AT3G13010
ERF Family

BEST Arabidopsis thaliana protein match is hAT transposon superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009746
Physical Location & Seq
Reverse (-)
4162757 .. 4164733
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13010.1

Sequence Viewer

Length: 1719 bp
ATGGCTAGCATCGTGGTGAATGTTCATGACTATGGAACTTGGGTGGAGGATGGAGCTCGGGTTCAGTGCACATTTTGCGACAAGCGAATGAATGACTTTAATCGTCTCAAGTATCATTTGGGAAATGTCTGTAAGGACGTAACCCCATGCTCACAAGTTCCATTACCTATTAGAGAGGCATTTTTTAAGATGGTTATGGAGCAGAGATATCCTGATCGTAAACGTGGAAGATCCAACAAAGGTTTTACTGCTTCTGAGACAGCTGCGGAAGCTGAAAAACTAGCCCAAATGGACGTTGCTCAGTTCTTTTATGAACACGGTGTCGACTTCTCTGCTGTGGATTCGACAAGTTTCAAAAAGATGATGATGATCAAGACAGTAGGAGGAGAAGGTGGTGGTCAGATGATCCCTGACTCTCGTGATTTAAACGGCTGGATGTTTCAAGAAGCTTTGAAGAAGGTGCAAGATCGTGTGAAGGAGATTAAAGCTTCGTGGGAGATCACTGGGTGCAGCATCCTCTTTGATGCTTGGATTGGCCCGAAAGGACGTGATCTGGTTACTTTCGTTGCAGACTGTCCAGCTGGGGCAGTGTATCTGAAATCCGCTGATGTTTCTGATATAAAAACCGATGTCACTGCCTTAACTTCGCTGGTAAATGGGATCGTTGAGGAAGTTGGAGTGCGTAACGTGACTCAGATTATTGCATGTTCCACCTCTGGTTGGGTTGGTGATTTAGGCAAGCAACTTGCTGGTCAAGTTTTCTGGTCTGTGAGTCTTTCCTATTGCTTAAAGCTTATGCTGGTGGAGATTGGGAAAATGTATTCCTTTGAAGACATATTTGAAAAGGTCAAGCTCCTTCTAGATCTGATCAATAACAACCCCTCCTTTCTATATGTCTTCAGAGAGAATAGTCATAAAGTCGACGTATCCTCAGAGTGTGAGTTTGTTATGCCGTATCTAACTCTAGAGCACATTTATTGGGTGAGGAGGGCAGGGTTGTTTGCTAGTCCTGAATGGAAGAAAGAACAAGGCATAGCAATATCCAGTTTTGTGAATGATTCCACATTTTGGGAATCTCTTGACAAAATTGTGGGAAGTACATCTTCTCTGGTTCATGGATGGTTATGGTTTTCAAGAGGCAGCAAGCATGTTGCATATGCCTATCATTTTATAGAGAGCATCAAGAAGAACGTCGCGTGGACTTTCAAGTACGAGAGACAGTTTTACGAGCCGACATGGAATGTGATAGATGACGTGTGGCACAACAACCACAATCCTCTTCATGCTGCTGGTTATTTTCTGAATCCGATGGCTTACTACTCCGATGATTTCCATACTTATCAACATGTATACACCGGTCTTGCCTTCTCTCTGGTTCACTTGGTAAAAGAACCTCACCTTCAAGTGAAGATTGGTACACAGCTTGATGTGTATAGATACGGTAGAGGTTGCTTTATGAAAGCCAGTCAAGCTGGTCAGCTCAATGGAGTCTCTCCAGTTAATTGGTGGACTCAAAAGGCGAACCAGTATCCTGAACTGCAGAATCTCGCTGTTAAGATTCTGAGCCAAACAAGTGAAGGTGCTTCAAGGTACAAGCTGAAGAGAAGCGTAGCAGAGAAGCTGTTGCTCACTGAAGGAATGAGCCACTGTGAACGAAAGCATCTGGAAGAGTTGGCTGTTGTACATTACAATCTCCAACTACAAAGCTGCAAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

