Rorug02G0406900
MYB Family

MYB-CC type transfactor, LHEQLE motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004098
Physical Location & Seq
Forward (+)
51930000 .. 51932252
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0406900.1

Sequence Viewer

Length: 1956 bp
ATGATTCCAGGGCTATTTGAAGCAATTGCAAGAAATGACACGCAGACTTTCATCGACTTGGTTGAAAACAATGGAGGTTCTCTCATTCAGAAAACTGAGGAAACAAAAAACTCAGTGTTACACCTTGCTGCAAGGTTTGGGCACGTTGAGCTGGTTGCCTATATCACTAAGCTGCTTCCTGACTTGGTTTCTGTTGGGAACATTAAGGGAGAAACTCCATTACATGAAGCTTGTCGCCAAGGGAATACCAGTGTTGTAAAGCTGCTGTTAGAGGTCAATCCATATGTGGCTTGTAGTCTTAACCACGAAATGCAAACTGCTTTCTACATGGCTTATATTGTTAGGAGTATTTTAGAAGCTTGCCCCAGGTTTGCTTGGAAGGTTGACAGCAAAGGACTTTTGCCGCTCCATTTGGCTTGCGAAACAGGTCACGTAGAGATAACAAGAACACTCTTGACGATTGATCCAAACCTTGCTCTTGAGTTTAACCCTTACGGTTACACACCACTACACTTGGCTGCGATGAATGGTCAAATCAAAATCCTTGAGGAACTTTTACTGTGCTCTCCCAAATCTTTAGAACTTCTCACACGAGACAGGGAAACTGTCTTTCATCTTTCAGTAAGATTCAACAGATACAGTATGTTTACCTCTTTGGCAAAGAATTATAACGACACCAACCTCCTCAACCAGGCTGACAAGCATGGTAACACAATCTTACATCTCACTGTCGCTGCAGGGAACACTAGATTATCGGAGTACATCATCAGAAACACTAAGGTAGATGTCAATTTTAAGAACCAAAGAGGTGAAACAGCGTTGGACATCCTAAATCAGCAAAGAACATTATCGGATCTTAGAAACATGTTGAAGAGTTTTGGTGGCAGGACAAGTGCTGAGCTGTTCCCTTTAACCCCAAAGGTTGATGAGATAGATTCTGAGACTACAACATTAGAAAGTCCTAGAGCTGCACTTGAGCAAGAATTTGAAATGCTTTTTGAAGGTAATACGCATCCAGGAAGTGATCAATATGATTGTGAAATTGGCAGGGGGCGCATGGCTAGAAACTGGTCTGGAGTTATCCCATTCATGATGGATTCAATCCTCAGAAACAATCAACCACTGGAAGAGTTCACTACAGTACAAGCGAAGATGAATCCATGTCATCAAGTTGTGATGAACTCTGATAATGATTTTGGCTCAAATTCTTCTAGAACAAGAATGAGCTCCCAAGTCTCGAATCCAAAGCAGCTTCCGAAGCCAAGAGGAAAAAATAAAGTGGGTAAAACTAGGCAATATGAGATCTATAGGGAGGCATTGCAAAATACTAGGAACACTATCACAATAGTTGCTGTTTTGATTGCCTCGGTTACTTTTACTGCTGGCATAAACCCTCCTGGTGGTGTCTACCAGGATGGATGGCTTAGAGGACAGTCAACTGTTGGCAGAACAACAGCCTTTAAGGTCTTTACAATAAGCAACACAGCAGCATTGTTCATATCCATGTGCATTGTCATTGTGTTGGTGAGCATCATTCCCTTCCGGCGAAAATCACTGATGAAACTACTTGTGATTGCTCACAAAGTCTTGTGGGTGGCGGTTTCCCTCATGGCTACAGCTTACATTGCAGCCTCATGGATAATCATGCCACATGGACACGGTGAAGGAGAAAACTGGACCCTTGAAGTTGTGATATCTGTGTGTGCAGGGACTATGGGATTTGTTTTTCTTTGTCTTGGTGTCACATGGACTAAACACAGGTTGATGAAACTGAAATGGAGGAAACAGATATGTAAGACTGCAGAGGAAAGAGCACATACACAAGCAGCACTAGCACAAGAACGAGCACATAAAAGGGCGCAGCAAATAACAGCGGATACTCCAGAATACAGCTCTTCAGTATCCATGAACGCCCATGCTGAGGGTTTCGAAGAACTAGGATGCCATACTTACTGA

