Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004098

Physical Location & Seq

Genomic Coordinates Reverse (-)

70373063 .. 70377930

Gene Structure 4868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG487600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGAAGGTAGGGCTTTCACATGTAATCATGAGTCACCACGGAGTCAGTTCTGTATCACAAAGTCAGACTACCAAAGGAATCACAGAGTCATACTGTACATCCCTATCCCCAGTACATGATTTTTGGGGTTGTGAATCAGAAGGCAGGAGTTCAGTGGCCCGTGAATGTTCATCAGCACGCCTCTCACCTTTCATACGGACAGAATCTTTTAGCTCTCCTACTAATGTGCGAGAATCTAGTCTTCAACATTCCAAGAGCACATTTTCTCGTTCTTCTGTTTTTTGTACAAGTTTGTATCAGTCATCTTCATCGAGTTCTGAACGGCAGCTTGGAAATCTGCCATTTCTTCCCCACCCTCCAATATACAGCCAGTCCATTTCTGCTGTTGATTCAAAATATCCAATGCTTTTAAGTGAGGATGTGAGCAATCAATATGATGATGAACAATCAGATTATCTCATGAAGGACTTTCTTAATTTGACTGGAGATGCTTCTGATGATAGCTTCCATGGAATTGGCCGTGGAGGTGACACTATAGCACTTACAGATCAATTGGAGTTTCAGTTTTTGTCAGATCAACTTGACATAGCTATCACAGACAATGGAGAAAATCCCCGGCTTGATGAAATATATGAAATTCCTCAAGCCTCATCGAAACCAGCCATAGAATTAACATGTAGTAAGAGTTGTGGCTCGACAGCACCACCTGTTGATGCTCTTTCAAGTCACCCCTCTCCTGGGCCTTCATCTGCACATAGACCAAGAATGCGATGGACGCCTGAGCTCCATGAGCGTTTTGTAGAGGCTGTAAAGAAGCTTGATGGGGCTGAAAAGGCTACTCCAAAAGGCGTTTTAAAGGTTATGAATGTTGAGGGCTTAACCATCTATCATGTGAAAAGCCACTTACAGAAGTACCGACTTGCCAAGTATATGCCCGAGAAAAAGGAAGATAAGAAGGCCTCTAGCTCTGAAGAAAAGAGAGCAGCTGCAAGCGGAATGGAAAGCGATGGACGAAGAAAAGGGAGCTTCCATATCACTGAGGCTCTCCGCATGCAAATGGAAGTTCAGAAACAACTGCATGAGCAGCTTGAGGTTCAAAGGTCTCTTCAGCTACGCATAGAGGAGCATGCAAAGTACTTGGAGAAGATCTTGGAGGAACAACAGAAAGCCGGTAGTGCGTTACTTTCTCCACAAGCCTTGTCGTCACTGACTACTAATTCCATTAAAGACCCTGAACAGCATCCTTCCCCATCAGCTGGTGTATCACCTTCACAACCAACTGAGTCTGACTCATTATCACCTCTGTCACTGAAGCACAAAGCTGCTGACTGTAGTGACTCTGGGGCACAAGCATGCACTAAAAAGCTTCGCATTGAAGAAAAACCAGATGAGCCTGTAGTTGAAAATCTCTCTGCAACAGTAACTACTACTACTGCTTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

481

Amino Acids

52.78

Weight (kDa)

5.82

Isoelectric Point (pI)

