Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004098

Physical Location & Seq

Genomic Coordinates Forward (+)

51935715 .. 51936065

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0407000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTCATATCACAATGCAATGGCTACAAGACTGGCATCCTCTCTGACGTCCTGGATCTGAGGCTGTCAAAGGGTAAGGGACTCCAGCAACCGGAGCTGTTTATGGTGGGCAAGTTGCTTACTGCTCGGGACTTTAATACAGAATCTTTTTTGGGGATGTTTCGACTTGCTTGGAACGTCAATGGGGTTTTTAGGTTTGAACCTGCTGAAGGGAATCGGATCTTGTTCACTTTTTTGGACCCTATTGACAGAGACCGGGTGTGGCACGGCAGCCCTTGGGGTTTCAACTACACTTCGATCGCCATCACTGCCTATGACAGGGTTGAACAGATCGATCAGGTACCGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

116

Amino Acids

13.29

Weight (kDa)

5.73

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13040 AT3G13040 AT3G13040
fragaria_vesca	FvH4_6g36430 FvH4_6g36430 FvH4_6g36430
malus_domestica	MD09G1169000.v1.1 MD17G1157800.v1.1
prunus_persica	Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1
pyrus_communis	pycom09g08660 pycom17g15110
rosa_chinensis	RchiOBHm_Chr2g0148421
rosa_laevigata	RLG00000020349
rosa_multiflora	Rmu_co8500471.1_g000001 Rmu_sc0007332.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098750
rosa_rugosa	Rorug02G0406900 Rorug02G0407000
rosa_samantha	Rh2AG465600 Rh2BG478800 Rh2CG452100 Rh2DG487600
rosa_wichuraiana	Rw2G037950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	211
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	63, 227
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	91, 209, 318
AgsI	TTSAA	3 cut(s)	200, 286, 326
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	63, 227
Ama87I	CYCGRG	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	238
BaeI	ACNNNNGTAYC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	53, 257
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	240, 342
BmrFI	CCNGG	2 cut(s)	53, 257
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 209, 318
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	36, 162
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	3 cut(s)	91, 209, 318
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	340
BshVI	ATCGAT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	92, 256
BslFI	GGGAC	2 cut(s)	93, 143
BslI	CCNNNNNNNGG	3 cut(s)	91, 209, 318
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	93, 143
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	55, 219, 297, 330, 334
BspACI	CCGC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	240, 342
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	63, 227
BspT107I	GGYRCC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	5 cut(s)	55, 219, 297, 330, 334
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	59
BstENI	CCTNNNNNAGG	2 cut(s)	207, 316
BstF5I	GGATG	2 cut(s)	36, 162
BstKTI	GATC	5 cut(s)	58, 222, 300, 333, 337
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	5 cut(s)	55, 219, 297, 330, 334
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 308
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 255
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	55, 219
BstYI	RGATCY	2 cut(s)	55, 219
Bsu15I	ATCGAT	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	36, 162
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	341
CviJI	RGCY	4 cut(s)	24, 64, 97, 273
CviKI_1	RGCY	4 cut(s)	24, 64, 97, 273
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	5 cut(s)	57, 221, 299, 332, 336
DpnII	GATC	5 cut(s)	55, 219, 297, 330, 334
Eco130I	CCWWGG	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	2 cut(s)	207, 316
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaiI	YATR	3 cut(s)	8, 104, 315
FaqI	GGGAC	2 cut(s)	93, 143
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	23, 169
Fsp4HI	GCNGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	2 cut(s)	92, 256
Hin1I	GRCGYC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	81, 143, 214
HpaII	CCGG	2 cut(s)	92, 256
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	46, 60, 219
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	48, 177
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 308
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	2 cut(s)	48, 177
Hsp92I	GRCGYC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	344
Kzo9I	GATC	5 cut(s)	55, 219, 297, 330, 334
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	9 cut(s)	18, 38, 65, 98, 105, 216, 269, 304, 323
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	2 cut(s)	48, 177
MalI	GATC	5 cut(s)	57, 221, 299, 332, 336
MboI	GATC	5 cut(s)	55, 219, 297, 330, 334
MflI	RGATCY	2 cut(s)	55, 219
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	50, 54
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	2 cut(s)	92, 256
MspR9I	CCNGG	2 cut(s)	53, 257
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	94, 308
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	5 cut(s)	55, 219, 297, 330, 334
NlaIV	GGNNCC	2 cut(s)	240, 342
PfeI	GAWTC	2 cut(s)	143, 214
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	272
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	240, 342
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	55, 219
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	5 cut(s)	55, 219, 297, 330, 334
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	53, 257
SetI	ASST	6 cut(s)	51, 99, 180, 197, 205, 342
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	238
SsiI	CCGC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	51, 255
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	2 cut(s)	51, 180
TaqI	TCGA	3 cut(s)	163, 296, 333
TfiI	GAWTC	2 cut(s)	143, 214
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	1 cut(s)	270
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	2 cut(s)	207, 316
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.