Protein Analysis

651

Amino Acids

72.85

Weight (kDa)

8.47

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 5 - 92 1.6e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 40 - 90 2.5e-08 Ankyrin repeats (many copies)
Ank PF00023 70 - 93 7.9e-06 Ankyrin repeat
Ank_2 PF12796 113 - 186 9.7e-12 Ankyrin repeats (3 copies)
PGG PF13962 438 - 547 1.8e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 1407
AciI CCGC 3 cut(s) 404, 1598, 1874
AclWI GGATC 2 cut(s) 458, 861
AcsI RAATTY 2 cut(s) 983, 1204
AcuI CTGAAG 1 cut(s) 1881
AfaI GTAC 2 cut(s) 761, 1143
AfiI CCNNNNNNNGG 3 cut(s) 691, 1400, 1921
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 8 cut(s) 20, 65, 631, 871, 989, 1001, 1101, 1685
AjnI CCWGG 6 cut(s) 7, 365, 690, 1015, 1396, 1410
Alw21I GWGCWC 4 cut(s) 566, 1229, 1816, 1849
Alw26I GTCTC 3 cut(s) 588, 935, 1240
AlwI GGATC 2 cut(s) 458, 861
ApoI RAATTY 2 cut(s) 983, 1204
AspLEI GCGC 2 cut(s) 1056, 1861
AspS9I GGNCC 1 cut(s) 1677
AsuHPI GGTGA 3 cut(s) 821, 1537, 1673
AsuII TTCGAA 1 cut(s) 1929
AvaII GGWCC 1 cut(s) 1677
BaeGI GKGCMC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 1229
BauI CACGAG 1 cut(s) 591
Bbv12I GWGCWC 4 cut(s) 566, 1229, 1816, 1849
BbvCI CCTCAGC 1 cut(s) 1920
BccI CCATC 3 cut(s) 1087, 1409, 1413
BciT130I CCWGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
BciVI GTATCC 2 cut(s) 1870, 1912
BclI TGATCA 1 cut(s) 1024
BcoDI GTCTC 3 cut(s) 588, 935, 1240
BfaI CTAG 8 cut(s) 747, 963, 1062, 1212, 1290, 1329, 1832, 1937
BfmI CTRYAG 5 cut(s) 735, 1137, 1306, 1614, 1800
BfuI GTATCC 2 cut(s) 1870, 1912
BglII AGATCT 1 cut(s) 1302
BlpI GCTNAGC 1 cut(s) 897
Bme1390I CCNGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
Bme18I GGWCC 1 cut(s) 1677
BmgT120I GGNCC 1 cut(s) 1677
BmiI GGNNCC 1 cut(s) 1679
BmrFI CCNGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
BmsI GCATC 3 cut(s) 1021, 1539, 1931
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 2 cut(s) 1095, 1866
Bpu10I CCTNAGC 1 cut(s) 1920
Bpu1102I GCTNAGC 1 cut(s) 897
Bpu14I TTCGAA 1 cut(s) 1929
BpuEI CTTGAG 3 cut(s) 500, 566, 995
BsaAI YACGTR 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 8, 238, 365, 1365
Bsc4I CCNNNNNNNGG 3 cut(s) 691, 1400, 1921
Bse1I ACTGG 4 cut(s) 249, 1073, 1128, 1679
Bse3DI GCAATG 2 cut(s) 1316, 1623
BseBI CCWGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
BseDI CCNNGG 4 cut(s) 8, 238, 365, 1365
BseGI GGATG 5 cut(s) 825, 1012, 1420, 1424, 1946
BseLI CCNNNNNNNGG 3 cut(s) 691, 1400, 1921
