Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004098

Physical Location & Seq

Genomic Coordinates Forward (+)

20206926 .. 20209634

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAGTCACCATGGAGTCAGTTCTGTATCACAAAGTCAGACTACCAAAGGAATCACAGAGTCATACTGTACATCCCTATCCCCAGTACATGATTTTTTGGGTTGTGAATCAGAAGGCAGGAGTTCAGTGGCCCGTGAATGTTCATCAGCACGCCTCTCACCTTTCATACGGACAGAATCTTTTAGCTCTCCTACTAATGTGCGAGAATCTAGTCTTCAACATTCCAAGAGCACATTTTCACGTTCTTCTGTTTTTTGTACAAGTTTGTATCAGTCATCTTCATCGAGTTCTGAACGGCAGCTTGGAAATCTGCCATTTCTTCCCCACCCTCGAACATACAGGCAGTCCATTTCTGCTGTTGATTCAAAATATCCAATGCTTTTAAGTGAGGATATGAGCAATCAATATGATGATGAACAATCAGAGTATCTCATGAAAGACTTTCTTAATTTGACTGGAGATGCTTCTGATGGTAGCTTCCATGGAATTGGCTGTGGAAGTGACACTATAGCACTTACAGATCAATTGGAGTTTCAGTTTTTGTCAGATCAACTTGACATAGCTATCACAGACAATGGAGAAAATCCCCAGCTTGATCACCACCTGTTGATGCTCTTTCAAGTCACCCCCTCTCCTGGGCCTTCATCTGCACATAGACCAAGAATGCGATGGACGCCTGAGCTCCATGAGCGTTTTGTAGAGGCTGTAAAGAAGCTTGATGGGGCTGAAAAGGCTACTCCAAAAGGCGTTTTAAAGGTTATGAATGTTGAGGGCTTAACCATCTATCATGTGAAAAGCCACTTGCAGAAGTACCGACTTGCCAAGTATATGCCCGAGAAAAAGGAAGATAAGAAGGCCTCTAGCTCTGAAGAAAAGAAAGCAGCTGCAAGCGGATTGGAAAGCGATGGACGAAGAAAAGGGAGCTTCCATATCACTGAGGCTCTCCGCATGCAAATGGAAGTTCAGAAACAACTGCATGAGCAGCTTGAGGTTCAAAGGTCTCTTCAGCTACGCATAGAGGAGCATGCAAAGTACTTGGAGAAGATCTTGGAGGAACAACAGAAAGCTGGTAGTGCGTTACTTTCTCCACAAGCCTTGTCGTCACTGACTACTAATTCCATTAAAGACCCTGAACAGCATCCTTCCCCATCAGCTGGTGTATCACCTTCACAACCAGCTGAGTCTGACTCATTATCACCTCTGTCACTGAAGCACAAAGCTGCTGACTGTAGTGACTCTGAGGCACAAGCATGCACTAAAAAGCTTCGCATTGAAGAAAAACCAGATGAGCCTGTAGTTGAAAATCTCTCGGCAACAGTAACTACTACTACTACTTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

447

Amino Acids

49.44

Weight (kDa)

