGC	1 cut(s)	942
CaiI	CAGNNNCTG	1 cut(s)	360
CciI	TCATGA	4 cut(s)	37, 52, 343, 892
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	241, 268, 935
CviAII	CATG	7 cut(s)	38, 53, 191, 344, 840, 847, 893
CviQI	GTAC	3 cut(s)	241, 268, 935
DdeI	CTNAG	2 cut(s)	157, 627
DpnI	GATC	9 cut(s)	33, 42, 51, 195, 204, 519, 565, 648, 654
DpnII	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
DriI	GACNNNNNGTC	1 cut(s)	546
Eam1104I	CTCTTC	3 cut(s)	250, 720, 912
Eam1105I	GACNNNNNGTC	1 cut(s)	546
EarI	CTCTTC	3 cut(s)	250, 720, 912
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	165, 669
Eco32I	GATATC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	165, 669
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	7 cut(s)	41, 56, 194, 347, 843, 850, 896
FatI	CATG	7 cut(s)	37, 52, 190, 343, 839, 846, 892
FauNDI	CATATG	1 cut(s)	874
FbaI	TGATCA	3 cut(s)	31, 40, 646
FblI	GTMKAC	1 cut(s)	584
FokI	GGATG	6 cut(s)	17, 41, 77, 439, 442, 822
FriOI	GRGCYC	2 cut(s)	165, 669
FspBI	CTAG	2 cut(s)	18, 110
GsuI	CTGGAG	1 cut(s)	616
HapII	CCGG	5 cut(s)	77, 130, 300, 405, 816
Hin1II	CATG	7 cut(s)	41, 56, 194, 347, 843, 850, 896
HinfI	GANTC	5 cut(s)	136, 347, 686, 851, 889
HpaII	CCGG	5 cut(s)	77, 130, 300, 405, 816
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	5 cut(s)	388, 478, 585, 748, 858
Hpy188I	TCNGA	3 cut(s)	141, 284, 552
Hpy8I	GTNNAC	5 cut(s)	388, 478, 585, 748, 858
HpyCH4III	ACNGT	3 cut(s)	278, 356, 779
HpyF3I	CTNAG	2 cut(s)	157, 627
Hsp92II	CATG	7 cut(s)	41, 56, 194, 347, 843, 850, 896
Kpn2I	TCCGGA	1 cut(s)	815
Ksp22I	TGATCA	3 cut(s)	31, 40, 646
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
LmnI	GCTCC	1 cut(s)	818
LweI	GCATC	2 cut(s)	423, 844
MaeI	CTAG	2 cut(s)	18, 110
MaeIII	GTNAC	4 cut(s)	295, 356, 570, 779
MalI	GATC	9 cut(s)	33, 42, 51, 195, 204, 519, 565, 648, 654
MboI	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	2 cut(s)	202, 563
MhlI	GDGCHC	2 cut(s)	165, 669
MluCI	AATT	6 cut(s)	174, 440, 534, 602, 697, 757
MmeI	TCCRAC	2 cut(s)	233, 530
MnlI	CCTC	4 cut(s)	55, 251, 502, 531
MroI	TCCGGA	1 cut(s)	815
MseI	TTAA	1 cut(s)	903
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	5 cut(s)	77, 130, 300, 405, 816
MspR9I	CCNGG	2 cut(s)	78, 301
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	396
NciI	CCSGG	2 cut(s)	78, 301
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
NlaIII	CATG	7 cut(s)	41, 56, 194, 347, 843, 850, 896
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	570
PagI	TCATGA	4 cut(s)	37, 52, 343, 892
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PfeI	GAWTC	5 cut(s)	136, 347, 686, 851, 889
PfoI	TCCNGGA	1 cut(s)	76
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	415
PstI	CTGCAG	2 cut(s)	226, 254
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	202, 563
RsaI	GTAC	3 cut(s)	242, 269, 936
RsaNI	GTAC	3 cut(s)	241, 268, 935
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	903
Sau3AI	GATC	9 cut(s)	31, 40, 49, 193, 202, 517, 563, 646, 652
ScrFI	CCNGG	2 cut(s)	78, 301
SduI	GDGCHC	2 cut(s)	165, 669
SfaNI	GCATC	2 cut(s)	423, 844
SfcI	CTRYAG	2 cut(s)	222, 250
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
SpeI	ACTAGT	2 cut(s)	17, 109
Sse9I	AATT	6 cut(s)	174, 440, 534, 602, 697, 757
SsiI	CCGC	3 cut(s)	127, 394, 396
SspMI	CTAG	2 cut(s)	18, 110
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	76, 299
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	278, 356, 779
TaqI	TCGA	2 cut(s)	682, 863
TasI	AATT	6 cut(s)	174, 440, 534, 602, 697, 757
TatI	WGTACW	2 cut(s)	267, 934
TfiI	GAWTC	5 cut(s)	136, 347, 686, 851, 889
Tru1I	TTAA	1 cut(s)	903
Tru9I	TTAA	1 cut(s)	903
TscAI	CASTG	2 cut(s)	505, 520
TseFI	GTSAC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	4 cut(s)	117, 332, 339, 861
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	2 cut(s)	505, 520
XapI	RAATTY	2 cut(s)	440, 534
XmiI	GTMKAC	1 cut(s)	584
XspI	CTAG	2 cut(s)	18, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.