Rh2BG478500

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009746
Physical Location & Seq
Reverse (-)
67431475 .. 67433193
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG478500.1

Sequence Viewer

Length: 1719 bp
ATGAACACATTGGGCATTTTCACTAACATTTCTCGAATCACTAATATTCATGATCATGGAAGAGTTGTTGATAGTAAAAAGGGTAGATTTCAATGCAACTACTGTGATAAAGAGGTGAGCGGTATCACCCGTTTGAAGTGCCATTTAGGAGGAATAGGGCCGGAAGTAAAACCATGTTTAGAGGTTCCTGCTGAGGTGAAGGAGCTGTGGAGAAACAAGTTGCTTGAAAGTCGTGGCAAGAAAGTTAACCACTCTTCCAGCTCAAATGGTGTTAAGCGTAAGAAGCATGAGACTTCTCAAACTTCTAGTTATCAGGATGGAAGCGAAGAAGATACAGACTCAATGTCAGAAGAAAATGCAACAGATTATGTCAACAGTCCCAATGGAAATATAGGCCTTCAAAGACGAGAAAGTAATGACATGAGAAATGTTTCGATATCAATGAACCCCCAAAAATGCATTGGTAGATTCTTTTATGAAACAGGCTTAGAATTTACTGCTGCAAATTCTCCTAGCTTCAAAAGAATGATAAATTCTGTTGCTGGTCCTGGTGTGAATTACAAGATTCCTAGCTGTGAAGAGCTTAAAGGTTGCATCTTTCAAGATGAAGTGAAGGAGATGCAAGAATATGTGAGAAAGATTAAGGAATCCTGGGCTACTACTGGATGTAGCATCTTGTTGGACAGTTGGATTGATGAAAAGGGTAGAAACCTCGTTAACTTTTTGGTCAACTGCCCTCAAGGCCCTGTTTATCTCTGTACTCATGATGTTTCATCTTCCATTGGTAATGTCGATGCCATACGTGCACTATTGGAGGGGATTATTAAGGATGTTGGGGCTGACAATGTTGTTCAGATTGTGGCAGATTCTACAACAGGCTGGGTTGGTGCTCTAGGCAAGGAGTTCAGTAAGCACAAAGGAGTGTTTTGGGCAGTGAGTGGATCTCATTGCATTGAGCTGATGCTAGAGAAGATTGGAATGAGTACCTCCACTAAGGGGATTTTGGATAAAGCGAAGACTATTACAAAATTCATACATGGGCATGAAGAAGTTTTGAAGATTTTGAAGAAACATACTTGTGGCCGTGACCTGATTAAGCCCTCCAAGATAAGAGGAGCAATGCCCTTTATGACTTTAGATAGTATTGTATACGAAATGCAGGAACTAAAAGACATGTTTGCCTCATCTGAGTGGAACATGTCAATCTGGGGTTCGAGAGTGGAGAGCAAGATGGTAGCAGATATAGTGGAAGATCAGTCCTTTTGGACTAGAGCTGAGATGGTCTCAAAAGCAACTATGCCGCTGGTTCGTGCTATTGAATTGATCTTTGAGGCTGACAAGCCACTTGTGGGGCACATATACGAAACCATGGATCAAGTGAAGGAGAGAATTAAAGAAGAATTAATAAACAAAAAGTCCCACTACAGGCCTTTTTGGGAAGTTATTGATGACATTTGGGACAATATTCTCCATATCCCTCTCCACGGGGCTGGTTATTATCTTAATCCAAGTCTCAAATATTCTAATGACTTCTATTGCGATGATGAGGTTTACCTTGGGCTTATGTGCTGCATTGCACAGATGGTGCGGGATCCTTCAATTCAAGATGTAATACACAATCAACTCAAGGAGTACATACGTGCTGAAGGCAGTTTCAAGGAGGGGAGTTCCTCTAGCCGAAGAATAACTCATCCAGGTAAAGAAGATAAAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

572

Amino Acids

64.55

Weight (kDa)

