Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007332.1

Orthogroup ID

OG0004098

Physical Location & Seq

Genomic Coordinates Reverse (-)

19095 .. 21742

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007332.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgagtcaccatggagtcagttctgtatcacaaagtcagactaccaaaggaatcacagagtcatactgtacatccctatccccagtacatgattttttgggttgtgaatcagaaggcaggagttcagtggcccgtgaatgttcatcagcacgcctctcacctttcatacggacagaatcttttagccctcctactaatgtgcgagaatctagtcttcaacattccaagagcacattttcacgttcttctgttttttgtacaagtttgtatcagtcatcttcatcgagttctgaacggcagcttggaaatctgccatttcttccccaccctccaatatacagccagtccatttctgctgttgattcaaaatatccaatgcttttaagtgaggatgtgagcaatcaatatgatgatgaacaatcagattatctcatgaaggactttcttaatttgactggagatgcttctgatgatagcttccatggaattggccgtggaggtgacactatagcacttacagatcaattggagtttcagtttttgtcagatcaacttgacatagctatcacagacaatggagaaaatccccggcttgatgaaatatatgaaattcctcaagcctcatcgaaaccagccatagaattaacatgtagtaagagttgtggctcgacagcaccacctgttgatgctctttcaagtcacccctctcctgggccttcatctgcacatagaccaagaatgcgatggacgcctgagctccatgagcgttttgtagaggctgtaaagaagcttgatggggctgaaaaggctactccaaaaggcgttttaaaggttatgaatgttgagggcttaaccatctatcatgtgaaaagccacttacagaagtaccgacttgccaagtatatgcccgagaaaaaggaagataagaaggcctctagctctgaagaaaagaaagcagctgcaagcggaatggaaagcgatggacgaagaaaagggagcttccatatcactgaggctctccgcatgcaaatggaagttcagaaacaactgcatgagcagcttgaggttcaaaggtctcttcagctacgcattgaggagcatgcaaagtacttggagaagatcttggaggaacaacagaaagccggtagtgcgttactttctccacaagccttgtcgtcactgactactaattccattaaagaccctgaacagcatccttccccatcagctggtgtatcaccttcacaaccacctgagtctgactcattatcacctctgtcactgaagcacaaagctgctgactgtagtgactctggggcacaagcatgcactaaaaagcttcgcattgaagaaaaaccagatgagcctgtagttgaaaatctctcggcaacagtaactactactactgcttcccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

472

Amino Acids

51.72

Weight (kDa)

5.7

Isoelectric Point (pI)

