Rh2BG478800
MYB Family

MYB-CC type transfactor, LHEQLE motif

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
67449535 .. 67452163
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG478800.1

Sequence Viewer

Length: 1530 bp
ATGAAGGTAGGGCTTTCACATGTAATCATGAGTCACCACGGAGTCAGTTCTGTATCACAAAGTCAGACTACCAAAGGAATCACAGAGTCATACTGTACATCCCTATCCCCAGTACATGATTTTTGGGGTTGTGAATCAGAAGGCAGGAGTTCAGTGGCCCGTGAATGTTCATCAGCACGCCTCTCACCTTTCATACGGACAGAATCTTTTAGCTCTCCTACTAATGTGCGAGAATCTAGTCTTCAACATTCCAAGAGCACATTTTCTCGTTCTTCTGTTTTTTGTACAAGTTTGTATCAGTCATCTTCATCGAGTTCTGAACGGCAGCTTGGAAATCTGCCATTTCTTCCCCACCCTCCAATATACAGCCAGTCCATTTCTGCTGTTGATTCAAAATATCCAATGCTTTTAAGTGAGGATGTGAGCAATCAATATGATGATGAACAATCAGATTATCTCATGAAGGACTTTCTTAATTTGACTGGAGATGCTTCTGATGATAGCTTCCATGGAATTGGCCGTGGAGGTGACACTATAGCACTTACAGATCAATTGGAGTTTCAGTTTTTGTCAGATCAACTTGACATAGCTATCACAGACAATGGAGAAAATCCCCGGCTTGATGAAATATATGAAATTCCTCAAGCCTCATCGAAACCAGCCATAGAATTAACATGTAGTAAGAGTTGTGGCTCGACAGCACCACCTGTTGATGCTCTTTCAAGTCACCCCTCTCCTGGGCCTTCATCTGCACATAGACCAAGAATGCGATGGACGCCTGAGCTCCATGAGCGTTTTGTAGAGGCTGTAAAGAAGCTTGATGGGGCTGAAAAGGCTACTCCAAAAGGCGTTTTAAAGGTTATGAATGTTGAGGGCTTAACCATCTATCATGTGAAAAGCCACTTACAGAAGTACCGACTTGCCAAGTATATGCCCGAGAAAAAGGAAGATAAGAAGGCCTCTAGCTCTGAAGAAAAGAGAGCAGCTGCAAGCGGAATGGAAAGCGATGGACGAAGAAAAGGGTTAGTTAACGTTGATCCATGTATTTTCTTTCTCAGTTACATATATGCATATCTTGTTTTGCTTAGTTTTGCTTGTTTTCCTAGGAGCTTCCATATCACTGAGGCTCTCCGCATGCAAATGGAAGTTCAGAAACAACTGCATGAGCAGCTTGAGGTTCAAAGGTCTCTTCAGCTACGCATAGAGGAGCATGCAAAGTACTTGGAGAAGATCTTGGAGGAACAACAGAAAGCCGGTAGTGCGTTACTTTCTCCACAAGCCTTGTCGTCACTGACTACTAATTCCATTAAAGACCCTGAACAGCATCCTTCCCCATCAGCTGGTGTATCACCTTCACAACCAACTGAGTCTGACTCATTATCACCTCTGTCACTGAAGCACAAAGCTGCTGACTGTAGTGACTCTGGGGCACAAGCATGCACTAAAAAGCTTCGCATTGAAGAAAAACCAGATGAGCCTGTAGTTGAAAATCTCTCTGCAACAGTAACTACTACTACTGCTTCCCAATAG

Protein Analysis

509

Amino Acids

56.05

Weight (kDa)

5.82

Isoelectric Point (pI)

