Rh2DG487200

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009746
Physical Location & Seq
Reverse (-)
70354485 .. 70355123
639 bp
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UTR
Exon/CDS
Intron
Rh2DG487200.1

Sequence Viewer

Length: 468 bp
ATGATTCATGTTAAATTGAATGCAGCTATGTGGTGGTCTTCTTATGGGAAACAATGTCCTGAACTCCAGAGGTTTGCCATTAGAGTTTTGAGCCAGAACTGCGATGGTGCTACAAGATATGGACTCAGAAGGACTCTAGCTGAGAAGCTGGTTACAAATGGAAGGAATCCTATCGAGCAGCAACGGTTGAGTGATCTGACTTTTCTTCATTATAATTTGCAATTACAGAAGTTTTGCTCAGGTGTGAAGAGCGGCATTGAAGCTGAGGATATTCATCCAATGGATGACTGGATCATCGATGAAGCACAAGATATTGTTTCTCAGAATGGGGATGTGAAGGTGGAGCCTGCTAATGGAGCTTCCAGTGAAGGATGTTCAAGATTTCAGCTTAAAATAGAATCCATTAAAATAAGATGGTATCAGTTACCTGAAAACTATTGCAATATCCTTACTCTTTATGATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

155

Amino Acids

17.8

Weight (kDa)

5.91

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 6 - 73 5.8e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009746)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13010 AT3G13020 AT3G13030 AT3G13030 AT3G13030 AT3G13030 AT3G13030
fragaria_vesca FvH4_6g36422
malus_domestica MD09G1169400.v1.1
pyrus_communis pycom09g08680
rosa_chinensis RchiOBHm_Chr2g0148401
rosa_laevigata RLG00000020348
rosa_roxburghii Rroxscaffold_2G00098760
rosa_rugosa Rorug02G0406800
rosa_samantha Rh2AG465500 Rh2BG478400 Rh2BG478500 Rh2CG452000 Rh2DG487200 Rh2DG487300
rosa_wichuraiana Rw2G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 252
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 3 cut(s) 19, 260, 378
AluBI AGCT 6 cut(s) 26, 140, 148, 263, 359, 388
AluI AGCT 6 cut(s) 26, 140, 148, 263, 359, 388
AlwI GGATC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 23, 178
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 35, 190
BccI CCATC 2 cut(s) 98, 408
BfaI CTAG 1 cut(s) 137
BisI GCNGC 3 cut(s) 24, 179, 253
BlsI GCNGC 3 cut(s) 25, 180, 254
BmiI GGNNCC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 2 cut(s) 238, 264
Bsa29I ATCGAT 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 293, 363
Bse8I GATNNNNATC 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 4 cut(s) 274, 289, 337, 377
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 5 cut(s) 132, 139, 252, 255, 335
BseNI ACTGG 2 cut(s) 293, 363
BseXI GCAGC 2 cut(s) 35, 190
BshVI ATCGAT 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 353
BsmI GAATGC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 193, 291
BspACI CCGC 1 cut(s) 252
BspCNI CTCAG 5 cut(s) 133, 138, 251, 256, 334
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 1 cut(s) 299
BspQI GCTCTTC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 252
BsrI ACTGG 2 cut(s) 293, 363
BssMI GATC 2 cut(s) 193, 291
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 5 cut(s) 125, 141, 238, 264, 321
BstF5I GGATG 4 cut(s) 274, 289, 337, 377
BstKTI GATC 2 cut(s) 196, 294
BstMBI GATC 2 cut(s) 193, 291
BstMWI GCNNNNNNNGC 2 cut(s) 99, 356
BstV1I GCAGC 2 cut(s) 35, 190
BstV2I GAAGAC 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 4 cut(s) 274, 289, 337, 377
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 348
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 1 cut(s) 8
CviJI RGCY 8 cut(s) 26, 93, 140, 148, 263, 346, 359, 388
CviKI_1 RGCY 8 cut(s) 26, 93, 140, 148, 263, 346, 359, 388
DdeI CTNAG 5 cut(s) 125, 141, 238, 264, 321
DpnI GATC 2 cut(s) 195, 293
DpnII GATC 2 cut(s) 193, 291
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
FaeI CATG 1 cut(s) 11
FaiI YATR 6 cut(s) 9, 29, 45, 120, 213, 459
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 24, 179, 253
FokI GGATG 4 cut(s) 261, 296, 344, 384
Fsp4HI GCNGC 3 cut(s) 24, 179, 253
FspBI CTAG 1 cut(s) 137
GluI GCNGC 3 cut(s) 24, 179, 253
GsuI CTGGAG 1 cut(s) 50
Hin1II CATG 1 cut(s) 11
HinfI GANTC 5 cut(s) 4, 123, 133, 166, 398
Hpy188I TCNGA 3 cut(s) 128, 198, 324
Hpy188III TCNNGA 3 cut(s) 59, 67, 378
HpyAV CCTTC 4 cut(s) 123, 156, 331, 362
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 23, 220, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 356
HpyF3I CTNAG 5 cut(s) 125, 141, 238, 264, 321
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 2 cut(s) 193, 291
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 2 cut(s) 343, 356
LpnPI CCDG 9 cut(s) 72, 80, 107, 134, 225, 274, 360, 376, 441
Lsp1109I GCAGC 2 cut(s) 35, 190
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 151, 423
MalI GATC 2 cut(s) 195, 293
MbiI CCGCTC 1 cut(s) 252
MboI GATC 2 cut(s) 193, 291
MboII GAAGA 3 cut(s) 30, 197, 259
MluCI AATT 3 cut(s) 14, 214, 221
MlyI GAGTC 2 cut(s) 117, 127
MnlI CCTC 2 cut(s) 63, 259
MseI TTAA 4 cut(s) 12, 390, 405, 466
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 99, 356
NdeII GATC 2 cut(s) 193, 291
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 242
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 4, 166, 398
PkrI GCNGC 3 cut(s) 25, 180, 254
PleI GAGTC 2 cut(s) 117, 127
PpsI GAGTC 2 cut(s) 117, 127
PsiI TTATAA 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 12, 390, 405, 466
SatI GCNGC 3 cut(s) 24, 179, 253
Sau3AI GATC 2 cut(s) 193, 291
SchI GAGTC 2 cut(s) 117, 127
Sse9I AATT 3 cut(s) 14, 214, 221
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 174, 297
TasI AATT 3 cut(s) 14, 214, 221
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 3 cut(s) 4, 166, 398
Tru1I TTAA 4 cut(s) 12, 390, 405, 466
Tru9I TTAA 4 cut(s) 12, 390, 405, 466
TscAI CASTG 1 cut(s) 370
TseI GCWGC 2 cut(s) 23, 178
TspDTI ATGAA 3 cut(s) 197, 263, 315
TspRI CASTG 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 2 cut(s) 101, 285
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.