6.41

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 190 - 341 5.5e-48 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009746)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13010 AT3G13020 AT3G13030 AT3G13030 AT3G13030 AT3G13030 AT3G13030
fragaria_vesca FvH4_6g36422
malus_domestica MD09G1169400.v1.1
pyrus_communis pycom09g08680
rosa_chinensis RchiOBHm_Chr2g0148401
rosa_laevigata RLG00000020348
rosa_roxburghii Rroxscaffold_2G00098760
rosa_rugosa Rorug02G0406800
rosa_samantha Rh2AG465500 Rh2BG478400 Rh2BG478500 Rh2CG452000 Rh2DG487200 Rh2DG487300
rosa_wichuraiana Rw2G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 1149
AciI CCGC 3 cut(s) 120, 1301, 1588
AclWI GGATC 4 cut(s) 949, 1380, 1586, 1599
AcoI YGGCCR 1 cut(s) 1081
AcsI RAATTY 4 cut(s) 491, 505, 532, 1028
AcuI CTGAAG 1 cut(s) 1665
AfaI GTAC 3 cut(s) 760, 985, 1634
AfiI CCNNNNNNNGG 4 cut(s) 996, 1349, 1425, 1484
AflIII ACRYGT 2 cut(s) 1173, 1197
AhdI GACNNNNNGTC 1 cut(s) 343
AjnI CCWGG 3 cut(s) 547, 650, 1693
AluBI AGCT 7 cut(s) 205, 261, 516, 573, 583, 958, 1274
AluI AGCT 7 cut(s) 205, 261, 516, 573, 583, 958, 1274
Alw21I GWGCWC 2 cut(s) 808, 892
Alw26I GTCTC 3 cut(s) 284, 1288, 1517
Alw44I GTGCAC 1 cut(s) 804
AlwI GGATC 4 cut(s) 949, 1380, 1586, 1599
AoxI GGCC 5 cut(s) 158, 394, 742, 1081, 1427
ApaLI GTGCAC 1 cut(s) 804
ApeKI GCWGC 2 cut(s) 500, 1569
ApoI RAATTY 4 cut(s) 491, 505, 532, 1028
AseI ATTAAT 1 cut(s) 1403
Asp700I GAANNNNTTC 1 cut(s) 430
AspS9I GGNCC 3 cut(s) 158, 545, 743
AsuHPI GGTGA 3 cut(s) 118, 127, 208
AvaII GGWCC 1 cut(s) 545
BaeGI GKGCMC 2 cut(s) 808, 1356
BamHI GGATCC 1 cut(s) 1591
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 2 cut(s) 808, 892
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 487, 1556
BccI CCATC 4 cut(s) 311, 1225, 1273, 1576
BceAI ACGGC 1 cut(s) 1068
BciT130I CCWGG 3 cut(s) 549, 652, 1695
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 3 cut(s) 284, 1288, 1517
BfaI CTAG 7 cut(s) 306, 513, 570, 893, 965, 1269, 1674
BfmI CTRYAG 1 cut(s) 1423
BglI GCCNNNNNGGC 1 cut(s) 741
BisI GCNGC 3 cut(s) 501, 1301, 1570
BlsI GCNGC 3 cut(s) 502, 1302, 1571
Bme1390I CCNGG 3 cut(s) 549, 652, 1695
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 158, 545, 743
BmiI GGNNCC 2 cut(s) 186, 1593
BmrFI CCNGG 3 cut(s) 549, 652, 1695
BmsI GCATC 5 cut(s) 603, 609, 681, 784, 951
BpiI GAAGAC 1 cut(s) 1022
BplI GAGNNNNNCTC 4 cut(s) 928, 960, 1268, 1300
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 723, 1610
BsaAI YACGTR 2 cut(s) 803, 1640
BsaI GGTCTC 1 cut(s) 1288
BsaJI CCNNGG 4 cut(s) 651, 1368, 1483, 1555
Bsc4I CCNNNNNNNGG 4 cut(s) 996, 1349, 1425, 1484
Bse1I ACTGG 1 cut(s) 667
Bse3DI GCAATG 3 cut(s) 946, 1125, 1572