65.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 255 - 306 8.3e-09 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 372 - 418 3.7e-23 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1340
AciI CCGC 2 cut(s) 993, 1132
AclI AACGTT 1 cut(s) 1032
AclWI GGATC 1 cut(s) 1031
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 636
AcuI CTGAAG 3 cut(s) 990, 1175, 1415
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 5 cut(s) 97, 114, 286, 914, 1220
AfiI CCNNNNNNNGG 3 cut(s) 737, 738, 1340
AflIII ACRYGT 2 cut(s) 19, 674
AgsI TTSAA 6 cut(s) 245, 393, 723, 1181, 1460, 1487
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
Alw21I GWGCWC 2 cut(s) 260, 786
Alw26I GTCTC 1 cut(s) 1191
AlwI GGATC 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 935
AoxI GGCC 4 cut(s) 156, 517, 740, 957
ApeKI GCWGC 5 cut(s) 325, 983, 986, 1168, 1406
ApoI RAATTY 1 cut(s) 636
AspA2I CCTAGG 1 cut(s) 1103
AspS9I GGNCC 2 cut(s) 157, 740
AsuC2I CCSGG 1 cut(s) 616
AsuHPI GGTGA 6 cut(s) 26, 177, 539, 719, 1341, 1374
AvaI CYCGRG 1 cut(s) 935
AvrII CCTAGG 1 cut(s) 1103
BaeGI GKGCMC 1 cut(s) 1432
BaeI ACNNNNGTAYC 2 cut(s) 896, 929
BanII GRGCYC 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 260, 786
BbvI GCAGC 5 cut(s) 337, 973, 995, 1180, 1393
BccI CCATC 5 cut(s) 765, 815, 890, 1001, 1342
BceAI ACGGC 2 cut(s) 338, 504
BciT130I CCWGG 1 cut(s) 738
BcnI CCSGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 1191
BfaI CTAG 3 cut(s) 237, 963, 1104
BfmI CTRYAG 3 cut(s) 534, 1414, 1479
BglII AGATCT 1 cut(s) 1230
BisI GCNGC 5 cut(s) 326, 984, 987, 1169, 1407
BlnI CCTAGG 1 cut(s) 1103
BlsI GCNGC 5 cut(s) 327, 985, 988, 1170, 1408
BmcAI AGTACT 1 cut(s) 1220
Bme1390I CCNGG 2 cut(s) 616, 738
BmeT110I CYCGRG 1 cut(s) 935
BmgT120I GGNCC 2 cut(s) 157, 740
BmrFI CCNGG 2 cut(s) 616, 738
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 3 cut(s) 478, 703, 1333
BmuI ACTGGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 1358, 1390
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 2 cut(s) 627, 1193
BpuMI CCSGG 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 776
BsaI GGTCTC 1 cut(s) 1191
BsaJI CCNNGG 6 cut(s) 37, 508, 520, 614, 737, 1103
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 737, 738, 1340
Bse118I RCCGGY 1 cut(s) 1253
Bse1I ACTGG 3 cut(s) 110, 370, 487
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 6 cut(s) 37, 508, 520, 614, 737, 1103
BseGI GGATG 3 cut(s) 98, 424, 1324
BseLI CCNNNNNNNGG 3 cut(s) 737, 738, 1340
BseMII CTCAG 4 cut(s) 771, 1069, 1113, 1356
BseNI ACTGG 3 cut(s) 110, 370, 487
BseRI GAGGAG 1 cut(s) 1220
