Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014936

Physical Location & Seq

Genomic Coordinates Forward (+)

20172023 .. 20174800

Gene Structure 2778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG200800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATGGAAAAAATACTAGTTGCAAGGATGATCATCATGATCATCAGGATCATGATGATGAGGATGTTCCACTTCCGGGATTTAGGTTTCACCCAACAGATGAAGAACTAGTTGGGTTCTATCTCCGCCGGAAGATTCAGAAGAAAGCCATCAGCTTAGAGCTCATCAAATCAATTGATATCTACAAGCATGATCCTTGGGATCTTCCAAAAGCTACAACTACTGCAGGAGACAAAGAGTGGTACTTCTTCTGCAGAAGAGGGAGAAAGTACAAGAACAGTATCAGACCTAATAGAGTAACCGGATCTGGGTTTTGGAAAGCAACTGGGATAGACAAGCCAGTTCATGATTCATACAGTAACTGCATTGGGCTGAAGAAAACTCTGGTTTACTACCGCGGAAGTGCCGGAAAAGGCACCAAAACTGATTGGATGATGCACGAATTTCGCCGTCCATCCACCAATGACAACAACAATGTTCACACTAACCACACCTCCTGCACTGCTATATCACACACTGATCCTCAAGAAGCTGAAATTTGGACATTGTGTCGGATATTCAAGAGATCTGTGTCACATAGAAAGTATACACCAGACTGGAGAGAATTGTCTGCTAAACAATCCAGCTCTAAGAAATGCAATACGACTGATCAAGATCGTCATCAAGAGCCCACAAACATCAATCGAGAATCTTATATCAATTTTGGTGCTTCAACCATTTGCTACGAAGAGAAGAAGCCCAATGTTCTGAACCATACTAATTATAACAACGGAAGCAACAGTAACCAGACATTGCAGAATGTAGGTCAGTTCAGCTCCGGAATGACTACTGCTACGCATCCATGCAACATGGATTCGTTCACATCGAGCTATTCATATGCAGATATTGAGAATCATGACTTTTTTAACGACAACTGGGAAGAGTTCAAATCAGTTGTACAGCTTGCTCTTGACCCATCGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006082 GO:0006355 GO:0006520 GO:0006560 GO:0006561 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009311 GO:0009312 GO:0009403 GO:0009404 GO:0009628 GO:0009651 GO:0009700 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009987 GO:0010120 GO:0010150 GO:0010468 GO:0010556 GO:0016051 GO:0016053 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034637 GO:0034641 GO:0042430 GO:0042435 GO:0042440 GO:0042538 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046148 GO:0046217 GO:0046283 GO:0046351 GO:0046394 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

322

Amino Acids

37.23

Weight (kDa)

