FvH4_6g36430
MYB Family

MYB-CC type transfactor, LHEQLE motif

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28659615 .. 28664823
5209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36430.t2

Sequence Viewer

Length: 1467 bp
ATGAAGGTAGGGCTTTCATCTGCAATCATGAGTCTCCATGGAGTCAGTTCAGTAACACAAAGTGGGACTACCAAAGGAATCACACAGTCATACTGTACATCCCTATCCCCGGCACATGATTTTTTGGGTTGTGAATCAGAAGGCAGGAATTCAGTGGCCCATGAATGTTCATCCACTCGCCTCTCACCTTTCATGCGGACAGAATCTTTTAGCTCTCCTACCAATATGCGAGAATCTAGTCTTCAACGTGTCAAGAGCACATTTTCACGTTCTTCTGTTTTTTGTACAAGTTTGTATCAGTCTTCTTCATCAACTTCTGAAACCTCCAGGCAGCTTGGAAATCTGCCATTTCTTCCCCACCCTCCAACATACAGCCAGTCCAATTCTGCTGTTGATTCAACATCTCCATTGCTTTTAAGTCAGGATATGAGTAATCAATACGATGATGAACAATCAGACTATCTCATGAAAGACTTCCTTAATATGACTGGAGATGCTTCTGATGGTAGCTTCCATGAAATCGGCTGTGGAAGTGACACTATGGCACTTACAGAGCAATTGGAGTTTCAGTTTTTGTCTGATCAACTTGACATAGCTATCACGGACAATGGTGAAAATCCACGGCTTGATGAAATATATGATATTCCTCGAGCCTCATCAGAACCAACGATAGAATTGACATGTAGTAAGAGTTGTGGCTCGACAGCACCACTGGTTGATGCTCTTTCAAGTCATCCCTCTCCTGGGCCTTCCTCTGCACATAGACCACGAATGCGGTGGACACCTGAGCTTCATGAGCGTTTTGTAGAGGCTGTTAAGAAGCTTGATGGAGCTGAAAAGGCTACTCCAAAAGCTGTACTAAAAGTTATGAATGTTGAGGGTTTAACCATTTATCATGTGAAAAGCCACTTGCAGAAGTACAGGCTTGCCAAGTATATGCCCGAGAAAAAAGAAGATAAGAAGGCTTCTAGCTCTGAAGAAAAGAAGGCTGCTTCAAGTGGAAATGAAAGCGATGGACGAAGAAAAGGGAGCATCCATATCACTGAGGCTCTGCGCATGCAAATGGAAGTTCAGAAACAACTGCATGAGCAGCTTGAGGTTCAAAGGTCTCTTCAGCTACGCATAGAGGAGCATGCAAAGTACTTGGAGAAGATCTTGGAGGAACAACAGAAAGCCGGTAGTGCATTACTTTCTCCACAAGCCTTGTCGTCATTGACAACTAATTCCCTTAAAGACTCTGAACAGCAGCCTCCCCCATCAGCCTGTATATCAGCTTCACAACCAGCTGCGTCCGACTCATCATCACCTGATTCACCTCTGTCACTGAAGCATAAAGCTGCTGCCTGTAGTGAGTCTGAGGCACACGCATACACTAAAAAGCTTCGTATTGAAGAGAAACCAGATGACCCAGTAGTTGAAAATCCTTCGGCAACGGTAACTACTACTCCTACTACTACTTCGCAGTAG

Protein Analysis

489

Amino Acids

53.31

Weight (kDa)

5.66

Isoelectric Point (pI)