572

Amino Acids

65.1

Weight (kDa)

7.0

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 137 - 284 4.9e-48 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009746)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13010 AT3G13020 AT3G13030 AT3G13030 AT3G13030 AT3G13030 AT3G13030
fragaria_vesca FvH4_6g36422
malus_domestica MD09G1169400.v1.1
pyrus_communis pycom09g08680
rosa_chinensis RchiOBHm_Chr2g0148401
rosa_laevigata RLG00000020348
rosa_roxburghii Rroxscaffold_2G00098760
rosa_rugosa Rorug02G0406800
rosa_samantha Rh2AG465500 Rh2BG478400 Rh2BG478500 Rh2CG452000 Rh2DG487200 Rh2DG487300
rosa_wichuraiana Rw2G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1068
AccI GTMKAC 3 cut(s) 324, 921, 1350
AccII CGCG 1 cut(s) 1196
AciI CCGC 2 cut(s) 266, 603
AclWI GGATC 3 cut(s) 225, 400, 668
AcuI CTGAAG 3 cut(s) 883, 1619, 1653
AdeI CACNNNGTG 1 cut(s) 507
AfaI GTAC 5 cut(s) 1099, 1211, 1417, 1592, 1683
AfiI CCNNNNNNNGG 2 cut(s) 720, 1068
AflIII ACRYGT 2 cut(s) 1254, 1345
AgeI ACCGGT 1 cut(s) 1355
AgsI TTSAA 9 cut(s) 355, 443, 454, 830, 842, 1134, 1207, 1403, 1587
AjiI CACGTC 2 cut(s) 548, 1255
AloI GAACNNNNNNTCC 2 cut(s) 45, 77
Alw21I GWGCWC 3 cut(s) 58, 71, 972
Alw26I GTCTC 4 cut(s) 110, 251, 1210, 1495
Alw44I GTGCAC 1 cut(s) 67
AlwI GGATC 3 cut(s) 225, 400, 668
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 535
ApaLI GTGCAC 1 cut(s) 67
ApeKI GCWGC 5 cut(s) 263, 510, 1140, 1286, 1707
AsiGI ACCGGT 1 cut(s) 1355
AspS9I GGNCC 1 cut(s) 536
AsuHPI GGTGA 4 cut(s) 28, 740, 994, 1388
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 837, 889
Bbv12I GWGCWC 3 cut(s) 58, 71, 972
BbvI GCAGC 5 cut(s) 250, 522, 1152, 1273, 1694
BccI CCATC 4 cut(s) 44, 184, 1113, 1303
BceAI ACGGC 2 cut(s) 445, 937
BcgI CGANNNNNNTGC 4 cut(s) 314, 348, 617, 651
BciVI GTATCC 2 cut(s) 937, 1539
BclI TGATCA 2 cut(s) 369, 867
BcoDI GTCTC 4 cut(s) 110, 251, 1210, 1495
BfaI CTAG 5 cut(s) 6, 281, 860, 965, 1005
BfmI CTRYAG 1 cut(s) 1538
BfuI GTATCC 2 cut(s) 937, 1539
BglII AGATCT 1 cut(s) 862
BisI GCNGC 5 cut(s) 264, 511, 1141, 1287, 1708
BlsI GCNGC 5 cut(s) 265, 512, 1142, 1288, 1709
BmeT110I CYCGRG 1 cut(s) 57
BmgBI CACGTC 2 cut(s) 548, 1255
BmgT120I GGNCC 1 cut(s) 536
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 5 cut(s) 18, 514, 522, 1188, 1669
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 2 cut(s) 837, 889
BpmI CTGGAG 1 cut(s) 1479
BpuEI CTTGAG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 1355
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 866, 896