BseBI CCWGG 3 cut(s) 549, 652, 1695
BseDI CCNNGG 4 cut(s) 651, 1368, 1483, 1555
BseGI GGATG 4 cut(s) 322, 671, 835, 1690
BseLI CCNNNNNNNGG 4 cut(s) 996, 1349, 1425, 1484
BseMI GCAATG 3 cut(s) 946, 1125, 1572
BseMII CTCAG 3 cut(s) 183, 1179, 1266
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 1 cut(s) 1128
BseSI GKGCMC 2 cut(s) 808, 1356
BseXI GCAGC 2 cut(s) 487, 1556
BseYI CCCAGC 1 cut(s) 879
BshFI GGCC 5 cut(s) 160, 396, 744, 1083, 1429
BsiHKAI GWGCWC 2 cut(s) 808, 892
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 3 cut(s) 363, 1402, 1472
BslI CCNNNNNNNGG 4 cut(s) 996, 1349, 1425, 1484
BsmAI GTCTC 3 cut(s) 284, 1288, 1517
BsmFI GGGAC 3 cut(s) 363, 1402, 1472
BsnI GGCC 5 cut(s) 160, 396, 744, 1083, 1429
Bso31I GGTCTC 1 cut(s) 1288
Bsp1286I GDGCHC 3 cut(s) 808, 892, 1356
Bsp143I GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
Bsp19I CCATGG 1 cut(s) 1368
BspACI CCGC 3 cut(s) 120, 1301, 1588
BspANI GGCC 5 cut(s) 160, 396, 744, 1083, 1429
BspCNI CTCAG 3 cut(s) 184, 1180, 1267
BspHI TCATGA 2 cut(s) 49, 763
BspLI GGNNCC 2 cut(s) 186, 1593
BspPI GGATC 4 cut(s) 949, 1380, 1586, 1599
BspQI GCTCTTC 1 cut(s) 573
BspTNI GGTCTC 1 cut(s) 1288
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 3 cut(s) 946, 1125, 1572
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 4 cut(s) 651, 1368, 1483, 1555
BssMI GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
BssNAI GTATAC 1 cut(s) 1150
BssT1I CCWWGG 2 cut(s) 1368, 1555
Bst1107I GTATAC 1 cut(s) 1150
Bst2UI CCWGG 3 cut(s) 549, 652, 1695
Bst4CI ACNGT 3 cut(s) 104, 377, 686
Bst6I CTCTTC 3 cut(s) 55, 259, 573
BstBAI YACGTR 2 cut(s) 803, 1640
BstDEI CTNAG 5 cut(s) 192, 487, 993, 1188, 1275
BstDSI CCRYGG 2 cut(s) 1368, 1483
BstF5I GGATG 4 cut(s) 322, 671, 835, 1690
BstKTI GATC 6 cut(s) 55, 944, 1255, 1326, 1375, 1594
BstMAI GTCTC 3 cut(s) 284, 1288, 1517
BstMBI GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
BstMWI GCNNNNNNNGC 3 cut(s) 283, 741, 803
BstNI CCWGG 3 cut(s) 549, 652, 1695
BstNSI RCATGY 2 cut(s) 1177, 1201
BstSCI CCNGG 3 cut(s) 547, 650, 1693
BstSFI CTRYAG 1 cut(s) 1423
BstSLI GKGCMC 2 cut(s) 808, 1356
BstV1I GCAGC 2 cut(s) 487, 1556
BstV2I GAAGAC 1 cut(s) 1022
BstX2I RGATCY 2 cut(s) 941, 1591
BstXI CCANNNNNNTGG 1 cut(s) 1490
BstYI RGATCY 2 cut(s) 941, 1591
BstZ17I GTATAC 1 cut(s) 1150
BsuRI GGCC 5 cut(s) 160, 396, 744, 1083, 1429
BtgI CCRYGG 2 cut(s) 1368, 1483
BtgZI GCGATG 1 cut(s) 1554
BtsCI GGATG 4 cut(s) 322, 671, 835, 1690
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 1 cut(s) 939
CciI TCATGA 2 cut(s) 49, 763
Cfr13I GGNCC 3 cut(s) 158, 545, 743
Csp6I GTAC 3 cut(s) 759, 984, 1633
CviQI GTAC 3 cut(s) 759, 984, 1633