5.89

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	221 - 272	7e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	310 - 356	3.1e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13040 AT3G13040 AT3G13040
fragaria_vesca	FvH4_6g36430 FvH4_6g36430 FvH4_6g36430
malus_domestica	MD09G1169000.v1.1 MD17G1157800.v1.1
prunus_persica	Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1
pyrus_communis	pycom09g08660 pycom17g15110
rosa_chinensis	RchiOBHm_Chr2g0148421
rosa_laevigata	RLG00000020349
rosa_multiflora	Rmu_co8500471.1_g000001 Rmu_sc0007332.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098750
rosa_rugosa	Rorug02G0406900 Rorug02G0407000
rosa_samantha	Rh2AG465600 Rh2BG478800 Rh2CG452100 Rh2DG487600
rosa_wichuraiana	Rw2G037950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1154
AciI	CCGC	2 cut(s)	891, 946
AcuI	CTGAAG	3 cut(s)	888, 989, 1229
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	5 cut(s)	70, 87, 259, 812, 1034
AfiI	CCNNNNNNNGG	3 cut(s)	635, 636, 1154
AgsI	TTSAA	6 cut(s)	218, 366, 620, 995, 1274, 1301
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
Alw21I	GWGCWC	2 cut(s)	233, 684
Alw26I	GTCTC	1 cut(s)	1005
Ama87I	CYCGRG	1 cut(s)	833
AoxI	GGCC	3 cut(s)	129, 638, 855
ApeKI	GCWGC	5 cut(s)	298, 881, 884, 982, 1220
AspS9I	GGNCC	2 cut(s)	130, 638
AsuHPI	GGTGA	5 cut(s)	150, 590, 616, 1155, 1188
AvaI	CYCGRG	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	233, 684
BbvI	GCAGC	5 cut(s)	310, 871, 893, 994, 1207
BccI	CCATC	6 cut(s)	464, 663, 713, 788, 899, 1156
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	1005
BfaI	CTAG	2 cut(s)	210, 861
BfmI	CTRYAG	3 cut(s)	507, 1228, 1293
BglII	AGATCT	1 cut(s)	1044
BisI	GCNGC	5 cut(s)	299, 882, 885, 983, 1221
BlsI	GCNGC	5 cut(s)	300, 883, 886, 984, 1222
BmcAI	AGTACT	1 cut(s)	1034
Bme1390I	CCNGG	1 cut(s)	636
BmeT110I	CYCGRG	1 cut(s)	833
BmgT120I	GGNCC	2 cut(s)	130, 638
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	3 cut(s)	451, 600, 1147
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	1172, 1204
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	1007
BsaHI	GRCGYC	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	3 cut(s)	10, 481, 635
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 551, 616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 636, 1154
Bse1I	ACTGG	2 cut(s)	83, 460
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	10, 481, 635
BseGI	GGATG	2 cut(s)	71, 1138
BseLI	CCNNNNNNNGG	3 cut(s)	635, 636, 1154
BseMII	CTCAG	4 cut(s)	669, 927, 1170, 1230
BseNI	ACTGG	2 cut(s)	83, 460
BseRI	GAGGAG	1 cut(s)	1034
BseXI	GCAGC	5 cut(s)	310, 871, 893, 994, 1207
BseYI	CCCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	131, 640, 857
BsiHKAI	GWGCWC	2 cut(s)	233, 684
BsiHKCI	CYCGRG	1 cut(s)	833
BslI	CCNNNNNNNGG	3 cut(s)	635, 636, 1154
BsmAI	GTCTC	1 cut(s)	1005
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	131, 640, 857
Bso31I	GGTCTC	1 cut(s)	1005
BsoBI	CYCGRG	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	233, 684
Bsp1407I	TGTACA	2 cut(s)	68, 257
Bsp143I	GATC	4 cut(s)	520, 547, 595, 1044
Bsp19I	CCATGG	2 cut(s)	10, 481
BspACI	CCGC	2 cut(s)	891, 946
BspANI	GGCC	3 cut(s)	131, 640, 857