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 1068
Bse118I RCCGGY 1 cut(s) 1355
Bse1I ACTGG 5 cut(s) 508, 1044, 1464, 1496, 1525
Bse8I GATNNNNATC 1 cut(s) 368
BseGI GGATG 4 cut(s) 55, 441, 513, 1124
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 2 cut(s) 720, 1068
BseMII CTCAG 5 cut(s) 246, 314, 707, 945, 1553
BseNI ACTGG 5 cut(s) 508, 1044, 1464, 1496, 1525
BseRI GAGGAG 2 cut(s) 399, 1000
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 5 cut(s) 250, 522, 1152, 1273, 1694
BseYI CCCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 1196
BshFI GGCC 1 cut(s) 537
BshTI ACCGGT 1 cut(s) 1355
BsiHKAI GWGCWC 3 cut(s) 58, 71, 972
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 1356
BslI CCNNNNNNNGG 2 cut(s) 720, 1068
BsmAI GTCTC 4 cut(s) 110, 251, 1210, 1495
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 537
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 58, 71, 972
Bsp1407I TGTACA 1 cut(s) 1681
BspACI CCGC 2 cut(s) 266, 603
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 5 cut(s) 247, 313, 706, 944, 1554
BspFNI CGCG 1 cut(s) 1196
BspHI TCATGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 1542
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 3 cut(s) 225, 400, 668
BsrFI RCCGGY 1 cut(s) 1355
BsrGI TGTACA 1 cut(s) 1681
BsrI ACTGG 5 cut(s) 508, 1044, 1464, 1496, 1525
BssAI RCCGGY 1 cut(s) 1355
BssNAI GTATAC 1 cut(s) 1351
BssSI CACGAG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 1351
Bst2BI CACGAG 1 cut(s) 417
Bst4CI ACNGT 6 cut(s) 320, 379, 575, 1221, 1442, 1649
Bst6I CTCTTC 3 cut(s) 1284, 1595, 1662
BstAPI GCANNNNNTGC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 1681
BstC8I GCNNGC 3 cut(s) 7, 740, 1145
BstDEI CTNAG 5 cut(s) 255, 300, 693, 931, 1562
BstF5I GGATG 4 cut(s) 55, 441, 513, 1124
BstFNI CGCG 1 cut(s) 1196
BstMAI GTCTC 4 cut(s) 110, 251, 1210, 1495
BstMWI GCNNNNNNNGC 3 cut(s) 75, 269, 1469
BstNSI RCATGY 3 cut(s) 708, 1151, 1349
BstSFI CTRYAG 1 cut(s) 1538
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 5 cut(s) 250, 522, 1152, 1273, 1694
BstV2I GAAGAC 2 cut(s) 837, 889
BstX2I RGATCY 2 cut(s) 230, 862
BstXI CCANNNNNNTGG 1 cut(s) 1503
BstYI RGATCY 2 cut(s) 230, 862
BstZ17I GTATAC 1 cut(s) 1351
BsuI GTATCC 2 cut(s) 937, 1539
BsuRI GGCC 1 cut(s) 537
BtrI CACGTC 2 cut(s) 548, 1255
BtsCI GGATG 4 cut(s) 55, 441, 513, 1124
BtsI GCAGTG 2 cut(s) 594, 633
BtsIMutI CAGTG 6 cut(s) 71, 501, 594, 633, 1629, 1645
Cac8I GCNNGC 3 cut(s) 7, 740, 1145