66.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	255 - 306	7.7e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	344 - 390	3.5e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13040 AT3G13040 AT3G13040
fragaria_vesca	FvH4_6g36430 FvH4_6g36430 FvH4_6g36430
malus_domestica	MD09G1169000.v1.1 MD17G1157800.v1.1
prunus_persica	Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1 Prupe.3G027400_v2.0.a1
pyrus_communis	pycom09g08660 pycom17g15110
rosa_chinensis	RchiOBHm_Chr2g0148421
rosa_laevigata	RLG00000020349
rosa_multiflora	Rmu_co8500471.1_g000001 Rmu_sc0007332.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098750
rosa_rugosa	Rorug02G0406900 Rorug02G0407000
rosa_samantha	Rh2AG465600 Rh2BG478800 Rh2CG452100 Rh2DG487600
rosa_wichuraiana	Rw2G037950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1256
AciI	CCGC	2 cut(s)	993, 1048
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	636
AcuI	CTGAAG	3 cut(s)	990, 1091, 1331
AcyI	GRCGYC	1 cut(s)	776
AfaI	GTAC	5 cut(s)	97, 114, 286, 914, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	737, 738, 1256
AflIII	ACRYGT	2 cut(s)	19, 674
AgsI	TTSAA	6 cut(s)	245, 393, 723, 1097, 1376, 1403
AjnI	CCWGG	1 cut(s)	736
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
Alw21I	GWGCWC	2 cut(s)	260, 786
Alw26I	GTCTC	1 cut(s)	1107
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	4 cut(s)	156, 517, 740, 957
ApeKI	GCWGC	5 cut(s)	325, 983, 986, 1084, 1322
ApoI	RAATTY	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	157, 740
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	6 cut(s)	26, 177, 539, 719, 1257, 1290
AvaI	CYCGRG	1 cut(s)	935
BaeGI	GKGCMC	1 cut(s)	1348
BaeI	ACNNNNGTAYC	2 cut(s)	896, 929
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	260, 786
BbvI	GCAGC	5 cut(s)	337, 973, 995, 1096, 1309
BccI	CCATC	5 cut(s)	765, 815, 890, 1001, 1258
BceAI	ACGGC	2 cut(s)	338, 504
BciT130I	CCWGG	1 cut(s)	738
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	1107
BfaI	CTAG	2 cut(s)	237, 963
BfmI	CTRYAG	3 cut(s)	534, 1330, 1395
BglII	AGATCT	1 cut(s)	1146
BisI	GCNGC	5 cut(s)	326, 984, 987, 1085, 1323
BlsI	GCNGC	5 cut(s)	327, 985, 988, 1086, 1324
BmcAI	AGTACT	1 cut(s)	1136
Bme1390I	CCNGG	2 cut(s)	616, 738
BmeT110I	CYCGRG	1 cut(s)	935
BmgT120I	GGNCC	2 cut(s)	157, 740
BmrFI	CCNGG	2 cut(s)	616, 738
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	478, 703, 1249
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	1274, 1306
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	627, 1109
BpuMI	CCSGG	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	1107
BsaJI	CCNNGG	5 cut(s)	37, 508, 520, 614, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	737, 738, 1256
Bse118I	RCCGGY	1 cut(s)	1169
Bse1I	ACTGG	3 cut(s)	110, 370, 487
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	5 cut(s)	37, 508, 520, 614, 737
BseGI	GGATG	3 cut(s)	98, 424, 1240
BseLI	CCNNNNNNNGG	3 cut(s)	737, 738, 1256
BseMII	CTCAG	3 cut(s)	771, 1029, 1272
BseNI	ACTGG	3 cut(s)	110, 370, 487
BseRI	GAGGAG	1 cut(s)	1136
BseSI	GKGCMC	1 cut(s)	1348
BseXI	GCAGC	5 cut(s)	337, 973, 995, 1096, 1309
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	4 cut(s)	158, 519, 742, 959
BsiHKAI	GWGCWC	2 cut(s)	260, 786
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	2 cut(s)	616, 1170
BslI	CCNNNNNNNGG	3 cut(s)	737, 738, 1256
BsmAI	GTCTC	1 cut(s)	1107