BseSI GKGCMC 1 cut(s) 1432
BseXI GCAGC 5 cut(s) 337, 973, 995, 1180, 1393
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 4 cut(s) 158, 519, 742, 959
BsiHKAI GWGCWC 2 cut(s) 260, 786
BsiHKCI CYCGRG 1 cut(s) 935
BsiSI CCGG 2 cut(s) 616, 1254
BslI CCNNNNNNNGG 3 cut(s) 737, 738, 1340
BsmAI GTCTC 1 cut(s) 1191
BsmI GAATGC 1 cut(s) 771
BsnI GGCC 4 cut(s) 158, 519, 742, 959
Bso31I GGTCTC 1 cut(s) 1191
BsoBI CYCGRG 1 cut(s) 935
Bsp1286I GDGCHC 3 cut(s) 260, 786, 1432
Bsp1407I TGTACA 2 cut(s) 95, 284
Bsp143I GATC 4 cut(s) 547, 574, 1036, 1230
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 2 cut(s) 993, 1132
BspANI GGCC 4 cut(s) 158, 519, 742, 959
BspCNI CTCAG 4 cut(s) 772, 1068, 1114, 1357
BspHI TCATGA 2 cut(s) 27, 459
BspPI GGATC 1 cut(s) 1031
BspTNI GGTCTC 1 cut(s) 1191
BsrFI RCCGGY 1 cut(s) 1253
BsrGI TGTACA 2 cut(s) 95, 284
BsrI ACTGG 3 cut(s) 110, 370, 487
BssAI RCCGGY 1 cut(s) 1253
BssECI CCNNGG 6 cut(s) 37, 508, 520, 614, 737, 1103
BssMI GATC 4 cut(s) 547, 574, 1036, 1230
BssNI GRCGYC 1 cut(s) 776
BssT1I CCWWGG 2 cut(s) 508, 1103
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 95, 1415, 1504
Bst6I CTCTTC 1 cut(s) 1194
BstACI GRCGYC 1 cut(s) 776
BstAUI TGTACA 2 cut(s) 95, 284
BstC8I GCNNGC 5 cut(s) 178, 991, 1136, 1212, 1438
BstDEI CTNAG 5 cut(s) 780, 1055, 1085, 1122, 1365
BstDSI CCRYGG 3 cut(s) 37, 508, 520
BstF5I GGATG 3 cut(s) 98, 424, 1324
BstKTI GATC 4 cut(s) 550, 577, 1039, 1233
BstMAI GTCTC 1 cut(s) 1191
BstMBI GATC 4 cut(s) 547, 574, 1036, 1230
BstMWI GCNNNNNNNGC 5 cut(s) 775, 790, 833, 1168, 1259
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 5 cut(s) 23, 678, 1138, 1214, 1440
BstSCI CCNGG 2 cut(s) 614, 736
BstSFI CTRYAG 3 cut(s) 534, 1414, 1479
BstSLI GKGCMC 1 cut(s) 1432
BstV1I GCAGC 5 cut(s) 337, 973, 995, 1180, 1393
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 1230
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 1 cut(s) 1230
BsuRI GGCC 4 cut(s) 158, 519, 742, 959
BtgI CCRYGG 3 cut(s) 37, 508, 520
BtgZI GCGATG 2 cut(s) 784, 1020
BtsCI GGATG 3 cut(s) 98, 424, 1324
BtsIMutI CAGTG 4 cut(s) 159, 1119, 1289, 1391
Cac8I GCNNGC 5 cut(s) 178, 991, 1136, 1212, 1438
CciI TCATGA 2 cut(s) 27, 459
Cfr10I RCCGGY 1 cut(s) 1253
Cfr13I GGNCC 2 cut(s) 157, 740
CseI GACGC 1 cut(s) 784
Csp6I GTAC 5 cut(s) 96, 113, 285, 913, 1219
CspCI CAANNNNNGTGG 2 cut(s) 1263, 1298
CviQI GTAC 5 cut(s) 96, 113, 285, 913, 1219
DdeI CTNAG 5 cut(s) 780, 1055, 1085, 1122, 1365
DpnI GATC 4 cut(s) 549, 576, 1038, 1232
DpnII GATC 4 cut(s) 547, 574, 1036, 1230
DraI TTTAAA 1 cut(s) 855
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 1194
