AT3G13040
MYB Family

MYB-CC type transfactor, LHEQLE motif

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4172137 .. 4175457
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13040.2

Sequence Viewer

Length: 1350 bp
ATGTACATCAAAGCAATCATGAACAGACACAGGCTTCTCTCAGCGGCAACAGATGAATGCAATAAAAAACTTGGTCAAGCTTGCTCTTCTTCTTTATCTCCAGTCCATAACTTTCTGAATGTCCAGCCAGAACACCGGAAAACTCCTTTCATAAGGTCACAATCTCCAGATTCACCTGGTCAGCTATGGCCAAAGAATAGTTCTCAGAGCACCTTCTCTCGGTCTTCCACCTTTTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAGAAACATCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGGTGTGGAGTCTGCAAGATCTCCATCTATTTTCACTGAGGATTTGGGCAATCAATGTGATGGAGGCAACTCCGGGTCGCTTCTCAAAGACTTCCTTAATCTTTCTGGAGATGCTTGTTCCGATGGCGATTTTCATGATTTTGGCTGTTCGAATGACAGCTATTGCTTATCAGATCAAATGGAATTACAGTTCCTGTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACTCCCAGGCTTGATGAGATCTATGAAACGCCATTGGCGTCAAATCCAGTGACGAGATTGAGTCCAAGCCAAAGCTGTGTTCCTGGAGCAATGTCTGTAGACGTAGTTTCATCTCACCCTTCTCCGGGATCAGCAGCCAATCAAAAGTCGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTTTGTAAAGGCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTAAGAAGCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAAAAAAGAAGAGAAAAGGACTGATAACTCAGAAGAAAAGAAACTGGCTTTGAGTAAGAGTGAAGCTGACGAGAAGAAGAAAGGGGCCATACAATTAACTGAAGCACTGCGTATGCAGATGGAAGTTCAGAAGCAATTGCATGAACAGCTGGAGGTGCAACGGGTGCTTCAGCTACGAATTGAAGAGCATGCTAAATACTTGGAAAAGATGTTGGAAGAACAACGCAAAACAGGAAGGTGGATTTCTTCTTCTTCGCAGACAGTGTTATCACCTAGTGATGACTCTATACCAGATTCTCAAAACATGTCCAAAACCAAAGCATCTTCGCCTCAGCCGCCATTACCTGCAGAGAACAAAGCGTCGGAAACCGAAGACGATAAATGTGAAAGCCCTCAGAAACGTCGCAGGCTTGAGAACATAGCTGAATCTGAAGATCCTAAGAGGTAG

Protein Analysis

449

Amino Acids

50.11

Weight (kDa)

6.22

Isoelectric Point (pI)