BsmI	GAATGC	1 cut(s)	771
BsnI	GGCC	4 cut(s)	158, 519, 742, 959
Bso31I	GGTCTC	1 cut(s)	1107
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	3 cut(s)	260, 786, 1348
Bsp1407I	TGTACA	2 cut(s)	95, 284
Bsp143I	GATC	3 cut(s)	547, 574, 1146
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	993, 1048
BspANI	GGCC	4 cut(s)	158, 519, 742, 959
BspCNI	CTCAG	3 cut(s)	772, 1030, 1273
BspHI	TCATGA	2 cut(s)	27, 459
BspTNI	GGTCTC	1 cut(s)	1107
BsrFI	RCCGGY	1 cut(s)	1169
BsrGI	TGTACA	2 cut(s)	95, 284
BsrI	ACTGG	3 cut(s)	110, 370, 487
BssAI	RCCGGY	1 cut(s)	1169
BssECI	CCNNGG	5 cut(s)	37, 508, 520, 614, 737
BssMI	GATC	3 cut(s)	547, 574, 1146
BssNI	GRCGYC	1 cut(s)	776
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	3 cut(s)	95, 1331, 1420
Bst6I	CTCTTC	1 cut(s)	1110
BstACI	GRCGYC	1 cut(s)	776
BstAUI	TGTACA	2 cut(s)	95, 284
BstC8I	GCNNGC	5 cut(s)	178, 991, 1052, 1128, 1354
BstDEI	CTNAG	3 cut(s)	780, 1038, 1281
BstDSI	CCRYGG	3 cut(s)	37, 508, 520
BstF5I	GGATG	3 cut(s)	98, 424, 1240
BstKTI	GATC	3 cut(s)	550, 577, 1149
BstMAI	GTCTC	1 cut(s)	1107
BstMBI	GATC	3 cut(s)	547, 574, 1146
BstMWI	GCNNNNNNNGC	5 cut(s)	775, 790, 833, 1084, 1175
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	5 cut(s)	23, 678, 1054, 1130, 1356
BstSCI	CCNGG	2 cut(s)	614, 736
BstSFI	CTRYAG	3 cut(s)	534, 1330, 1395
BstSLI	GKGCMC	1 cut(s)	1348
BstV1I	GCAGC	5 cut(s)	337, 973, 995, 1096, 1309
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	1146
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	1146
BsuRI	GGCC	4 cut(s)	158, 519, 742, 959
BtgI	CCRYGG	3 cut(s)	37, 508, 520
BtgZI	GCGATG	2 cut(s)	784, 1020
BtsCI	GGATG	3 cut(s)	98, 424, 1240
BtsIMutI	CAGTG	4 cut(s)	159, 1035, 1205, 1307
Cac8I	GCNNGC	5 cut(s)	178, 991, 1052, 1128, 1354
CciI	TCATGA	2 cut(s)	27, 459
Cfr10I	RCCGGY	1 cut(s)	1169
Cfr13I	GGNCC	2 cut(s)	157, 740
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	5 cut(s)	96, 113, 285, 913, 1135
CspCI	CAANNNNNGTGG	2 cut(s)	1179, 1214
CviQI	GTAC	5 cut(s)	96, 113, 285, 913, 1135
DdeI	CTNAG	3 cut(s)	780, 1038, 1281
DpnI	GATC	3 cut(s)	549, 576, 1148
DpnII	GATC	3 cut(s)	547, 574, 1146
DraI	TTTAAA	1 cut(s)	855
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	1110
EarI	CTCTTC	1 cut(s)	1110
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	959
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	1107
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	3 cut(s)	990, 1091, 1331
Eco88I	CYCGRG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	326, 984, 987, 1085, 1323
FokI	GGATG	3 cut(s)	85, 431, 1227
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	5 cut(s)	326, 984, 987, 1085, 1323
FspBI	CTAG	2 cut(s)	237, 963
GluI	GCNGC	5 cut(s)	326, 984, 987, 1085, 1323
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	4 cut(s)	158, 519, 742, 959
HapII	CCGG	2 cut(s)	616, 1170
HgaI	GACGC	1 cut(s)	784
Hin1I	GRCGYC	1 cut(s)	776
HindIII	AAGCTT	2 cut(s)	815, 1364
HpaII	CCGG	2 cut(s)	616, 1170
HphI	GGTGA	6 cut(s)	26, 177, 539, 719, 1257, 1290
Hpy188I	TCNGA	9 cut(s)	66, 139, 319, 451, 496, 574, 970, 1068, 1288
Hpy188III	TCNNGA	2 cut(s)	28, 460
HpyAV	CCTTC	6 cut(s)	134, 457, 753, 949, 1254, 1278
HpyCH4III	ACNGT	3 cut(s)	95, 1331, 1420
HpyCH4V	TGCA	7 cut(s)	752, 989, 1054, 1078, 1130, 1356, 1415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	775, 790, 833, 1084, 1175
HpyF3I	CTNAG	3 cut(s)	780, 1038, 1281