67.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13040 AT3G13040 AT3G13040
fragaria_vesca	FvH4_6g36430 FvH4_6g36430 FvH4_6g36430
malus_domestica	MD09G1169000.v1.1 MD17G1157800.v1.1
prunus_persica	Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1
pyrus_communis	pycom09g08660 pycom17g15110
rosa_chinensis	RchiOBHm_Chr2g0148421
rosa_laevigata	RLG00000020349
rosa_multiflora	Rmu_co8500471.1_g000001 Rmu_sc0007332.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098750
rosa_rugosa	Rorug02G0406900 Rorug02G0407000
rosa_samantha	Rh2AG465600 Rh2BG478800 Rh2CG452100 Rh2DG487600
rosa_wichuraiana	Rw2G037950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1229
AciI	CCGC	2 cut(s)	966, 1021
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	3 cut(s)	963, 1064, 1304
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	5 cut(s)	70, 87, 259, 887, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	710, 711, 1229
AflIII	ACRYGT	1 cut(s)	647
AgsI	TTSAA	6 cut(s)	218, 366, 696, 1070, 1349, 1376
AjnI	CCWGG	1 cut(s)	709
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
Alw21I	GWGCWC	2 cut(s)	233, 759
Alw26I	GTCTC	1 cut(s)	1080
Ama87I	CYCGRG	1 cut(s)	908
AoxI	GGCC	4 cut(s)	129, 490, 713, 930
ApeKI	GCWGC	5 cut(s)	298, 956, 959, 1057, 1295
ApoI	RAATTY	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	130, 713
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	5 cut(s)	150, 512, 692, 1230, 1263
AvaI	CYCGRG	1 cut(s)	908
BaeGI	GKGCMC	1 cut(s)	1321
BaeI	ACNNNNGTAYC	2 cut(s)	869, 902
BanII	GRGCYC	1 cut(s)	759
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	233, 759
BbvI	GCAGC	5 cut(s)	310, 946, 968, 1069, 1282
BccI	CCATC	5 cut(s)	738, 788, 863, 974, 1231
BceAI	ACGGC	2 cut(s)	311, 477
BciT130I	CCWGG	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	1080
BfaI	CTAG	2 cut(s)	210, 936
BfmI	CTRYAG	3 cut(s)	507, 1303, 1368
BglII	AGATCT	1 cut(s)	1119
BisI	GCNGC	5 cut(s)	299, 957, 960, 1058, 1296
BlsI	GCNGC	5 cut(s)	300, 958, 961, 1059, 1297
BmcAI	AGTACT	1 cut(s)	1109
Bme1390I	CCNGG	2 cut(s)	589, 711
BmeT110I	CYCGRG	1 cut(s)	908
BmgT120I	GGNCC	2 cut(s)	130, 713
BmrFI	CCNGG	2 cut(s)	589, 711
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	3 cut(s)	451, 676, 1222
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	1247, 1279
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	600, 1082
BpuMI	CCSGG	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	1080
BsaJI	CCNNGG	5 cut(s)	10, 481, 493, 587, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	710, 711, 1229
Bse118I	RCCGGY	1 cut(s)	1142
Bse1I	ACTGG	3 cut(s)	83, 343, 460
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	5 cut(s)	10, 481, 493, 587, 710
BseGI	GGATG	3 cut(s)	71, 397, 1213
BseLI	CCNNNNNNNGG	3 cut(s)	710, 711, 1229
BseMII	CTCAG	3 cut(s)	744, 1002, 1245
BseNI	ACTGG	3 cut(s)	83, 343, 460
BseRI	GAGGAG	1 cut(s)	1109
BseSI	GKGCMC	1 cut(s)	1321
BseXI	GCAGC	5 cut(s)	310, 946, 968, 1069, 1282
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	131, 492, 715, 932
BsiHKAI	GWGCWC	2 cut(s)	233, 759
BsiHKCI	CYCGRG	1 cut(s)	908
BsiSI	CCGG	2 cut(s)	589, 1143
BslI	CCNNNNNNNGG	3 cut(s)	710, 711, 1229
BsmAI	GTCTC	1 cut(s)	1080
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	4 cut(s)	131, 492, 715, 932
Bso31I	GGTCTC	1 cut(s)	1080
BsoBI	CYCGRG	1 cut(s)	908
Bsp1286I	GDGCHC	3 cut(s)	233, 759, 1321
Bsp1407I	TGTACA	2 cut(s)	68, 257
Bsp143I	GATC	3 cut(s)	520, 547, 1119