66.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 257 - 308 2.2e-09 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 345 - 392 6.5e-23 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1055
AciI CCGC 2 cut(s) 196, 775
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 3 cut(s) 996, 1097, 1346
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 5 cut(s) 97, 286, 858, 920, 1142
AfiI CCNNNNNNNGG 3 cut(s) 109, 743, 744
AflIII ACRYGT 2 cut(s) 247, 680
AgsI TTSAA 7 cut(s) 245, 399, 729, 996, 1103, 1391, 1418
AjnI CCWGG 2 cut(s) 326, 742
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 38, 1113
Ama87I CYCGRG 2 cut(s) 648, 941
AoxI GGCC 2 cut(s) 156, 746
ApeKI GCWGC 7 cut(s) 331, 989, 1090, 1246, 1286, 1337, 1340
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 1056
AspS9I GGNCC 2 cut(s) 157, 746
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 4 cut(s) 177, 623, 1296, 1305
AvaI CYCGRG 2 cut(s) 648, 941
BarI GAAGNNNNNNTAC 2 cut(s) 1258, 1290
BbsI GAAGAC 2 cut(s) 233, 294
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 7 cut(s) 343, 976, 1102, 1258, 1273, 1324, 1327
BccI CCATC 4 cut(s) 497, 821, 1007, 1264
BceAI ACGGC 1 cut(s) 638
BciT130I CCWGG 2 cut(s) 328, 744
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 38, 1113
BfaI CTAG 2 cut(s) 237, 969
BfmI CTRYAG 1 cut(s) 1345
BglII AGATCT 1 cut(s) 1152
BisI GCNGC 7 cut(s) 332, 990, 1091, 1247, 1287, 1338, 1341
BlsI GCNGC 7 cut(s) 333, 991, 1092, 1248, 1288, 1339, 1342
BmcAI AGTACT 1 cut(s) 1142
Bme1390I CCNGG 3 cut(s) 110, 328, 744
BmeT110I CYCGRG 2 cut(s) 648, 941
BmgT120I GGNCC 2 cut(s) 157, 746
BmrFI CCNGG 3 cut(s) 110, 328, 744
BmrI ACTGGG 1 cut(s) 1403
BmsI GCATC 3 cut(s) 484, 709, 1041
BmuI ACTGGG 1 cut(s) 1403
BpiI GAAGAC 2 cut(s) 233, 294
BpmI CTGGAG 2 cut(s) 310, 510
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 1115
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 1113
BsaJI CCNNGG 4 cut(s) 37, 108, 620, 743
BsaXI ACNNNNNCTCC 4 cut(s) 554, 584, 1429, 1459
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 743, 744
Bse118I RCCGGY 1 cut(s) 1175
Bse1I ACTGG 4 cut(s) 376, 493, 717, 1409
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 2 cut(s) 328, 744
BseDI CCNNGG 4 cut(s) 37, 108, 620, 743
BseGI GGATG 4 cut(s) 98, 170, 733, 1032
BseLI CCNNNNNNNGG 3 cut(s) 109, 743, 744
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 777, 1035, 1347
BseNI ACTGG 4 cut(s) 376, 493, 717, 1409
BseRI GAGGAG 1 cut(s) 1142
BseXI GCAGC 7 cut(s) 343, 976, 1102, 1258, 1273, 1324, 1327
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 2 cut(s) 158, 748
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 2 cut(s) 648, 941
BsiSI CCGG 2 cut(s) 110, 1176
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 109, 743, 744
BsmAI GTCTC 2 cut(s) 38, 1113
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 2 cut(s) 158, 748
Bso31I GGTCTC 1 cut(s) 1113
BsoBI CYCGRG 2 cut(s) 648, 941
Bsp1286I GDGCHC 1 cut(s) 260
Bsp1407I TGTACA 2 cut(s) 95, 284
Bsp143I GATC 2 cut(s) 580, 1152
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 2 cut(s) 196, 775
BspANI GGCC 2 cut(s) 158, 748
BspCNI CTCAG 3 cut(s) 778, 1036, 1348
BspHI TCATGA 3 cut(s) 27, 465, 793
