Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8500471.1

Orthogroup ID

OG0004098

Physical Location & Seq

Genomic Coordinates Reverse (-)

203 .. 1402

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8500471.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgaaggtagggctttcacatgtaatcatgagtcaccatggagtcagttctgtatcacaaagtcagactaccaaaggaatcacagagtcatactgtacatccctatccccagtacatgattttttgggttgtgaatcagaaggcaggagttcagtggcccgtgaatgttcatcagcacgcctctcacctttcatacggacagaatcttttagccctcctactaatgtgcgagaatctagtcttcaacattccaagagcacattttcacgttcttctgttttttgtacaagtttgtatcagtcatcttcatcgagttctgaacggcagcttggaaatctgccatttcttccccaccctccaatatacagccagtccatttctgctgttgattcaaaatatccaatgcttttaagtgaggatgtgagcaatcaatatgatgatgaacaatcagattatctcatgaaggactttcttaatttgactggagatgcttctgatgatagcttccatggaattggccgtggaggtgacactatagcacttacagatcaattggagtttcagtttttgtcagatcaacttgacatagctatcacagacaatggagaaaatccccggcttgatgaaatatatgaaattcctcaagcctcatcgaaaccagccatagaattaacatgtagtaagagttgtggctcgacagcaccacctgttgatgctctttcaagtcacccctctcctgggccttcatctgcacatagaccaagaatgcgatggacgcctgagctccatgagcgttttgtagaggctgtaaagaagcttgatggggctgaaagtaaatactacaatttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

283

Amino Acids

31.05

Weight (kDa)