CciI TCATGA 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 1355
Cfr13I GGNCC 1 cut(s) 536
Csp6I GTAC 5 cut(s) 1098, 1210, 1416, 1591, 1682
CspAI ACCGGT 1 cut(s) 1355
CviAII CATG 8 cut(s) 26, 147, 705, 1115, 1148, 1236, 1283, 1346
CviQI GTAC 5 cut(s) 1098, 1210, 1416, 1591, 1682
DdeI CTNAG 5 cut(s) 255, 300, 693, 931, 1562
DraI TTTAAA 1 cut(s) 426
DraIII CACNNNGTG 1 cut(s) 507
Eam1104I CTCTTC 3 cut(s) 1284, 1595, 1662
EarI CTCTTC 3 cut(s) 1284, 1595, 1662
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 3 cut(s) 883, 1619, 1653
Eco88I CYCGRG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 8 cut(s) 29, 150, 708, 1118, 1151, 1239, 1286, 1349
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FatI CATG 8 cut(s) 25, 146, 704, 1114, 1147, 1235, 1282, 1345
FauNDI CATATG 1 cut(s) 1156
FbaI TGATCA 2 cut(s) 369, 867
FblI GTMKAC 3 cut(s) 324, 921, 1350
Fnu4HI GCNGC 5 cut(s) 264, 511, 1141, 1287, 1708
FokI GGATG 4 cut(s) 62, 448, 500, 1131
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 5 cut(s) 264, 511, 1141, 1287, 1708
FspBI CTAG 5 cut(s) 6, 281, 860, 965, 1005
GluI GCNGC 5 cut(s) 264, 511, 1141, 1287, 1708
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 1479
HaeIII GGCC 1 cut(s) 537
HapII CCGG 1 cut(s) 1356
Hin1II CATG 8 cut(s) 29, 150, 708, 1118, 1151, 1239, 1286, 1349
HincII GTYRAC 2 cut(s) 325, 922
HindII GTYRAC 2 cut(s) 325, 922
HindIII AAGCTT 3 cut(s) 447, 486, 791
HpaII CCGG 1 cut(s) 1356
HphI GGTGA 4 cut(s) 28, 740, 994, 1388
Hpy99I CGWCG 2 cut(s) 926, 1196
HpyAV CCTTC 8 cut(s) 383, 451, 469, 866, 1375, 1409, 1571, 1628
HpyCH4III ACNGT 6 cut(s) 320, 379, 575, 1221, 1442, 1649
HpyCH4IV ACGT 8 cut(s) 138, 223, 294, 547, 687, 924, 1191, 1254
HpyCH4V TGCA 8 cut(s) 69, 463, 510, 569, 704, 1154, 1540, 1710
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 269, 1469
HpyF3I CTNAG 5 cut(s) 255, 300, 693, 931, 1562
HpySE526I ACGT 8 cut(s) 138, 223, 294, 547, 687, 924, 1191, 1254
Hsp92II CATG 8 cut(s) 29, 150, 708, 1118, 1151, 1239, 1286, 1349
Ksp22I TGATCA 2 cut(s) 369, 867
LmnI GCTCC 3 cut(s) 53, 199, 858
Lsp1109I GCAGC 5 cut(s) 250, 522, 1152, 1273, 1694
LweI GCATC 5 cut(s) 18, 514, 522, 1188, 1669
MaeI CTAG 5 cut(s) 6, 281, 860, 965, 1005
MaeII ACGT 8 cut(s) 138, 223, 294, 547, 687, 924, 1191, 1254
MaeIII GTNAC 5 cut(s) 139, 556, 631, 683, 688
MflI RGATCY 2 cut(s) 230, 862
MhlI GDGCHC 3 cut(s) 58, 71, 972
MluCI AATT 2 cut(s) 1086, 1501
MlyI GAGTC 5 cut(s) 407, 685, 781, 1497, 1504
MmeI TCCRAC 2 cut(s) 258, 655
MseI TTAA 8 cut(s) 99, 186, 425, 483, 641, 788, 1500, 1554