Hsp92I	GRCGYC	1 cut(s)	776
Kzo9I	GATC	3 cut(s)	547, 574, 1146
LmnI	GCTCC	3 cut(s)	789, 1023, 1123
Lsp1109I	GCAGC	5 cut(s)	337, 973, 995, 1096, 1309
LweI	GCATC	3 cut(s)	478, 703, 1249
MaeI	CTAG	2 cut(s)	237, 963
MaeIII	GTNAC	8 cut(s)	32, 527, 725, 1179, 1203, 1305, 1334, 1420
MalI	GATC	3 cut(s)	549, 576, 1148
MboI	GATC	3 cut(s)	547, 574, 1146
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	1146
MhlI	GDGCHC	3 cut(s)	260, 786, 1348
MluCI	AATT	6 cut(s)	475, 513, 551, 636, 668, 1216
MlyI	GAGTC	6 cut(s)	40, 51, 95, 1283, 1292, 1331
MseI	TTAA	6 cut(s)	410, 474, 671, 854, 878, 1224
MslI	CAYNNNNRTG	2 cut(s)	1055, 1351
MspA1I	CMGCKG	2 cut(s)	986, 1256
MspI	CCGG	2 cut(s)	616, 1170
MspR9I	CCNGG	2 cut(s)	616, 738
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	5 cut(s)	775, 790, 833, 1084, 1175
NciI	CCSGG	1 cut(s)	616
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	3 cut(s)	547, 574, 1146
NmuCI	GTSAC	6 cut(s)	32, 527, 725, 1203, 1305, 1334
NspI	RCATGY	5 cut(s)	23, 678, 1054, 1130, 1356
PaeI	GCATGC	3 cut(s)	1054, 1130, 1356
PagI	TCATGA	2 cut(s)	27, 459
PceI	AGGCCT	1 cut(s)	959
PciI	ACATGT	2 cut(s)	19, 674
PctI	GAATGC	1 cut(s)	771
PfeI	GAWTC	5 cut(s)	78, 134, 203, 233, 389
PflMI	CCANNNNNTGG	1 cut(s)	1256
PkrI	GCNGC	5 cut(s)	327, 985, 988, 1086, 1324
PleI	GAGTC	6 cut(s)	39, 50, 94, 1283, 1291, 1331
PpsI	GAGTC	6 cut(s)	39, 50, 94, 1283, 1291, 1331
PscI	ACATGT	2 cut(s)	19, 674
Psp124BI	GAGCTC	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspPI	GGNCC	2 cut(s)	157, 740
PsuI	RGATCY	1 cut(s)	1146
PvuII	CAGCTG	2 cut(s)	986, 1256
RsaI	GTAC	5 cut(s)	97, 114, 286, 914, 1136
RsaNI	GTAC	5 cut(s)	96, 113, 285, 913, 1135
RseI	CAYNNNNRTG	2 cut(s)	1055, 1351
SacI	GAGCTC	1 cut(s)	786
SaqAI	TTAA	6 cut(s)	410, 474, 671, 854, 878, 1224
SatI	GCNGC	5 cut(s)	326, 984, 987, 1085, 1323
Sau3AI	GATC	3 cut(s)	547, 574, 1146
Sau96I	GGNCC	2 cut(s)	157, 740
ScaI	AGTACT	1 cut(s)	1136
SchI	GAGTC	6 cut(s)	40, 51, 95, 1283, 1292, 1331
ScrFI	CCNGG	2 cut(s)	616, 738
SduI	GDGCHC	3 cut(s)	260, 786, 1348
SfaNI	GCATC	3 cut(s)	478, 703, 1249
SfcI	CTRYAG	3 cut(s)	534, 1330, 1395
SmiMI	CAYNNNNRTG	2 cut(s)	1055, 1351
SmlI	CTYRAG	2 cut(s)	642, 1088
SmoI	CTYRAG	2 cut(s)	642, 1088
SphI	GCATGC	3 cut(s)	1054, 1130, 1356
Sse9I	AATT	6 cut(s)	475, 513, 551, 636, 668, 1216
SseBI	AGGCCT	1 cut(s)	959
SsiI	CCGC	2 cut(s)	993, 1048
SspMI	CTAG	2 cut(s)	237, 963
SstI	GAGCTC	1 cut(s)	786
StuI	AGGCCT	1 cut(s)	959
StyD4I	CCNGG	2 cut(s)	614, 736
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	95, 1331, 1420
TaqI	TCGA	3 cut(s)	311, 653, 695
TasI	AATT	6 cut(s)	475, 513, 551, 636, 668, 1216
TatI	WGTACW	4 cut(s)	95, 112, 284, 1134
TfiI	GAWTC	5 cut(s)	78, 134, 203, 233, 389
Tru1I	TTAA	6 cut(s)	410, 474, 671, 854, 878, 1224
Tru9I	TTAA	6 cut(s)	410, 474, 671, 854, 878, 1224
TscAI	CASTG	4 cut(s)	159, 1042, 1212, 1314
TseFI	GTSAC	6 cut(s)	32, 527, 725, 1203, 1305, 1334
TseI	GCWGC	5 cut(s)	325, 983, 986, 1084, 1322
Tsp45I	GTSAC	6 cut(s)	32, 527, 725, 1203, 1305, 1334
TspGWI	ACGGA	2 cut(s)	54, 211
TspRI	CASTG	4 cut(s)	159, 1042, 1212, 1314
Van91I	CCANNNNNTGG	1 cut(s)	1256
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	5 cut(s)	23, 678, 1054, 1130, 1356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XspI	CTAG	2 cut(s)	237, 963
ZrmI	AGTACT	1 cut(s)	1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.