BspTNI GGTCTC 1 cut(s) 1113
BsrDI GCAATG 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 1175
BsrGI TGTACA 2 cut(s) 95, 284
BsrI ACTGG 4 cut(s) 376, 493, 717, 1409
BssAI RCCGGY 1 cut(s) 1175
BssECI CCNNGG 4 cut(s) 37, 108, 620, 743
BssMI GATC 2 cut(s) 580, 1152
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 328, 744
Bst4CI ACNGT 3 cut(s) 87, 95, 1435
Bst6I CTCTTC 2 cut(s) 1116, 1386
BstAUI TGTACA 2 cut(s) 95, 284
BstC8I GCNNGC 3 cut(s) 927, 1058, 1134
BstDEI CTNAG 3 cut(s) 786, 1044, 1356
BstDSI CCRYGG 2 cut(s) 37, 620
BstF5I GGATG 4 cut(s) 98, 170, 733, 1032
BstHHI GCGC 1 cut(s) 1056
BstKTI GATC 2 cut(s) 583, 1155
BstMAI GTCTC 2 cut(s) 38, 1113
BstMBI GATC 2 cut(s) 580, 1152
BstMWI GCNNNNNNNGC 4 cut(s) 796, 839, 1090, 1181
BstNI CCWGG 2 cut(s) 328, 744
BstNSI RCATGY 3 cut(s) 684, 1060, 1136
BstSCI CCNGG 3 cut(s) 108, 326, 742
BstSFI CTRYAG 1 cut(s) 1345
BstV1I GCAGC 7 cut(s) 343, 976, 1102, 1258, 1273, 1324, 1327
BstV2I GAAGAC 2 cut(s) 233, 294
BstX2I RGATCY 1 cut(s) 1152
BstYI RGATCY 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 158, 748
BtgI CCRYGG 2 cut(s) 37, 620
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 4 cut(s) 98, 170, 733, 1032
BtsIMutI CAGTG 4 cut(s) 159, 710, 1041, 1322
Cac8I GCNNGC 3 cut(s) 927, 1058, 1134
CciI TCATGA 3 cut(s) 27, 465, 793
CfoI GCGC 1 cut(s) 1056
Cfr10I RCCGGY 1 cut(s) 1175
Cfr13I GGNCC 2 cut(s) 157, 746
CseI GACGC 1 cut(s) 1278
Csp6I GTAC 5 cut(s) 96, 285, 857, 919, 1141
CspCI CAANNNNNGTGG 2 cut(s) 1185, 1220
CviQI GTAC 5 cut(s) 96, 285, 857, 919, 1141
DdeI CTNAG 3 cut(s) 786, 1044, 1356
DpnI GATC 2 cut(s) 582, 1154
DpnII GATC 2 cut(s) 580, 1152
DraIII CACNNNGTG 1 cut(s) 62
Eam1104I CTCTTC 2 cut(s) 1116, 1386
EarI CTCTTC 2 cut(s) 1116, 1386
Eco130I CCWWGG 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 1113
Eco57I CTGAAG 3 cut(s) 996, 1097, 1346
Eco88I CYCGRG 2 cut(s) 648, 941
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 326, 742
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 7 cut(s) 332, 990, 1091, 1247, 1287, 1338, 1341
FokI GGATG 4 cut(s) 85, 157, 720, 1019
Fsp4HI GCNGC 7 cut(s) 332, 990, 1091, 1247, 1287, 1338, 1341
FspBI CTAG 2 cut(s) 237, 969
FspI TGCGCA 1 cut(s) 1055
GlaI GCGC 1 cut(s) 1055
GluI GCNGC 7 cut(s) 332, 990, 1091, 1247, 1287, 1338, 1341
GsuI CTGGAG 2 cut(s) 310, 510
HaeIII GGCC 2 cut(s) 158, 748
HapII CCGG 2 cut(s) 110, 1176
HgaI GACGC 1 cut(s) 1278
HhaI GCGC 1 cut(s) 1056
Hin6I GCGC 1 cut(s) 1054
HinP1I GCGC 1 cut(s) 1054
HindIII AAGCTT 2 cut(s) 821, 1379
HpaII CCGG 2 cut(s) 110, 1176
HphI GGTGA 4 cut(s) 177, 623, 1296, 1305
Hpy166II GTNNAC 1 cut(s) 780
Hpy188III TCNNGA 5 cut(s) 28, 253, 422, 466, 794
Hpy8I GTNNAC 1 cut(s) 780
HpyAV CCTTC 5 cut(s) 134, 759, 955, 979, 1434
HpyCH4III ACNGT 3 cut(s) 87, 95, 1435
HpyCH4IV ACGT 2 cut(s) 247, 268
HpyCH4V TGCA 7 cut(s) 23, 758, 913, 1060, 1084, 1136, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 796, 839, 1090, 1181
HpyF3I CTNAG 3 cut(s) 786, 1044, 1356
HpySE526I ACGT 2 cut(s) 247, 268
HspAI GCGC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 2 cut(s) 580, 1152
LmnI GCTCC 3 cut(s) 830, 1029, 1129
Lsp1109I GCAGC 7 cut(s) 343, 976, 1102, 1258, 1273, 1324, 1327
LweI GCATC 3 cut(s) 484, 709, 1041