BseMI GCAATG 2 cut(s) 1316, 1623
BseMII CTCAG 6 cut(s) 87, 126, 888, 930, 1120, 1911
BseNI ACTGG 4 cut(s) 249, 1073, 1128, 1679
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 144
BsgI GTGCAG 2 cut(s) 954, 1725
BsiHKAI GWGCWC 4 cut(s) 566, 1229, 1816, 1849
BsiSI CCGG 1 cut(s) 1543
BslFI GGGAC 1 cut(s) 1723
BslI CCNNNNNNNGG 3 cut(s) 691, 1400, 1921
BsmAI GTCTC 3 cut(s) 588, 935, 1240
BsmFI GGGAC 1 cut(s) 1723
Bsp119I TTCGAA 1 cut(s) 1929
Bsp1286I GDGCHC 5 cut(s) 144, 566, 1229, 1816, 1849
Bsp143I GATC 4 cut(s) 463, 853, 1024, 1302
Bsp1720I GCTNAGC 1 cut(s) 897
BspACI CCGC 3 cut(s) 404, 1598, 1874
BspCNI CTCAG 6 cut(s) 88, 125, 889, 931, 1119, 1912
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 1 cut(s) 1679
BspMAI CTGCAG 2 cut(s) 739, 1804
BspPI GGATC 2 cut(s) 458, 861
BspQI GCTCTTC 1 cut(s) 1900
BspT104I TTCGAA 1 cut(s) 1929
BsrBI CCGCTC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 1316, 1623
BsrI ACTGG 4 cut(s) 249, 1073, 1128, 1679
BssECI CCNNGG 4 cut(s) 8, 238, 365, 1365
BssMI GATC 4 cut(s) 463, 853, 1024, 1302
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
Bst4CI ACNGT 9 cut(s) 497, 561, 607, 641, 730, 1141, 1434, 1441, 1661
Bst6I CTCTTC 3 cut(s) 866, 1122, 1900
BstBAI YACGTR 1 cut(s) 433
BstBI TTCGAA 1 cut(s) 1929
BstC8I GCNNGC 3 cut(s) 361, 418, 1384
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 5 cut(s) 825, 1012, 1420, 1424, 1946
BstHHI GCGC 2 cut(s) 1056, 1861
BstKTI GATC 4 cut(s) 466, 856, 1027, 1305
BstMAI GTCTC 3 cut(s) 588, 935, 1240
BstMBI GATC 4 cut(s) 463, 853, 1024, 1302
BstMWI GCNNNNNNNGC 5 cut(s) 148, 1053, 1258, 1625, 1832
BstNI CCWGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 6 cut(s) 7, 365, 690, 1015, 1396, 1410
BstSFI CTRYAG 5 cut(s) 735, 1137, 1306, 1614, 1800
BstSLI GKGCMC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 853, 1302
BstYI RGATCY 2 cut(s) 853, 1302
BsuI GTATCC 2 cut(s) 1870, 1912
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 5 cut(s) 825, 1012, 1420, 1424, 1946
BtsIMutI CAGTG 5 cut(s) 120, 256, 726, 1121, 1553
Cac8I GCNNGC 3 cut(s) 361, 418, 1384
CciI TCATGA 1 cut(s) 1089
CfoI GCGC 2 cut(s) 1056, 1861
Cfr13I GGNCC 1 cut(s) 1677
Csp6I GTAC 2 cut(s) 760, 1142
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviQI GTAC 2 cut(s) 760, 1142
DpnI GATC 4 cut(s) 465, 855, 1026, 1304
DpnII GATC 4 cut(s) 463, 853, 1024, 1302
Eam1104I CTCTTC 3 cut(s) 866, 1122, 1900
EarI CTCTTC 3 cut(s) 866, 1122, 1900
Ecl136II GAGCTC 1 cut(s) 1227
