FvH4_6g36422

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28654558 .. 28655174
617 bp
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UTR
Exon/CDS
Intron
FvH4_6g36422.t1

Sequence Viewer

Length: 354 bp
ATGTGCTGCATTGCACAAATGGTGCGAGCTCCTTCAATTCAAGATGTAATAAACACTCAACTCAAGGAGTATGTACGTGTTGAAGGTAGTTTCAAGGAAGGGAGTTCTATTGGCCAAAGAAACACTCCTCCAGCTATGTGGTGGTCTTCTTATGGAAAACAATGTCCTGAATTGCAGAGATTTGCCATTAGAATTTTGAGCCAGAACTGTGATGGTGCTTCAAGATATGGACTCAAAAGGACTCTAGCTGAGAAGCTGACTGCCATTGATGCTGAAGATATTGTATTCCAGAATGGTGATGTGAAGATGGAGCTTGCTAATGTGGCTACCAGTGAAGGAGTTTCAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

7.62

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009746)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 75
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 6 cut(s) 36, 41, 83, 94, 222, 345
AluBI AGCT 5 cut(s) 29, 134, 248, 256, 313
AluI AGCT 5 cut(s) 29, 134, 248, 256, 313
Alw21I GWGCWC 1 cut(s) 31
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 308
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 2 cut(s) 206, 301
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmsI GCATC 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 9
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 31
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 31
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 9
BsrI ACTGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 209
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 27, 315
BstDEI CTNAG 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 269, 323
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 27, 315
Csp6I GTAC 1 cut(s) 74
CviJI RGCY 8 cut(s) 29, 114, 134, 201, 248, 256, 313, 326
CviKI_1 RGCY 8 cut(s) 29, 114, 134, 201, 248, 256, 313, 326
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaiI YATR 4 cut(s) 72, 137, 153, 228
Fnu4HI GCNGC 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 114
HinfI GANTC 2 cut(s) 231, 241
HphI GGTGA 1 cut(s) 308
Hpy188III TCNNGA 5 cut(s) 41, 167, 222, 289, 345
HpyAV CCTTC 4 cut(s) 42, 77, 92, 329
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 9, 14, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 323
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 76
LmnI GCTCC 2 cut(s) 34, 310
LpnPI CCDG 5 cut(s) 144, 180, 215, 302, 343
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 76
MboII GAAGA 3 cut(s) 138, 287, 316
MhlI GDGCHC 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 3 cut(s) 36, 170, 192
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 2 cut(s) 225, 235
MnlI CCTC 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 269, 323
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 2 cut(s) 225, 235
PpsI GAGTC 2 cut(s) 225, 235
Ppu21I YACGTR 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 31
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SacI GAGCTC 1 cut(s) 31
SatI GCNGC 1 cut(s) 7
SchI GAGTC 2 cut(s) 225, 235
SduI GDGCHC 1 cut(s) 31
SetI ASST 7 cut(s) 31, 79, 88, 136, 250, 258, 315
SfaNI GCATC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 36, 170, 192
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 31
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 79
TasI AATT 3 cut(s) 36, 170, 192
TscAI CASTG 1 cut(s) 337
TseI GCWGC 1 cut(s) 6
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 209
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.