73.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 243 - 294 2.2e-08 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 331 - 378 9.7e-22 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1255
AccI GTMKAC 1 cut(s) 675
AccII CGCG 1 cut(s) 570
AciI CCGC 4 cut(s) 44, 568, 770, 1238
AclWI GGATC 3 cut(s) 308, 712, 1331
AcoI YGGCCR 1 cut(s) 188
AcuI CTGAAG 2 cut(s) 1023, 1055
AcyI GRCGYC 1 cut(s) 614
AdeI CACNNNGTG 1 cut(s) 1178
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 219, 700, 701
AflIII ACRYGT 1 cut(s) 1206
AgsI TTSAA 3 cut(s) 264, 785, 1085
AjnI CCWGG 3 cut(s) 175, 581, 658
AjuI GAANNNNNNNTTGG 4 cut(s) 184, 216, 639, 671
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
Alw21I GWGCWC 2 cut(s) 212, 750
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 3 cut(s) 308, 712, 1331
AlwNI CAGNNNCTG 2 cut(s) 341, 535
AoxI GGCC 4 cut(s) 188, 788, 798, 987
ApeKI GCWGC 1 cut(s) 710
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 788, 987
AsuC2I CCSGG 2 cut(s) 415, 702
AsuHPI GGTGA 4 cut(s) 165, 683, 784, 1164
AsuII TTCGAA 1 cut(s) 491
BalI TGGCCA 1 cut(s) 190
BanII GRGCYC 1 cut(s) 750
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 3 cut(s) 216, 290, 1281
Bbv12I GWGCWC 2 cut(s) 212, 750
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 1 cut(s) 722
BccI CCATC 5 cut(s) 373, 395, 458, 729, 1015
BciT130I CCWGG 3 cut(s) 177, 583, 660
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 2 cut(s) 415, 702
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 3 cut(s) 287, 884, 1176
BfmI CTRYAG 2 cut(s) 672, 1248
BfuAI ACCTGC 1 cut(s) 1255
BglII AGATCT 2 cut(s) 359, 594
BisI GCNGC 3 cut(s) 45, 711, 1238
BlsI GCNGC 3 cut(s) 46, 712, 1239
Bme1390I CCNGG 5 cut(s) 177, 415, 583, 660, 702
BmgT120I GGNCC 2 cut(s) 788, 987
BmiI GGNNCC 1 cut(s) 988
BmrFI CCNGG 5 cut(s) 177, 415, 583, 660, 702
BmsI GCATC 2 cut(s) 442, 1232
BpiI GAAGAC 3 cut(s) 216, 290, 1281
BplI GAGNNNNNCTC 2 cut(s) 724, 756
BpmI CTGGAG 5 cut(s) 84, 150, 468, 681, 1073
Bpu10I CCTNAGC 2 cut(s) 744, 1233
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 569, 1334
BpuMI CCSGG 2 cut(s) 415, 702
BsaBI GATNNNNATC 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 700, 701
Bse1I ACTGG 3 cut(s) 101, 623, 951
Bse3DI GCAATG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 364
BseBI CCWGG 3 cut(s) 177, 583, 660
BseDI CCNNGG 1 cut(s) 581
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 3 cut(s) 219, 700, 701
BseMI GCAATG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 101, 623, 951
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 722
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 4 cut(s) 190, 790, 800, 989
BsiHKAI GWGCWC 2 cut(s) 212, 750
BsiSI CCGG 3 cut(s) 136, 414, 701
BslI CCNNNNNNNGG 3 cut(s) 219, 700, 701
BsmAI GTCTC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 4 cut(s) 190, 790, 800, 989
Bsp119I TTCGAA 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 212, 750
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
BspACI CCGC 4 cut(s) 44, 568, 770, 1238
BspANI GGCC 4 cut(s) 190, 790, 800, 989
BspFNI CGCG 1 cut(s) 570
BspHI TCATGA 3 cut(s) 18, 475, 825
BspLI GGNNCC 1 cut(s) 988
BspMAI CTGCAG 1 cut(s) 1252
BspMI ACCTGC 1 cut(s) 1255
BspPI GGATC 3 cut(s) 308, 712, 1331
BspQI GCTCTTC 2 cut(s) 91, 1080
BspT104I TTCGAA 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 672
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 101, 623, 951