7.25

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	26 - 150	4.1e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12910
fragaria_vesca	FvH4_3g15610
malus_domestica	MD00G1130200.v1.1 MD05G1221100.v1.1
prunus_persica	Prupe.4G138500_v2.0.a1
pyrus_communis	pycom05g20440 pycom10g17400
rosa_chinensis	RchiOBHm_Chr5g0026231
rosa_laevigata	RLG00000032915
rosa_multiflora	Rmu_sc0000632.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053080
rosa_rugosa	Rorug05G0091600
rosa_samantha	Rh5AG184700 Rh5CG200800 Rh5DG183300
rosa_wichuraiana	Rw5G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	587
AccII	CGCG	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	818
AciI	CCGC	3 cut(s)	127, 397, 399
AclWI	GGATC	5 cut(s)	57, 188, 210, 313, 515
AcsI	RAATTY	2 cut(s)	443, 537
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	245, 272, 939
AfiI	CCNNNNNNNGG	2 cut(s)	77, 309
AgsI	TTSAA	3 cut(s)	562, 714, 928
AhdI	GACNNNNNGTC	1 cut(s)	549
AhlI	ACTAGT	2 cut(s)	17, 109
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	8 cut(s)	156, 163, 215, 533, 627, 816, 870, 943
AluI	AGCT	8 cut(s)	156, 163, 215, 533, 627, 816, 870, 943
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	5 cut(s)	57, 188, 210, 313, 515
AlwNI	CAGNNNCTG	1 cut(s)	363
Aor13HI	TCCGGA	1 cut(s)	818
ApoI	RAATTY	2 cut(s)	443, 537
ArsI	GACNNNNNNTTYG	1 cut(s)	944
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	165, 672
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	3 cut(s)	158, 463, 964
BceAI	ACGGC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BclI	TGATCA	3 cut(s)	31, 40, 649
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	225
BcuI	ACTAGT	2 cut(s)	17, 109
BfaI	CTAG	2 cut(s)	18, 110
BfmI	CTRYAG	2 cut(s)	225, 253
BglII	AGATCT	1 cut(s)	566
Bme1390I	CCNGG	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	549
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	2 cut(s)	336, 925
BmsI	GCATC	2 cut(s)	426, 847
BmuI	ACTGGG	2 cut(s)	336, 925
BpmI	CTGGAG	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	78
BsaBI	GATNNNNATC	3 cut(s)	33, 654, 660
BsaJI	CCNNGG	2 cut(s)	197, 397
BsaWI	WCCGGW	2 cut(s)	302, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 309
Bse1I	ACTGG	4 cut(s)	331, 341, 602, 920
Bse3DI	GCAATG	1 cut(s)	791
Bse8I	GATNNNNATC	3 cut(s)	33, 654, 660
BseAI	TCCGGA	1 cut(s)	818
BseDI	CCNNGG	2 cut(s)	197, 397
BseGI	GGATG	6 cut(s)	10, 34, 70, 438, 455, 838
BseJI	GATNNNNATC	3 cut(s)	33, 654, 660
BseLI	CCNNNNNNNGG	2 cut(s)	77, 309
BseMI	GCAATG	1 cut(s)	791
BseNI	ACTGG	4 cut(s)	331, 341, 602, 920
BsgI	GTGCAG	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	77, 130, 303, 408, 819
BslI	CCNNNNNNNGG	2 cut(s)	77, 309
BsmAI	GTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	165, 672
Bsp13I	TCCGGA	1 cut(s)	818
Bsp1407I	TGTACA	1 cut(s)	937
BspACI	CCGC	3 cut(s)	127, 397, 399
BspEI	TCCGGA	1 cut(s)	818
BspFNI	CGCG	1 cut(s)	399
BspHI	TCATGA	4 cut(s)	37, 52, 346, 895
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	2 cut(s)	229, 257
BspPI	GGATC	5 cut(s)	57, 188, 210, 313, 515
BspT107I	GGYRCC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	4 cut(s)	331, 341, 602, 920
BssECI	CCNNGG	2 cut(s)	197, 397
BssNAI	GTATAC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	281, 359, 782
Bst6I	CTCTTC	3 cut(s)	253, 723, 915
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	1 cut(s)	945
BstDEI	CTNAG	2 cut(s)	157, 630
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	6 cut(s)	10, 34, 70, 438, 455, 838
BstFNI	CGCG	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	2 cut(s)	225, 253
BstUI	CGCG	1 cut(s)	399
BstX2I	RGATCY	3 cut(s)	202, 305, 566
BstYI	RGATCY	3 cut(s)	202, 305, 566
BstZ17I	GTATAC	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	6 cut(s)	10, 34, 70, 438, 455, 838