BspCNI	CTCAG	4 cut(s)	670, 928, 1171, 1231
BspHI	TCATGA	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	1005
BsrGI	TGTACA	2 cut(s)	68, 257
BsrI	ACTGG	2 cut(s)	83, 460
BssECI	CCNNGG	3 cut(s)	10, 481, 635
BssMI	GATC	4 cut(s)	520, 547, 595, 1044
BssNI	GRCGYC	1 cut(s)	674
BssT1I	CCWWGG	2 cut(s)	10, 481
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	3 cut(s)	68, 1229, 1318
Bst6I	CTCTTC	1 cut(s)	1008
BstACI	GRCGYC	1 cut(s)	674
BstAUI	TGTACA	2 cut(s)	68, 257
BstC8I	GCNNGC	5 cut(s)	151, 889, 950, 1026, 1252
BstDEI	CTNAG	4 cut(s)	678, 936, 1179, 1239
BstDSI	CCRYGG	2 cut(s)	10, 481
BstF5I	GGATG	2 cut(s)	71, 1138
BstKTI	GATC	4 cut(s)	523, 550, 598, 1047
BstMAI	GTCTC	1 cut(s)	1005
BstMBI	GATC	4 cut(s)	520, 547, 595, 1044
BstMWI	GCNNNNNNNGC	5 cut(s)	673, 688, 731, 982, 1073
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	3 cut(s)	952, 1028, 1254
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	3 cut(s)	507, 1228, 1293
BstV1I	GCAGC	5 cut(s)	310, 871, 893, 994, 1207
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	1044
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	1044
BsuRI	GGCC	3 cut(s)	131, 640, 857
BtgI	CCRYGG	2 cut(s)	10, 481
BtgZI	GCGATG	2 cut(s)	682, 918
BtsCI	GGATG	2 cut(s)	71, 1138
BtsIMutI	CAGTG	4 cut(s)	132, 933, 1103, 1205
Cac8I	GCNNGC	5 cut(s)	151, 889, 950, 1026, 1252
CciI	TCATGA	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	130, 638
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	5 cut(s)	69, 86, 258, 811, 1033
CspCI	CAANNNNNGTGG	2 cut(s)	1077, 1112
CviQI	GTAC	5 cut(s)	69, 86, 258, 811, 1033
DdeI	CTNAG	4 cut(s)	678, 936, 1179, 1239
DpnI	GATC	4 cut(s)	522, 549, 597, 1046
DpnII	GATC	4 cut(s)	520, 547, 595, 1044
DraI	TTTAAA	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	1008
EarI	CTCTTC	1 cut(s)	1008
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	2 cut(s)	10, 481
Eco147I	AGGCCT	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	1005
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	3 cut(s)	888, 989, 1229
Eco88I	CYCGRG	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	10, 481
EcoT38I	GRGCYC	1 cut(s)	684
ErhI	CCWWGG	2 cut(s)	10, 481
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	299, 882, 885, 983, 1221
FokI	GGATG	2 cut(s)	58, 1125
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	5 cut(s)	299, 882, 885, 983, 1221
FspBI	CTAG	2 cut(s)	210, 861
GluI	GCNGC	5 cut(s)	299, 882, 885, 983, 1221
GsaI	CCCAGC	1 cut(s)	592
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	131, 640, 857
HgaI	GACGC	1 cut(s)	682
Hin1I	GRCGYC	1 cut(s)	674
HindIII	AAGCTT	2 cut(s)	713, 1262
HphI	GGTGA	5 cut(s)	150, 590, 616, 1155, 1188
Hpy188III	TCNNGA	1 cut(s)	433
HpyAV	CCTTC	5 cut(s)	107, 651, 847, 1152, 1176
HpyCH4III	ACNGT	3 cut(s)	68, 1229, 1318
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	7 cut(s)	650, 805, 887, 952, 976, 1028, 1254
HpyF10VI	GCNNNNNNNGC	5 cut(s)	673, 688, 731, 982, 1073
HpyF3I	CTNAG	4 cut(s)	678, 936, 1179, 1239
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	674
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	520, 547, 595, 1044
LmnI	GCTCC	3 cut(s)	687, 921, 1021
Lsp1109I	GCAGC	5 cut(s)	310, 871, 893, 994, 1207