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
BssNI GRCGYC 1 cut(s) 614
BssSI CACGAG 1 cut(s) 752
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 3 cut(s) 177, 583, 660
Bst4CI ACNGT 3 cut(s) 296, 531, 1165
Bst6I CTCTTC 3 cut(s) 91, 906, 1080
BstACI GRCGYC 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 1066
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 82, 555, 1092, 1310
BstFNI CGCG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 8 cut(s) 316, 362, 517, 597, 707, 777, 849, 1339
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
BstMWI GCNNNNNNNGC 4 cut(s) 1048, 1057, 1066, 1237
BstNI CCWGG 3 cut(s) 177, 583, 660
BstNSI RCATGY 2 cut(s) 1094, 1210
BstSCI CCNGG 5 cut(s) 175, 413, 581, 658, 700
BstSFI CTRYAG 2 cut(s) 672, 1248
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 722
BstV2I GAAGAC 3 cut(s) 216, 290, 1281
BstX2I RGATCY 3 cut(s) 359, 594, 1336
BstYI RGATCY 3 cut(s) 359, 594, 1336
BsuRI GGCC 4 cut(s) 190, 790, 800, 989
BtsI GCAGTG 1 cut(s) 1007
BtsIMutI CAGTG 4 cut(s) 375, 630, 1007, 1170
BveI ACCTGC 1 cut(s) 1255
Cac8I GCNNGC 4 cut(s) 82, 555, 1092, 1310
CaiI CAGNNNCTG 2 cut(s) 341, 535
CciI TCATGA 3 cut(s) 18, 475, 825
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 788, 987
CseI GACGC 2 cut(s) 603, 1251
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 1 cut(s) 4
CviAII CATG 7 cut(s) 19, 476, 826, 854, 1043, 1091, 1207
CviQI GTAC 1 cut(s) 4
DpnI GATC 8 cut(s) 315, 361, 516, 596, 706, 776, 848, 1338
DpnII GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
DraIII CACNNNGTG 1 cut(s) 1178
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 3 cut(s) 91, 906, 1080
EarI CTCTTC 3 cut(s) 91, 906, 1080
Ecl136II GAGCTC 1 cut(s) 748
Eco24I GRGCYC 1 cut(s) 750
Eco53kI GAGCTC 1 cut(s) 748
Eco57I CTGAAG 2 cut(s) 1023, 1055
EcoICRI GAGCTC 1 cut(s) 748
EcoO109I RGGNCCY 1 cut(s) 788
EcoRII CCWGG 3 cut(s) 175, 581, 658
EcoT38I GRGCYC 1 cut(s) 750
FaeI CATG 7 cut(s) 22, 479, 829, 857, 1046, 1094, 1210
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 7 cut(s) 18, 475, 825, 853, 1042, 1090, 1206
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 45, 711, 1238
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 3 cut(s) 45, 711, 1238
FspBI CTAG 3 cut(s) 287, 884, 1176
GlaI GCGC 1 cut(s) 571
GluI GCNGC 3 cut(s) 45, 711, 1238
GsuI CTGGAG 5 cut(s) 84, 150, 468, 681, 1073
HaeIII GGCC 4 cut(s) 190, 790, 800, 989
HapII CCGG 3 cut(s) 136, 414, 701
HgaI GACGC 2 cut(s) 603, 1251
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 7 cut(s) 22, 479, 829, 857, 1046, 1094, 1210
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 9 cut(s) 170, 274, 350, 637, 739, 755, 1184, 1196, 1328
HpaII CCGG 3 cut(s) 136, 414, 701
HphI GGTGA 4 cut(s) 165, 683, 784, 1164
Hpy166II GTNNAC 1 cut(s) 676
Hpy188III TCNNGA 7 cut(s) 19, 167, 447, 476, 726, 743, 826
Hpy8I GTNNAC 1 cut(s) 676
Hpy99I CGWCG 2 cut(s) 1267, 1308
HpyAV CCTTC 4 cut(s) 223, 705, 779, 1131
HpyCH4III ACNGT 3 cut(s) 296, 531, 1165
HpyCH4IV ACGT 2 cut(s) 678, 1303
HpyCH4V TGCA 8 cut(s) 60, 237, 356, 871, 1018, 1042, 1060, 1250
HpyF10VI GCNNNNNNNGC 4 cut(s) 1048, 1057, 1066, 1237
HpySE526I ACGT 2 cut(s) 678, 1303
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 7 cut(s) 22, 479, 829, 857, 1046, 1094, 1210
HspAI GCGC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
LguI GCTCTTC 2 cut(s) 91, 1080
LmnI GCTCC 2 cut(s) 662, 753