Bsp19I	CCATGG	2 cut(s)	10, 481
BspACI	CCGC	2 cut(s)	966, 1021
BspANI	GGCC	4 cut(s)	131, 492, 715, 932
BspCNI	CTCAG	3 cut(s)	745, 1003, 1246
BspHI	TCATGA	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	1080
BsrFI	RCCGGY	1 cut(s)	1142
BsrGI	TGTACA	2 cut(s)	68, 257
BsrI	ACTGG	3 cut(s)	83, 343, 460
BssAI	RCCGGY	1 cut(s)	1142
BssECI	CCNNGG	5 cut(s)	10, 481, 493, 587, 710
BssMI	GATC	3 cut(s)	520, 547, 1119
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	2 cut(s)	10, 481
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	68, 1304, 1393
Bst6I	CTCTTC	1 cut(s)	1083
BstACI	GRCGYC	1 cut(s)	749
BstAUI	TGTACA	2 cut(s)	68, 257
BstC8I	GCNNGC	5 cut(s)	151, 964, 1025, 1101, 1327
BstDEI	CTNAG	3 cut(s)	753, 1011, 1254
BstDSI	CCRYGG	3 cut(s)	10, 481, 493
BstF5I	GGATG	3 cut(s)	71, 397, 1213
BstKTI	GATC	3 cut(s)	523, 550, 1122
BstMAI	GTCTC	1 cut(s)	1080
BstMBI	GATC	3 cut(s)	520, 547, 1119
BstMWI	GCNNNNNNNGC	5 cut(s)	748, 763, 806, 1057, 1148
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	4 cut(s)	651, 1027, 1103, 1329
BstSCI	CCNGG	2 cut(s)	587, 709
BstSFI	CTRYAG	3 cut(s)	507, 1303, 1368
BstSLI	GKGCMC	1 cut(s)	1321
BstV1I	GCAGC	5 cut(s)	310, 946, 968, 1069, 1282
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	1119
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	1119
BsuRI	GGCC	4 cut(s)	131, 492, 715, 932
BtgI	CCRYGG	3 cut(s)	10, 481, 493
BtgZI	GCGATG	2 cut(s)	757, 993
BtsCI	GGATG	3 cut(s)	71, 397, 1213
BtsIMutI	CAGTG	4 cut(s)	132, 1008, 1178, 1280
Cac8I	GCNNGC	5 cut(s)	151, 964, 1025, 1101, 1327
CciI	TCATGA	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	1142
Cfr13I	GGNCC	2 cut(s)	130, 713
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	5 cut(s)	69, 86, 258, 886, 1108
CspCI	CAANNNNNGTGG	2 cut(s)	1152, 1187
CviQI	GTAC	5 cut(s)	69, 86, 258, 886, 1108
DdeI	CTNAG	3 cut(s)	753, 1011, 1254
DpnI	GATC	3 cut(s)	522, 549, 1121
DpnII	GATC	3 cut(s)	520, 547, 1119
DraI	TTTAAA	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	1083
EarI	CTCTTC	1 cut(s)	1083
Ecl136II	GAGCTC	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	10, 481
Eco147I	AGGCCT	1 cut(s)	932
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	1080
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	3 cut(s)	963, 1064, 1304
Eco88I	CYCGRG	1 cut(s)	908
EcoICRI	GAGCTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	10, 481
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	10, 481
Fnu4HI	GCNGC	5 cut(s)	299, 957, 960, 1058, 1296
FokI	GGATG	3 cut(s)	58, 404, 1200
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	5 cut(s)	299, 957, 960, 1058, 1296
FspBI	CTAG	2 cut(s)	210, 936
GluI	GCNGC	5 cut(s)	299, 957, 960, 1058, 1296
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	131, 492, 715, 932
HapII	CCGG	2 cut(s)	589, 1143
HgaI	GACGC	1 cut(s)	757
Hin1I	GRCGYC	1 cut(s)	749
HindIII	AAGCTT	2 cut(s)	788, 1337
HpaII	CCGG	2 cut(s)	589, 1143
HphI	GGTGA	5 cut(s)	150, 512, 692, 1230, 1263
Hpy188I	TCNGA	9 cut(s)	39, 112, 292, 424, 469, 547, 943, 1041, 1261
Hpy188III	TCNNGA	1 cut(s)	433
HpyAV	CCTTC	6 cut(s)	107, 430, 726, 922, 1227, 1251
HpyCH4III	ACNGT	3 cut(s)	68, 1304, 1393
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	6 cut(s)	725, 962, 1027, 1051, 1103, 1329
HpyF10VI	GCNNNNNNNGC	5 cut(s)	748, 763, 806, 1057, 1148
HpyF3I	CTNAG	3 cut(s)	753, 1011, 1254
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	749
Kzo9I	GATC	3 cut(s)	520, 547, 1119