5.15

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13040 AT3G13040 AT3G13040
fragaria_vesca	FvH4_6g36430 FvH4_6g36430 FvH4_6g36430
malus_domestica	MD09G1169000.v1.1 MD17G1157800.v1.1
prunus_persica	Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1
pyrus_communis	pycom09g08660 pycom17g15110
rosa_chinensis	RchiOBHm_Chr2g0148421
rosa_laevigata	RLG00000020349
rosa_multiflora	Rmu_co8500471.1_g000001 Rmu_sc0007332.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098750
rosa_rugosa	Rorug02G0406900 Rorug02G0407000
rosa_samantha	Rh2AG465600 Rh2BG478800 Rh2CG452100 Rh2DG487600
rosa_wichuraiana	Rw2G037950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	776
AfaI	GTAC	3 cut(s)	97, 114, 286
AfiI	CCNNNNNNNGG	2 cut(s)	737, 738
AflIII	ACRYGT	2 cut(s)	19, 674
AgsI	TTSAA	3 cut(s)	245, 393, 723
AjnI	CCWGG	1 cut(s)	736
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	5 cut(s)	328, 504, 590, 784, 817
AluI	AGCT	5 cut(s)	328, 504, 590, 784, 817
Alw21I	GWGCWC	2 cut(s)	260, 786
AoxI	GGCC	3 cut(s)	156, 517, 740
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	157, 740
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	4 cut(s)	26, 177, 539, 719
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	260, 786
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	765, 815
BceAI	ACGGC	2 cut(s)	338, 504
BciT130I	CCWGG	1 cut(s)	738
BcnI	CCSGG	1 cut(s)	616
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	616, 738
BmgT120I	GGNCC	2 cut(s)	157, 740
BmrFI	CCNGG	2 cut(s)	616, 738
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	478, 703
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	776
BsaJI	CCNNGG	5 cut(s)	37, 508, 520, 614, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	737, 738
Bse1I	ACTGG	3 cut(s)	110, 370, 487
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	5 cut(s)	37, 508, 520, 614, 737
BseGI	GGATG	2 cut(s)	98, 424
BseLI	CCNNNNNNNGG	2 cut(s)	737, 738
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	3 cut(s)	110, 370, 487
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	3 cut(s)	158, 519, 742
BsiHKAI	GWGCWC	2 cut(s)	260, 786
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	737, 738
BsmI	GAATGC	1 cut(s)	771
BsnI	GGCC	3 cut(s)	158, 519, 742
Bsp1286I	GDGCHC	2 cut(s)	260, 786
Bsp1407I	TGTACA	2 cut(s)	95, 284
Bsp143I	GATC	2 cut(s)	547, 574
Bsp19I	CCATGG	2 cut(s)	37, 508
BspANI	GGCC	3 cut(s)	158, 519, 742
BspCNI	CTCAG	1 cut(s)	772
BspHI	TCATGA	2 cut(s)	27, 459
BsrGI	TGTACA	2 cut(s)	95, 284
BsrI	ACTGG	3 cut(s)	110, 370, 487
BssECI	CCNNGG	5 cut(s)	37, 508, 520, 614, 737
BssMI	GATC	2 cut(s)	547, 574
BssNI	GRCGYC	1 cut(s)	776
BssT1I	CCWWGG	2 cut(s)	37, 508
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	776
BstAUI	TGTACA	2 cut(s)	95, 284
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	3 cut(s)	37, 508, 520
BstF5I	GGATG	2 cut(s)	98, 424
BstKTI	GATC	2 cut(s)	550, 577
BstMBI	GATC	2 cut(s)	547, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	775, 790
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	2 cut(s)	23, 678
BstSCI	CCNGG	2 cut(s)	614, 736
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	515
BsuRI	GGCC	3 cut(s)	158, 519, 742
BtgI	CCRYGG	3 cut(s)	37, 508, 520
BtgZI	GCGATG	1 cut(s)	784
BtsCI	GGATG	2 cut(s)	98, 424
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	2 cut(s)	27, 459
Cfr13I	GGNCC	2 cut(s)	157, 740
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	3 cut(s)	96, 113, 285
CviAII	CATG	8 cut(s)	20, 28, 38, 116, 460, 509, 675, 788
CviQI	GTAC	3 cut(s)	96, 113, 285
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	2 cut(s)	549, 576
DpnII	GATC	2 cut(s)	547, 574
EaeI	YGGCCR	1 cut(s)	517
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	2 cut(s)	37, 508
Eco24I	GRGCYC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	784
EcoICRI	GAGCTC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	2 cut(s)	37, 508
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	2 cut(s)	37, 508
FaeI	CATG	8 cut(s)	23, 31, 41, 119, 463, 512, 678, 791
FatI	CATG	8 cut(s)	19, 27, 37, 115, 459, 508, 674, 787
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	2 cut(s)	85, 431
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	158, 519, 742
HapII	CCGG	1 cut(s)	616
HgaI	GACGC	1 cut(s)	784
Hin1I	GRCGYC	1 cut(s)	776
Hin1II	CATG	8 cut(s)	23, 31, 41, 119, 463, 512, 678, 791
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	8 cut(s)	31, 42, 78, 86, 134, 203, 233, 389
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	4 cut(s)	26, 177, 539, 719
Hpy188I	TCNGA	6 cut(s)	66, 139, 319, 451, 496, 574
Hpy188III	TCNNGA	2 cut(s)	28, 460
HpyAV	CCTTC	3 cut(s)	134, 457, 753
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	775, 790
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	1 cut(s)	268
Hsp92I	GRCGYC	1 cut(s)	776
Hsp92II	CATG	8 cut(s)	23, 31, 41, 119, 463, 512, 678, 791
Kzo9I	GATC	2 cut(s)	547, 574
LmnI	GCTCC	1 cut(s)	789
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	478, 703
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	3 cut(s)	32, 527, 725
MalI	GATC	2 cut(s)	549, 576
MboI	GATC	2 cut(s)	547, 574
MboII	GAAGA	4 cut(s)	233, 264, 297, 338
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	260, 786
MluCI	AATT	6 cut(s)	475, 513, 551, 636, 668, 844
MlyI	GAGTC	3 cut(s)	40, 51, 95
MnlI	CCTC	9 cut(s)	191, 225, 366, 409, 518, 651, 658, 742, 796
MseI	TTAA	3 cut(s)	410, 474, 671
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	616, 738
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	2 cut(s)	775, 790
NciI	CCSGG	1 cut(s)	616
NcoI	CCATGG	2 cut(s)	37, 508
NdeII	GATC	2 cut(s)	547, 574
NlaIII	CATG	8 cut(s)	23, 31, 41, 119, 463, 512, 678, 791
NmuCI	GTSAC	3 cut(s)	32, 527, 725
NspI	RCATGY	2 cut(s)	23, 678
PagI	TCATGA	2 cut(s)	27, 459
PciI	ACATGT	2 cut(s)	19, 674
PctI	GAATGC	1 cut(s)	771
PfeI	GAWTC	5 cut(s)	78, 134, 203, 233, 389
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	3 cut(s)	39, 50, 94
PpsI	GAGTC	3 cut(s)	39, 50, 94
PscI	ACATGT	2 cut(s)	19, 674
Psp124BI	GAGCTC	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspPI	GGNCC	2 cut(s)	157, 740
RsaI	GTAC	3 cut(s)	97, 114, 286
RsaNI	GTAC	3 cut(s)	96, 113, 285
SacI	GAGCTC	1 cut(s)	786
SaqAI	TTAA	3 cut(s)	410, 474, 671
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	547, 574
Sau96I	GGNCC	2 cut(s)	157, 740
SchI	GAGTC	3 cut(s)	40, 51, 95
ScrFI	CCNGG	2 cut(s)	616, 738
SduI	GDGCHC	2 cut(s)	260, 786
SfaNI	GCATC	2 cut(s)	478, 703
SfcI	CTRYAG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
Sse9I	AATT	6 cut(s)	475, 513, 551, 636, 668, 844
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	786
StyD4I	CCNGG	2 cut(s)	614, 736
StyI	CCWWGG	2 cut(s)	37, 508
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	311, 653, 695
TasI	AATT	6 cut(s)	475, 513, 551, 636, 668, 844
TatI	WGTACW	3 cut(s)	95, 112, 284
TfiI	GAWTC	5 cut(s)	78, 134, 203, 233, 389
Tru1I	TTAA	3 cut(s)	410, 474, 671
Tru9I	TTAA	3 cut(s)	410, 474, 671
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	3 cut(s)	32, 527, 725
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	3 cut(s)	32, 527, 725
TspDTI	ATGAA	9 cut(s)	17, 159, 181, 297, 456, 476, 639, 648, 735
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	2 cut(s)	23, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.