Lsp1109I GCAGC 1 cut(s) 722
LweI GCATC 2 cut(s) 442, 1232
MabI ACCWGGT 1 cut(s) 175
MaeI CTAG 3 cut(s) 287, 884, 1176
MaeII ACGT 2 cut(s) 678, 1303
MaeIII GTNAC 2 cut(s) 156, 625
MalI GATC 8 cut(s) 315, 361, 516, 596, 706, 776, 848, 1338
MboI GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
MfeI CAATTG 1 cut(s) 1037
MflI RGATCY 3 cut(s) 359, 594, 1336
MhlI GDGCHC 2 cut(s) 212, 750
MlsI TGGCCA 1 cut(s) 190
MluCI AATT 4 cut(s) 524, 995, 1037, 1080
MluNI TGGCCA 1 cut(s) 190
MlyI GAGTC 6 cut(s) 268, 359, 646, 733, 764, 1178
MmeI TCCRAC 2 cut(s) 1095, 1245
Mox20I TGGCCA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 190
MseI TTAA 3 cut(s) 438, 816, 998
Msp20I TGGCCA 1 cut(s) 190
MspA1I CMGCKG 2 cut(s) 44, 1051
MspI CCGG 3 cut(s) 136, 414, 701
MspR9I CCNGG 5 cut(s) 177, 415, 583, 660, 702
MunI CAATTG 1 cut(s) 1037
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 3 cut(s) 177, 583, 660
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 1048, 1057, 1066, 1237
NciI CCSGG 2 cut(s) 415, 702
NdeII GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
NlaIII CATG 7 cut(s) 22, 479, 829, 857, 1046, 1094, 1210
NlaIV GGNNCC 1 cut(s) 988
NmuCI GTSAC 2 cut(s) 156, 625
NspI RCATGY 2 cut(s) 1094, 1210
NspV TTCGAA 1 cut(s) 491
PaeI GCATGC 1 cut(s) 1094
PagI TCATGA 3 cut(s) 18, 475, 825
PciI ACATGT 1 cut(s) 1206
PciSI GCTCTTC 2 cut(s) 91, 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 3 cut(s) 170, 1196, 1328
PfoI TCCNGGA 2 cut(s) 658, 700
PkrI GCNGC 3 cut(s) 46, 712, 1239
PleI GAGTC 6 cut(s) 268, 358, 645, 733, 763, 1178
PpsI GAGTC 6 cut(s) 268, 358, 645, 733, 763, 1178
PscI ACATGT 1 cut(s) 1206
Psp124BI GAGCTC 1 cut(s) 750
Psp6I CCWGG 3 cut(s) 175, 581, 658
PspGI CCWGG 3 cut(s) 175, 581, 658
PspN4I GGNNCC 1 cut(s) 988
PspPI GGNCC 2 cut(s) 788, 987
PstI CTGCAG 1 cut(s) 1252
PstNI CAGNNNCTG 2 cut(s) 341, 535
PsuI RGATCY 3 cut(s) 359, 594, 1336
PvuII CAGCTG 1 cut(s) 1051
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 750
SapI GCTCTTC 2 cut(s) 91, 1080
SaqAI TTAA 3 cut(s) 438, 816, 998
SatI GCNGC 3 cut(s) 45, 711, 1238
Sau3AI GATC 8 cut(s) 313, 359, 514, 594, 704, 774, 846, 1336
Sau96I GGNCC 2 cut(s) 788, 987
SchI GAGTC 6 cut(s) 268, 359, 646, 733, 764, 1178
ScrFI CCNGG 5 cut(s) 177, 415, 583, 660, 702
SduI GDGCHC 2 cut(s) 212, 750
SexAI ACCWGGT 1 cut(s) 175
SfaNI GCATC 2 cut(s) 442, 1232
SfcI CTRYAG 2 cut(s) 672, 1248
SfuI TTCGAA 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 548, 1313
SmoI CTYRAG 2 cut(s) 548, 1313
SphI GCATGC 1 cut(s) 1094
Sse9I AATT 4 cut(s) 524, 995, 1037, 1080
SsiI CCGC 4 cut(s) 44, 568, 770, 1238
SspMI CTAG 3 cut(s) 287, 884, 1176
SstI GAGCTC 1 cut(s) 750
StyD4I CCNGG 5 cut(s) 175, 413, 581, 658, 700
TaaI ACNGT 3 cut(s) 296, 531, 1165
TaiI ACGT 2 cut(s) 681, 1306
TaqI TCGA 2 cut(s) 491, 725
TaqII GACCGA 1 cut(s) 210
TasI AATT 4 cut(s) 524, 995, 1037, 1080
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 47, 1240
TfiI GAWTC 3 cut(s) 170, 1196, 1328
Tru1I TTAA 3 cut(s) 438, 816, 998
Tru9I TTAA 3 cut(s) 438, 816, 998
TscAI CASTG 4 cut(s) 382, 630, 1014, 1170
TseFI GTSAC 2 cut(s) 156, 625
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 2 cut(s) 156, 625
TspDTI ATGAA 9 cut(s) 35, 69, 139, 464, 558, 615, 675, 842, 1059
TspRI CASTG 4 cut(s) 382, 630, 1014, 1170
XceI RCATGY 2 cut(s) 1094, 1210
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 3 cut(s) 287, 884, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.