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 1229
Eco32I GATATC 1 cut(s) 1695
Eco47I GGWCC 1 cut(s) 1677
Eco53kI GAGCTC 1 cut(s) 1227
Eco57I CTGAAG 1 cut(s) 1881
EcoICRI GAGCTC 1 cut(s) 1227
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoRII CCWGG 6 cut(s) 7, 365, 690, 1015, 1396, 1410
EcoRV GATATC 1 cut(s) 1695
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 1229
ErhI CCWWGG 1 cut(s) 238
FaqI GGGAC 1 cut(s) 1723
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 1024
FblI GTMKAC 1 cut(s) 1407
FokI GGATG 4 cut(s) 812, 999, 1427, 1431
FriOI GRGCYC 1 cut(s) 1229
FspBI CTAG 8 cut(s) 747, 963, 1062, 1212, 1290, 1329, 1832, 1937
GlaI GCGC 2 cut(s) 1055, 1860
GsuI CTGGAG 2 cut(s) 1095, 1866
HapII CCGG 1 cut(s) 1543
HhaI GCGC 2 cut(s) 1056, 1861
Hin6I GCGC 2 cut(s) 1054, 1859
HinP1I GCGC 2 cut(s) 1054, 1859
HincII GTYRAC 2 cut(s) 385, 1437
HindII GTYRAC 2 cut(s) 385, 1437
HindIII AAGCTT 2 cut(s) 228, 357
HinfI GANTC 6 cut(s) 4, 627, 935, 1097, 1156, 1240
HpaII CCGG 1 cut(s) 1543
HphI GGTGA 3 cut(s) 821, 1537, 1673
Hpy166II GTNNAC 5 cut(s) 385, 648, 1134, 1408, 1437
Hpy188I TCNGA 8 cut(s) 90, 757, 770, 853, 940, 1109, 1186, 1257
Hpy188III TCNNGA 8 cut(s) 179, 454, 479, 1074, 1090, 1212, 1237, 1883
Hpy8I GTNNAC 5 cut(s) 385, 648, 1134, 1408, 1437
HpyAV CCTTC 4 cut(s) 373, 995, 1549, 1658
HpyCH4III ACNGT 9 cut(s) 497, 561, 607, 641, 730, 1141, 1434, 1441, 1661
HpyCH4IV ACGT 2 cut(s) 144, 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 1053, 1258, 1625, 1832
HpySE526I ACGT 2 cut(s) 144, 432
HspAI GCGC 2 cut(s) 1054, 1859
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 4 cut(s) 463, 853, 1024, 1302
LguI GCTCTTC 1 cut(s) 1900
LmnI GCTCC 2 cut(s) 411, 1232
LweI GCATC 3 cut(s) 1021, 1539, 1931
MaeI CTAG 8 cut(s) 747, 963, 1062, 1212, 1290, 1329, 1832, 1937
MaeII ACGT 2 cut(s) 144, 432
MaeIII GTNAC 6 cut(s) 117, 428, 497, 707, 1369, 1741
MalI GATC 4 cut(s) 465, 855, 1026, 1304
MbiI CCGCTC 1 cut(s) 406
MboI GATC 4 cut(s) 463, 853, 1024, 1302
MboII GAAGA 6 cut(s) 883, 1139, 1162, 1200, 1887, 1943
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 853, 1302
MhlI GDGCHC 5 cut(s) 144, 566, 1229, 1816, 1849
MluCI AATT 6 cut(s) 24, 664, 790, 983, 1041, 1204
MmeI TCCRAC 1 cut(s) 801
MseI TTAA 6 cut(s) 204, 300, 486, 795, 911, 1461
MslI CAYNNNNRTG 1 cut(s) 1502
MspA1I CMGCKG 1 cut(s) 1874
MspI CCGG 1 cut(s) 1543
MspR9I CCNGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