EarI CTCTTC 1 cut(s) 1194
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 2 cut(s) 508, 1103
Eco147I AGGCCT 1 cut(s) 959
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 1 cut(s) 1191
Eco53kI GAGCTC 1 cut(s) 784
Eco57I CTGAAG 3 cut(s) 990, 1175, 1415
Eco88I CYCGRG 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 2 cut(s) 508, 1103
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 2 cut(s) 508, 1103
Fnu4HI GCNGC 5 cut(s) 326, 984, 987, 1169, 1407
FokI GGATG 3 cut(s) 85, 431, 1311
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 5 cut(s) 326, 984, 987, 1169, 1407
FspBI CTAG 3 cut(s) 237, 963, 1104
GluI GCNGC 5 cut(s) 326, 984, 987, 1169, 1407
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 4 cut(s) 158, 519, 742, 959
HapII CCGG 2 cut(s) 616, 1254
HgaI GACGC 1 cut(s) 784
Hin1I GRCGYC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HindIII AAGCTT 2 cut(s) 815, 1448
HpaI GTTAAC 1 cut(s) 1030
HpaII CCGG 2 cut(s) 616, 1254
HphI GGTGA 6 cut(s) 26, 177, 539, 719, 1341, 1374
Hpy166II GTNNAC 1 cut(s) 1030
Hpy188I TCNGA 9 cut(s) 66, 139, 319, 451, 496, 574, 970, 1152, 1372
Hpy188III TCNNGA 2 cut(s) 28, 460
Hpy8I GTNNAC 1 cut(s) 1030
HpyAV CCTTC 6 cut(s) 134, 457, 753, 949, 1338, 1362
HpyCH4III ACNGT 3 cut(s) 95, 1415, 1504
HpyCH4IV ACGT 1 cut(s) 1032
HpyCH4V TGCA 8 cut(s) 752, 989, 1070, 1138, 1162, 1214, 1440, 1499
HpyF10VI GCNNNNNNNGC 5 cut(s) 775, 790, 833, 1168, 1259
HpyF3I CTNAG 5 cut(s) 780, 1055, 1085, 1122, 1365
HpySE526I ACGT 1 cut(s) 1032
Hsp92I GRCGYC 1 cut(s) 776
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 4 cut(s) 547, 574, 1036, 1230
LmnI GCTCC 3 cut(s) 789, 1107, 1207
Lsp1109I GCAGC 5 cut(s) 337, 973, 995, 1180, 1393
LweI GCATC 3 cut(s) 478, 703, 1333
MaeI CTAG 3 cut(s) 237, 963, 1104
MaeII ACGT 1 cut(s) 1032
MaeIII GTNAC 9 cut(s) 32, 527, 725, 1058, 1263, 1287, 1389, 1418, 1504
MalI GATC 4 cut(s) 549, 576, 1038, 1232
MboI GATC 4 cut(s) 547, 574, 1036, 1230
MfeI CAATTG 1 cut(s) 551
MflI RGATCY 1 cut(s) 1230
MhlI GDGCHC 3 cut(s) 260, 786, 1432
MluCI AATT 6 cut(s) 475, 513, 551, 636, 668, 1300
MlyI GAGTC 6 cut(s) 40, 51, 95, 1367, 1376, 1415
Mph1103I ATGCAT 1 cut(s) 1072
MseI TTAA 7 cut(s) 410, 474, 671, 854, 878, 1029, 1308
MslI CAYNNNNRTG 2 cut(s) 1139, 1435
MspA1I CMGCKG 2 cut(s) 986, 1340
MspI CCGG 2 cut(s) 616, 1254
MspR9I CCNGG 2 cut(s) 616, 738
MunI CAATTG 1 cut(s) 551
Mva1269I GAATGC 1 cut(s) 771
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 5 cut(s) 775, 790, 833, 1168, 1259
NciI CCSGG 1 cut(s) 616
NcoI CCATGG 1 cut(s) 508
NdeII GATC 4 cut(s) 547, 574, 1036, 1230