LmnI	GCTCC	3 cut(s)	762, 996, 1096
Lsp1109I	GCAGC	5 cut(s)	310, 946, 968, 1069, 1282
LweI	GCATC	3 cut(s)	451, 676, 1222
MaeI	CTAG	2 cut(s)	210, 936
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	8 cut(s)	5, 500, 698, 1152, 1176, 1278, 1307, 1393
MalI	GATC	3 cut(s)	522, 549, 1121
MboI	GATC	3 cut(s)	520, 547, 1119
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	1 cut(s)	1119
MhlI	GDGCHC	3 cut(s)	233, 759, 1321
MluCI	AATT	6 cut(s)	448, 486, 524, 609, 641, 1189
MlyI	GAGTC	6 cut(s)	13, 24, 68, 1256, 1265, 1304
MseI	TTAA	6 cut(s)	383, 447, 644, 827, 851, 1197
MslI	CAYNNNNRTG	2 cut(s)	1028, 1324
MspA1I	CMGCKG	2 cut(s)	959, 1229
MspI	CCGG	2 cut(s)	589, 1143
MspR9I	CCNGG	2 cut(s)	589, 711
MunI	CAATTG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	5 cut(s)	748, 763, 806, 1057, 1148
NciI	CCSGG	1 cut(s)	589
NcoI	CCATGG	2 cut(s)	10, 481
NdeII	GATC	3 cut(s)	520, 547, 1119
NmeAIII	GCCGAG	1 cut(s)	1364
NmuCI	GTSAC	6 cut(s)	5, 500, 698, 1176, 1278, 1307
NspI	RCATGY	4 cut(s)	651, 1027, 1103, 1329
PaeI	GCATGC	3 cut(s)	1027, 1103, 1329
PagI	TCATGA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	932
PciI	ACATGT	1 cut(s)	647
PctI	GAATGC	1 cut(s)	744
PfeI	GAWTC	5 cut(s)	51, 107, 176, 206, 362
PflMI	CCANNNNNTGG	1 cut(s)	1229
PkrI	GCNGC	5 cut(s)	300, 958, 961, 1059, 1297
PleI	GAGTC	6 cut(s)	12, 23, 67, 1256, 1264, 1304
PpsI	GAGTC	6 cut(s)	12, 23, 67, 1256, 1264, 1304
PscI	ACATGT	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	130, 713
PsuI	RGATCY	1 cut(s)	1119
PvuII	CAGCTG	2 cut(s)	959, 1229
RsaI	GTAC	5 cut(s)	70, 87, 259, 887, 1109
RsaNI	GTAC	5 cut(s)	69, 86, 258, 886, 1108
RseI	CAYNNNNRTG	2 cut(s)	1028, 1324
SacI	GAGCTC	1 cut(s)	759
SaqAI	TTAA	6 cut(s)	383, 447, 644, 827, 851, 1197
SatI	GCNGC	5 cut(s)	299, 957, 960, 1058, 1296
Sau3AI	GATC	3 cut(s)	520, 547, 1119
Sau96I	GGNCC	2 cut(s)	130, 713
ScaI	AGTACT	1 cut(s)	1109
SchI	GAGTC	6 cut(s)	13, 24, 68, 1256, 1265, 1304
ScrFI	CCNGG	2 cut(s)	589, 711
SduI	GDGCHC	3 cut(s)	233, 759, 1321
SfaNI	GCATC	3 cut(s)	451, 676, 1222
SfcI	CTRYAG	3 cut(s)	507, 1303, 1368
SmiMI	CAYNNNNRTG	2 cut(s)	1028, 1324
SmlI	CTYRAG	2 cut(s)	615, 1061
SmoI	CTYRAG	2 cut(s)	615, 1061
SphI	GCATGC	3 cut(s)	1027, 1103, 1329
Sse9I	AATT	6 cut(s)	448, 486, 524, 609, 641, 1189
SseBI	AGGCCT	1 cut(s)	932
SsiI	CCGC	2 cut(s)	966, 1021
SspMI	CTAG	2 cut(s)	210, 936
SstI	GAGCTC	1 cut(s)	759
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	2 cut(s)	587, 709
StyI	CCWWGG	2 cut(s)	10, 481
TaaI	ACNGT	3 cut(s)	68, 1304, 1393
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	3 cut(s)	284, 626, 668
TasI	AATT	6 cut(s)	448, 486, 524, 609, 641, 1189
TatI	WGTACW	4 cut(s)	68, 85, 257, 1107
TfiI	GAWTC	5 cut(s)	51, 107, 176, 206, 362
Tru1I	TTAA	6 cut(s)	383, 447, 644, 827, 851, 1197
Tru9I	TTAA	6 cut(s)	383, 447, 644, 827, 851, 1197
TscAI	CASTG	4 cut(s)	132, 1015, 1185, 1287
TseFI	GTSAC	6 cut(s)	5, 500, 698, 1176, 1278, 1307
TseI	GCWGC	5 cut(s)	298, 956, 959, 1057, 1295
Tsp45I	GTSAC	6 cut(s)	5, 500, 698, 1176, 1278, 1307
TspDTI	ATGAA	9 cut(s)	132, 154, 270, 429, 449, 612, 621, 708, 851
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	4 cut(s)	132, 1015, 1185, 1287
Van91I	CCANNNNNTGG	1 cut(s)	1229
XapI	RAATTY	1 cut(s)	609
XceI	RCATGY	4 cut(s)	651, 1027, 1103, 1329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	741
XspI	CTAG	2 cut(s)	210, 936
ZrmI	AGTACT	1 cut(s)	1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.