DdeI CTNAG 5 cut(s) 192, 487, 993, 1188, 1275
DpnI GATC 6 cut(s) 54, 943, 1254, 1325, 1374, 1593
DpnII GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
DriI GACNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 1081
Eam1104I CTCTTC 3 cut(s) 55, 259, 573
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 3 cut(s) 55, 259, 573
Eco130I CCWWGG 2 cut(s) 1368, 1555
Eco147I AGGCCT 2 cut(s) 396, 1429
Eco31I GGTCTC 1 cut(s) 1288
Eco32I GATATC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 1665
EcoO109I RGGNCCY 1 cut(s) 743
EcoRII CCWGG 3 cut(s) 547, 650, 1693
EcoRV GATATC 1 cut(s) 438
EcoT14I CCWWGG 2 cut(s) 1368, 1555
EcoT22I ATGCAT 1 cut(s) 461
ErhI CCWWGG 2 cut(s) 1368, 1555
FaqI GGGAC 3 cut(s) 363, 1402, 1472
FauI CCCGC 1 cut(s) 1581
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 1 cut(s) 1149
Fnu4HI GCNGC 3 cut(s) 501, 1301, 1570
FokI GGATG 4 cut(s) 329, 678, 842, 1677
Fsp4HI GCNGC 3 cut(s) 501, 1301, 1570
FspBI CTAG 7 cut(s) 306, 513, 570, 893, 965, 1269, 1674
GluI GCNGC 3 cut(s) 501, 1301, 1570
GsaI CCCAGC 1 cut(s) 883
HaeIII GGCC 5 cut(s) 160, 396, 744, 1083, 1429
HapII CCGG 1 cut(s) 161
HincII GTYRAC 4 cut(s) 247, 373, 718, 730
HindII GTYRAC 4 cut(s) 247, 373, 718, 730
HinfI GANTC 6 cut(s) 36, 338, 468, 565, 647, 866
HpaI GTTAAC 2 cut(s) 247, 718
HpaII CCGG 1 cut(s) 161
HphI GGTGA 3 cut(s) 118, 127, 208
Hpy166II GTNNAC 7 cut(s) 247, 373, 718, 730, 806, 1150, 1552
Hpy188I TCNGA 3 cut(s) 349, 855, 1189
Hpy188III TCNNGA 7 cut(s) 33, 50, 314, 602, 764, 1215, 1604
Hpy8I GTNNAC 7 cut(s) 247, 373, 718, 730, 806, 1150, 1552
HpyAV CCTTC 6 cut(s) 193, 407, 607, 1375, 1605, 1640
HpyCH4III ACNGT 3 cut(s) 104, 377, 686
HpyCH4IV ACGT 2 cut(s) 802, 1639
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 741, 803
HpyF3I CTNAG 5 cut(s) 192, 487, 993, 1188, 1275
HpySE526I ACGT 2 cut(s) 802, 1639
Ksp22I TGATCA 1 cut(s) 52
KspAI GTTAAC 2 cut(s) 247, 718
Kzo9I GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 2 cut(s) 202, 1115
Lsp1109I GCAGC 2 cut(s) 487, 1556
LweI GCATC 5 cut(s) 603, 609, 681, 784, 951
MaeI CTAG 7 cut(s) 306, 513, 570, 893, 965, 1269, 1674
MaeII ACGT 2 cut(s) 802, 1639
MaeIII GTNAC 1 cut(s) 1085
MalI GATC 6 cut(s) 54, 943, 1254, 1325, 1374, 1593
MbiI CCGCTC 1 cut(s) 120
MboI GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
MflI RGATCY 2 cut(s) 941, 1591
MhlI GDGCHC 3 cut(s) 808, 892, 1356
MluCI AATT 9 cut(s) 491, 505, 532, 556, 1028, 1319, 1389, 1400, 1599
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 660, 668
Mph1103I ATGCAT 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 430
MslI CAYNNNNRTG 4 cut(s) 54, 1041, 1077, 1189
MspA1I CMGCKG 1 cut(s) 1303