MaeI CTAG 2 cut(s) 237, 969
MaeII ACGT 2 cut(s) 247, 268
MaeIII GTNAC 4 cut(s) 52, 533, 1320, 1435
MalI GATC 2 cut(s) 582, 1154
MboI GATC 2 cut(s) 580, 1152
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 1 cut(s) 1152
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 5 cut(s) 148, 382, 557, 674, 1222
MlyI GAGTC 5 cut(s) 40, 51, 1229, 1289, 1361
MmeI TCCRAC 2 cut(s) 389, 1317
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 5 cut(s) 416, 480, 816, 884, 1230
MslI CAYNNNNRTG 1 cut(s) 1061
MspA1I CMGCKG 1 cut(s) 1286
MspI CCGG 2 cut(s) 110, 1176
MspR9I CCNGG 3 cut(s) 110, 328, 744
MunI CAATTG 1 cut(s) 557
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 2 cut(s) 328, 744
MwoI GCNNNNNNNGC 4 cut(s) 796, 839, 1090, 1181
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 37
NdeII GATC 2 cut(s) 580, 1152
NmuCI GTSAC 2 cut(s) 533, 1320
NsbI TGCGCA 1 cut(s) 1055
NspI RCATGY 3 cut(s) 684, 1060, 1136
PaeI GCATGC 2 cut(s) 1060, 1136
PaeR7I CTCGAG 1 cut(s) 648
PagI TCATGA 3 cut(s) 27, 465, 793
PciI ACATGT 1 cut(s) 680
PctI GAATGC 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 6 cut(s) 78, 134, 203, 233, 395, 1310
PkrI GCNGC 7 cut(s) 333, 991, 1092, 1248, 1288, 1339, 1342
PleI GAGTC 5 cut(s) 39, 50, 1229, 1289, 1360
PpsI GAGTC 5 cut(s) 39, 50, 1229, 1289, 1360
PscI ACATGT 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 326, 742
PspGI CCWGG 2 cut(s) 326, 742
PspPI GGNCC 2 cut(s) 157, 746
PspXI VCTCGAGB 1 cut(s) 648
PsuI RGATCY 1 cut(s) 1152
PvuII CAGCTG 1 cut(s) 1286
RsaI GTAC 5 cut(s) 97, 286, 858, 920, 1142
RsaNI GTAC 5 cut(s) 96, 285, 857, 919, 1141
RseI CAYNNNNRTG 1 cut(s) 1061
SaqAI TTAA 5 cut(s) 416, 480, 816, 884, 1230
SatI GCNGC 7 cut(s) 332, 990, 1091, 1247, 1287, 1338, 1341
Sau3AI GATC 2 cut(s) 580, 1152
Sau96I GGNCC 2 cut(s) 157, 746
ScaI AGTACT 1 cut(s) 1142
SchI GAGTC 5 cut(s) 40, 51, 1229, 1289, 1361
ScrFI CCNGG 3 cut(s) 110, 328, 744
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 3 cut(s) 484, 709, 1041
SfcI CTRYAG 1 cut(s) 1345
Sfr274I CTCGAG 1 cut(s) 648
SlaI CTCGAG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 2 cut(s) 648, 1094
SmoI CTYRAG 2 cut(s) 648, 1094
SphI GCATGC 2 cut(s) 1060, 1136
Sse9I AATT 5 cut(s) 148, 382, 557, 674, 1222
SsiI CCGC 2 cut(s) 196, 775
SspMI CTAG 2 cut(s) 237, 969
StyD4I CCNGG 3 cut(s) 108, 326, 742
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 3 cut(s) 87, 95, 1435
TaiI ACGT 2 cut(s) 250, 271
TaqI TCGA 2 cut(s) 649, 701
TasI AATT 5 cut(s) 148, 382, 557, 674, 1222
TatI WGTACW 5 cut(s) 95, 284, 856, 918, 1140
TfiI GAWTC 6 cut(s) 78, 134, 203, 233, 395, 1310
Tru1I TTAA 5 cut(s) 416, 480, 816, 884, 1230
Tru9I TTAA 5 cut(s) 416, 480, 816, 884, 1230
TscAI CASTG 4 cut(s) 159, 717, 1048, 1329
TseFI GTSAC 2 cut(s) 533, 1320
TseI GCWGC 7 cut(s) 331, 989, 1090, 1246, 1286, 1337, 1340
Tsp45I GTSAC 2 cut(s) 533, 1320
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 4 cut(s) 159, 717, 1048, 1329
XapI RAATTY 1 cut(s) 148
XceI RCATGY 3 cut(s) 684, 1060, 1136
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XhoI CTCGAG 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 237, 969
ZrmI AGTACT 1 cut(s) 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.