LweI	GCATC	3 cut(s)	451, 600, 1147
MaeI	CTAG	2 cut(s)	210, 861
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	8 cut(s)	5, 500, 622, 1077, 1101, 1203, 1232, 1318
MalI	GATC	4 cut(s)	522, 549, 597, 1046
MboI	GATC	4 cut(s)	520, 547, 595, 1044
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	1 cut(s)	1044
MhlI	GDGCHC	2 cut(s)	233, 684
MluCI	AATT	4 cut(s)	448, 486, 524, 1114
MlyI	GAGTC	6 cut(s)	13, 24, 68, 1181, 1190, 1229
MseI	TTAA	5 cut(s)	383, 447, 752, 776, 1122
MslI	CAYNNNNRTG	2 cut(s)	953, 1249
MspA1I	CMGCKG	3 cut(s)	884, 1154, 1178
MspR9I	CCNGG	1 cut(s)	636
MunI	CAATTG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	5 cut(s)	673, 688, 731, 982, 1073
NcoI	CCATGG	2 cut(s)	10, 481
NdeII	GATC	4 cut(s)	520, 547, 595, 1044
NmeAIII	GCCGAG	1 cut(s)	1289
NmuCI	GTSAC	6 cut(s)	5, 500, 622, 1101, 1203, 1232
NspI	RCATGY	3 cut(s)	952, 1028, 1254
PaeI	GCATGC	3 cut(s)	952, 1028, 1254
PagI	TCATGA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	857
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	5 cut(s)	51, 107, 176, 206, 362
PflMI	CCANNNNNTGG	1 cut(s)	1154
PkrI	GCNGC	5 cut(s)	300, 883, 886, 984, 1222
PleI	GAGTC	6 cut(s)	12, 23, 67, 1181, 1189, 1229
PpsI	GAGTC	6 cut(s)	12, 23, 67, 1181, 1189, 1229
Psp124BI	GAGCTC	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	634
PspPI	GGNCC	2 cut(s)	130, 638
PsuI	RGATCY	1 cut(s)	1044
PvuII	CAGCTG	3 cut(s)	884, 1154, 1178
RsaI	GTAC	5 cut(s)	70, 87, 259, 812, 1034
RsaNI	GTAC	5 cut(s)	69, 86, 258, 811, 1033
RseI	CAYNNNNRTG	2 cut(s)	953, 1249
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	5 cut(s)	383, 447, 752, 776, 1122
SatI	GCNGC	5 cut(s)	299, 882, 885, 983, 1221
Sau3AI	GATC	4 cut(s)	520, 547, 595, 1044
Sau96I	GGNCC	2 cut(s)	130, 638
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	6 cut(s)	13, 24, 68, 1181, 1190, 1229
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	233, 684
SfaNI	GCATC	3 cut(s)	451, 600, 1147
SfcI	CTRYAG	3 cut(s)	507, 1228, 1293
SmiMI	CAYNNNNRTG	2 cut(s)	953, 1249
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
SphI	GCATGC	3 cut(s)	952, 1028, 1254
Sse9I	AATT	4 cut(s)	448, 486, 524, 1114
SseBI	AGGCCT	1 cut(s)	857
SsiI	CCGC	2 cut(s)	891, 946
SspMI	CTAG	2 cut(s)	210, 861
SstI	GAGCTC	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	2 cut(s)	10, 481
TaaI	ACNGT	3 cut(s)	68, 1229, 1318
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	284, 331
TasI	AATT	4 cut(s)	448, 486, 524, 1114
TatI	WGTACW	4 cut(s)	68, 85, 257, 1032
TfiI	GAWTC	5 cut(s)	51, 107, 176, 206, 362
Tru1I	TTAA	5 cut(s)	383, 447, 752, 776, 1122
Tru9I	TTAA	5 cut(s)	383, 447, 752, 776, 1122
TscAI	CASTG	4 cut(s)	132, 940, 1110, 1212
TseFI	GTSAC	6 cut(s)	5, 500, 622, 1101, 1203, 1232
TseI	GCWGC	5 cut(s)	298, 881, 884, 982, 1220
Tsp45I	GTSAC	6 cut(s)	5, 500, 622, 1101, 1203, 1232
TspDTI	ATGAA	7 cut(s)	132, 154, 270, 429, 449, 633, 776
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	4 cut(s)	132, 940, 1110, 1212
Van91I	CCANNNNNTGG	1 cut(s)	1154
XceI	RCATGY	3 cut(s)	952, 1028, 1254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	666
XspI	CTAG	2 cut(s)	210, 861
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.