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 549, 652, 1695
MvaI CCWGG 3 cut(s) 549, 652, 1695
MwoI GCNNNNNNNGC 3 cut(s) 283, 741, 803
NcoI CCATGG 1 cut(s) 1368
NdeII GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
NlaIV GGNNCC 2 cut(s) 186, 1593
NmuCI GTSAC 1 cut(s) 1085
NsiI ATGCAT 1 cut(s) 461
NspI RCATGY 2 cut(s) 1177, 1201
PagI TCATGA 2 cut(s) 49, 763
PceI AGGCCT 2 cut(s) 396, 1429
PciI ACATGT 2 cut(s) 1173, 1197
PciSI GCTCTTC 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 5 cut(s) 36, 468, 565, 647, 866
PkrI GCNGC 3 cut(s) 502, 1302, 1571
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 2 cut(s) 803, 1640
PscI ACATGT 2 cut(s) 1173, 1197
PshBI ATTAAT 1 cut(s) 1403
Psp6I CCWGG 3 cut(s) 547, 650, 1693
PspFI CCCAGC 1 cut(s) 879
PspGI CCWGG 3 cut(s) 547, 650, 1693
PspN4I GGNNCC 2 cut(s) 186, 1593
PspPI GGNCC 3 cut(s) 158, 545, 743
PsuI RGATCY 2 cut(s) 941, 1591
RsaI GTAC 3 cut(s) 760, 985, 1634
RsaNI GTAC 3 cut(s) 759, 984, 1633
RseI CAYNNNNRTG 4 cut(s) 54, 1041, 1077, 1189
SapI GCTCTTC 1 cut(s) 573
SatI GCNGC 3 cut(s) 501, 1301, 1570
Sau3AI GATC 6 cut(s) 52, 941, 1252, 1323, 1372, 1591
Sau96I GGNCC 3 cut(s) 158, 545, 743
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 549, 652, 1695
SduI GDGCHC 3 cut(s) 808, 892, 1356
SfaNI GCATC 5 cut(s) 603, 609, 681, 784, 951
SfcI CTRYAG 1 cut(s) 1423
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 4 cut(s) 54, 1041, 1077, 1189
SmlI CTYRAG 2 cut(s) 738, 1625
SmoI CTYRAG 2 cut(s) 738, 1625
Sse9I AATT 9 cut(s) 491, 505, 532, 556, 1028, 1319, 1389, 1400, 1599
SseBI AGGCCT 2 cut(s) 396, 1429
SsiI CCGC 3 cut(s) 120, 1301, 1588
SspI AATATT 3 cut(s) 46, 1465, 1520
SspMI CTAG 7 cut(s) 306, 513, 570, 893, 965, 1269, 1674
StuI AGGCCT 2 cut(s) 396, 1429
StyD4I CCNGG 3 cut(s) 547, 650, 1693
StyI CCWWGG 2 cut(s) 1368, 1555
TaaI ACNGT 3 cut(s) 104, 377, 686
TaiI ACGT 2 cut(s) 805, 1642
TaqI TCGA 4 cut(s) 34, 434, 792, 1214
TasI AATT 9 cut(s) 491, 505, 532, 556, 1028, 1319, 1389, 1400, 1599
TatI WGTACW 2 cut(s) 758, 1632
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 5 cut(s) 36, 468, 565, 647, 866
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 1 cut(s) 1085
TseI GCWGC 2 cut(s) 500, 1569
Tsp45I GTSAC 1 cut(s) 1085
TspDTI ATGAA 9 cut(s) 17, 38, 458, 492, 621, 711, 762, 1021, 1059
TspRI CASTG 1 cut(s) 939
VneI GTGCAC 1 cut(s) 804
VpaK11BI GGWCC 1 cut(s) 545
VspI ATTAAT 1 cut(s) 1403
XapI RAATTY 4 cut(s) 491, 505, 532, 1028
XceI RCATGY 2 cut(s) 1177, 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 1149
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 7 cut(s) 306, 513, 570, 893, 965, 1269, 1674
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.