NmuCI GTSAC 6 cut(s) 32, 527, 725, 1287, 1389, 1418
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 5 cut(s) 23, 678, 1138, 1214, 1440
PaeI GCATGC 3 cut(s) 1138, 1214, 1440
PagI TCATGA 2 cut(s) 27, 459
PceI AGGCCT 1 cut(s) 959
PciI ACATGT 2 cut(s) 19, 674
PctI GAATGC 1 cut(s) 771
PfeI GAWTC 5 cut(s) 78, 134, 203, 233, 389
PflMI CCANNNNNTGG 1 cut(s) 1340
PkrI GCNGC 5 cut(s) 327, 985, 988, 1170, 1408
PleI GAGTC 6 cut(s) 39, 50, 94, 1367, 1375, 1415
PpsI GAGTC 6 cut(s) 39, 50, 94, 1367, 1375, 1415
PscI ACATGT 2 cut(s) 19, 674
Psp124BI GAGCTC 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 1032
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspPI GGNCC 2 cut(s) 157, 740
PsuI RGATCY 1 cut(s) 1230
PvuII CAGCTG 2 cut(s) 986, 1340
RsaI GTAC 5 cut(s) 97, 114, 286, 914, 1220
RsaNI GTAC 5 cut(s) 96, 113, 285, 913, 1219
RseI CAYNNNNRTG 2 cut(s) 1139, 1435
SacI GAGCTC 1 cut(s) 786
SaqAI TTAA 7 cut(s) 410, 474, 671, 854, 878, 1029, 1308
SatI GCNGC 5 cut(s) 326, 984, 987, 1169, 1407
Sau3AI GATC 4 cut(s) 547, 574, 1036, 1230
Sau96I GGNCC 2 cut(s) 157, 740
ScaI AGTACT 1 cut(s) 1220
SchI GAGTC 6 cut(s) 40, 51, 95, 1367, 1376, 1415
ScrFI CCNGG 2 cut(s) 616, 738
SduI GDGCHC 3 cut(s) 260, 786, 1432
SfaNI GCATC 3 cut(s) 478, 703, 1333
SfcI CTRYAG 3 cut(s) 534, 1414, 1479
SmiMI CAYNNNNRTG 2 cut(s) 1139, 1435
SmlI CTYRAG 2 cut(s) 642, 1172
SmoI CTYRAG 2 cut(s) 642, 1172
SphI GCATGC 3 cut(s) 1138, 1214, 1440
Sse9I AATT 6 cut(s) 475, 513, 551, 636, 668, 1300
SseBI AGGCCT 1 cut(s) 959
SsiI CCGC 2 cut(s) 993, 1132
SspMI CTAG 3 cut(s) 237, 963, 1104
SstI GAGCTC 1 cut(s) 786
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 2 cut(s) 614, 736
StyI CCWWGG 2 cut(s) 508, 1103
TaaI ACNGT 3 cut(s) 95, 1415, 1504
TaiI ACGT 1 cut(s) 1035
TaqI TCGA 3 cut(s) 311, 653, 695
TasI AATT 6 cut(s) 475, 513, 551, 636, 668, 1300
TatI WGTACW 4 cut(s) 95, 112, 284, 1218
TfiI GAWTC 5 cut(s) 78, 134, 203, 233, 389
Tru1I TTAA 7 cut(s) 410, 474, 671, 854, 878, 1029, 1308
Tru9I TTAA 7 cut(s) 410, 474, 671, 854, 878, 1029, 1308
TscAI CASTG 4 cut(s) 159, 1126, 1296, 1398
TseFI GTSAC 6 cut(s) 32, 527, 725, 1287, 1389, 1418
TseI GCWGC 5 cut(s) 325, 983, 986, 1168, 1406
Tsp45I GTSAC 6 cut(s) 32, 527, 725, 1287, 1389, 1418
TspGWI ACGGA 2 cut(s) 54, 211
TspRI CASTG 4 cut(s) 159, 1126, 1296, 1398
Van91I CCANNNNNTGG 1 cut(s) 1340
XapI RAATTY 1 cut(s) 636
XceI RCATGY 5 cut(s) 23, 678, 1138, 1214, 1440
XcmI CCANNNNNNNNNTGG 1 cut(s) 768
XmaJI CCTAGG 1 cut(s) 1103
XspI CTAG 3 cut(s) 237, 963, 1104
ZrmI AGTACT 1 cut(s) 1220
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.