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	501, 516
Cac8I	GCNNGC	1 cut(s)	945
CaiI	CAGNNNCTG	1 cut(s)	363
CciI	TCATGA	4 cut(s)	37, 52, 346, 895
Cfr42I	CCGCGG	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	244, 271, 938
CviAII	CATG	7 cut(s)	38, 53, 191, 347, 843, 850, 896
CviQI	GTAC	3 cut(s)	244, 271, 938
DdeI	CTNAG	2 cut(s)	157, 630
DriI	GACNNNNNGTC	1 cut(s)	549
Eam1104I	CTCTTC	3 cut(s)	253, 723, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	549
EarI	CTCTTC	3 cut(s)	253, 723, 915
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	165, 672
Eco32I	GATATC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	165, 672
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	7 cut(s)	41, 56, 194, 350, 846, 853, 899
FatI	CATG	7 cut(s)	37, 52, 190, 346, 842, 849, 895
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	3 cut(s)	31, 40, 649
FblI	GTMKAC	1 cut(s)	587
FokI	GGATG	6 cut(s)	17, 41, 77, 442, 445, 825
FriOI	GRGCYC	2 cut(s)	165, 672
FspBI	CTAG	2 cut(s)	18, 110
GsuI	CTGGAG	1 cut(s)	619
HapII	CCGG	5 cut(s)	77, 130, 303, 408, 819
Hin1II	CATG	7 cut(s)	41, 56, 194, 350, 846, 853, 899
HinfI	GANTC	5 cut(s)	136, 350, 689, 854, 892
HpaII	CCGG	5 cut(s)	77, 130, 303, 408, 819
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	4 cut(s)	391, 481, 588, 861
Hpy188I	TCNGA	4 cut(s)	141, 287, 555, 750
Hpy8I	GTNNAC	4 cut(s)	391, 481, 588, 861
HpyCH4III	ACNGT	3 cut(s)	281, 359, 782
HpyF3I	CTNAG	2 cut(s)	157, 630
Hsp92II	CATG	7 cut(s)	41, 56, 194, 350, 846, 853, 899
Kpn2I	TCCGGA	1 cut(s)	818
Ksp22I	TGATCA	3 cut(s)	31, 40, 649
KspI	CCGCGG	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	821
LweI	GCATC	2 cut(s)	426, 847
MaeI	CTAG	2 cut(s)	18, 110
MaeIII	GTNAC	4 cut(s)	298, 359, 573, 782
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	3 cut(s)	202, 305, 566
MhlI	GDGCHC	2 cut(s)	165, 672
MluCI	AATT	6 cut(s)	174, 443, 537, 605, 700, 760
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	4 cut(s)	55, 254, 505, 534
MroI	TCCGGA	1 cut(s)	818
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	5 cut(s)	77, 130, 303, 408, 819
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	399
NciI	CCSGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	877
NlaIII	CATG	7 cut(s)	41, 56, 194, 350, 846, 853, 899
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	573
PagI	TCATGA	4 cut(s)	37, 52, 346, 895
PcsI	WCGNNNNNNNCGW	1 cut(s)	863
PfeI	GAWTC	5 cut(s)	136, 350, 689, 854, 892
PfoI	TCCNGGA	1 cut(s)	76
PsiI	TTATAA	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	418
PstI	CTGCAG	2 cut(s)	229, 257
PstNI	CAGNNNCTG	1 cut(s)	363
PsuI	RGATCY	3 cut(s)	202, 305, 566
RsaI	GTAC	3 cut(s)	245, 272, 939
RsaNI	GTAC	3 cut(s)	244, 271, 938
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	165, 672
SfaNI	GCATC	2 cut(s)	426, 847
SfcI	CTRYAG	2 cut(s)	225, 253
Sfr303I	CCGCGG	1 cut(s)	400
SgrBI	CCGCGG	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
SpeI	ACTAGT	2 cut(s)	17, 109
Sse9I	AATT	6 cut(s)	174, 443, 537, 605, 700, 760
SsiI	CCGC	3 cut(s)	127, 397, 399
SspMI	CTAG	2 cut(s)	18, 110
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	281, 359, 782
TaqI	TCGA	2 cut(s)	685, 866
TasI	AATT	6 cut(s)	174, 443, 537, 605, 700, 760
TatI	WGTACW	2 cut(s)	270, 937
TfiI	GAWTC	5 cut(s)	136, 350, 689, 854, 892
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	2 cut(s)	508, 523
TseFI	GTSAC	1 cut(s)	573
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	4 cut(s)	117, 335, 342, 864
TspGWI	ACGGA	1 cut(s)	786
TspRI	CASTG	2 cut(s)	508, 523
XapI	RAATTY	2 cut(s)	443, 537
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	2 cut(s)	18, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.