MslI CAYNNNNRTG 2 cut(s) 14, 30
MspA1I CMGCKG 3 cut(s) 263, 581, 605
MspI CCGG 1 cut(s) 1356
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 3 cut(s) 75, 269, 1469
NdeI CATATG 1 cut(s) 1156
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 8 cut(s) 29, 150, 708, 1118, 1151, 1239, 1286, 1349
NmuCI GTSAC 2 cut(s) 631, 688
NspI RCATGY 3 cut(s) 708, 1151, 1349
PagI TCATGA 1 cut(s) 25
PciI ACATGT 1 cut(s) 1345
PfeI GAWTC 6 cut(s) 341, 1058, 1073, 1303, 1543, 1558
PflMI CCANNNNNTGG 1 cut(s) 1068
PinAI ACCGGT 1 cut(s) 1355
PkrI GCNGC 5 cut(s) 265, 512, 1142, 1288, 1709
PleI GAGTC 5 cut(s) 407, 685, 780, 1496, 1504
PpsI GAGTC 5 cut(s) 407, 685, 780, 1496, 1504
PscI ACATGT 1 cut(s) 1345
Psp124BI GAGCTC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 581
PspPI GGNCC 1 cut(s) 536
PstI CTGCAG 1 cut(s) 1542
PsuI RGATCY 2 cut(s) 230, 862
PvuII CAGCTG 2 cut(s) 263, 581
RsaI GTAC 5 cut(s) 1099, 1211, 1417, 1592, 1683
RsaNI GTAC 5 cut(s) 1098, 1210, 1416, 1591, 1682
RseI CAYNNNNRTG 2 cut(s) 14, 30
SacI GAGCTC 1 cut(s) 58
SalI GTCGAC 2 cut(s) 323, 920
SaqAI TTAA 8 cut(s) 99, 186, 425, 483, 641, 788, 1500, 1554
SatI GCNGC 5 cut(s) 264, 511, 1141, 1287, 1708
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 5 cut(s) 407, 685, 781, 1497, 1504
SduI GDGCHC 3 cut(s) 58, 71, 972
SfaNI GCATC 5 cut(s) 18, 514, 522, 1188, 1669
SfcI CTRYAG 1 cut(s) 1538
SmiMI CAYNNNNRTG 2 cut(s) 14, 30
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 1086, 1501
SsiI CCGC 2 cut(s) 266, 603
SspMI CTAG 5 cut(s) 6, 281, 860, 965, 1005
SstI GAGCTC 1 cut(s) 58
TaaI ACNGT 6 cut(s) 320, 379, 575, 1221, 1442, 1649
TaiI ACGT 8 cut(s) 141, 226, 297, 550, 690, 927, 1194, 1257
TaqI TCGA 3 cut(s) 324, 344, 921
TasI AATT 2 cut(s) 1086, 1501
TatI WGTACW 2 cut(s) 1097, 1681
TfiI GAWTC 6 cut(s) 341, 1058, 1073, 1303, 1543, 1558
Tru1I TTAA 8 cut(s) 99, 186, 425, 483, 641, 788, 1500, 1554
Tru9I TTAA 8 cut(s) 99, 186, 425, 483, 641, 788, 1500, 1554
TscAI CASTG 6 cut(s) 71, 508, 594, 640, 1636, 1652
TseFI GTSAC 2 cut(s) 631, 688
TseI GCWGC 5 cut(s) 263, 510, 1140, 1286, 1707
Tsp45I GTSAC 2 cut(s) 631, 688
TspDTI ATGAA 6 cut(s) 14, 104, 327, 1103, 1271, 1472
TspRI CASTG 6 cut(s) 71, 508, 594, 640, 1636, 1652
Van91I CCANNNNNTGG 1 cut(s) 1068
VneI GTGCAC 1 cut(s) 67
XbaI TCTAGA 2 cut(s) 859, 964
XceI RCATGY 3 cut(s) 708, 1151, 1349
XcmI CCANNNNNNNNNTGG 1 cut(s) 1503
XmiI GTMKAC 3 cut(s) 324, 921, 1350
XspI CTAG 5 cut(s) 6, 281, 860, 965, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.