MwoI GCNNNNNNNGC 5 cut(s) 148, 1053, 1258, 1625, 1832
NdeI CATATG 1 cut(s) 283
NdeII GATC 4 cut(s) 463, 853, 1024, 1302
NlaIV GGNNCC 1 cut(s) 1679
NmuCI GTSAC 2 cut(s) 428, 1741
NspI RCATGY 1 cut(s) 868
NspV TTCGAA 1 cut(s) 1929
PagI TCATGA 1 cut(s) 1089
PciI ACATGT 1 cut(s) 864
PciSI GCTCTTC 1 cut(s) 1900
PfeI GAWTC 6 cut(s) 4, 627, 935, 1097, 1156, 1240
PfoI TCCNGGA 1 cut(s) 1015
Ppu21I YACGTR 1 cut(s) 433
PscI ACATGT 1 cut(s) 864
PsiI TTATAA 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 1229
Psp6I CCWGG 6 cut(s) 7, 365, 690, 1015, 1396, 1410
PspGI CCWGG 6 cut(s) 7, 365, 690, 1015, 1396, 1410
PspN4I GGNNCC 1 cut(s) 1679
PspPI GGNCC 1 cut(s) 1677
PstI CTGCAG 2 cut(s) 739, 1804
PsuI RGATCY 2 cut(s) 853, 1302
RsaI GTAC 2 cut(s) 761, 1143
RsaNI GTAC 2 cut(s) 760, 1142
RseI CAYNNNNRTG 1 cut(s) 1502
SacI GAGCTC 1 cut(s) 1229
SapI GCTCTTC 1 cut(s) 1900
SaqAI TTAA 6 cut(s) 204, 300, 486, 795, 911, 1461
Sau3AI GATC 4 cut(s) 463, 853, 1024, 1302
Sau96I GGNCC 1 cut(s) 1677
ScrFI CCNGG 6 cut(s) 9, 367, 692, 1017, 1398, 1412
SduI GDGCHC 5 cut(s) 144, 566, 1229, 1816, 1849
SfaNI GCATC 3 cut(s) 1021, 1539, 1931
SfcI CTRYAG 5 cut(s) 735, 1137, 1306, 1614, 1800
SfuI TTCGAA 1 cut(s) 1929
SinI GGWCC 1 cut(s) 1677
SmiMI CAYNNNNRTG 1 cut(s) 1502
SmlI CTYRAG 3 cut(s) 479, 545, 974
SmoI CTYRAG 3 cut(s) 479, 545, 974
Sse9I AATT 6 cut(s) 24, 664, 790, 983, 1041, 1204
SsiI CCGC 3 cut(s) 404, 1598, 1874
SspMI CTAG 8 cut(s) 747, 963, 1062, 1212, 1290, 1329, 1832, 1937
SstI GAGCTC 1 cut(s) 1229
StyD4I CCNGG 6 cut(s) 7, 365, 690, 1015, 1396, 1410
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 9 cut(s) 497, 561, 607, 641, 730, 1141, 1434, 1441, 1661
TaiI ACGT 2 cut(s) 147, 435
TaqI TCGA 3 cut(s) 54, 1238, 1929
TasI AATT 6 cut(s) 24, 664, 790, 983, 1041, 1204
TatI WGTACW 2 cut(s) 759, 1141
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 6 cut(s) 4, 627, 935, 1097, 1156, 1240
Tru1I TTAA 6 cut(s) 204, 300, 486, 795, 911, 1461
Tru9I TTAA 6 cut(s) 204, 300, 486, 795, 911, 1461
TscAI CASTG 5 cut(s) 120, 256, 733, 1128, 1560
TseFI GTSAC 2 cut(s) 428, 1741
Tsp45I GTSAC 2 cut(s) 428, 1741
TspRI CASTG 5 cut(s) 120, 256, 733, 1128, 1560
VpaK11BI GGWCC 1 cut(s) 1677
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 2 cut(s) 983, 1204
XbaI TCTAGA 1 cut(s) 1211
XceI RCATGY 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 1407
XspI CTAG 8 cut(s) 747, 963, 1062, 1212, 1290, 1329, 1832, 1937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.