Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010493

Physical Location & Seq

Genomic Coordinates Reverse (-)

4235950 .. 4240116

Gene Structure 4167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGCGCAATTGCTCTCATTTCGCGTTTATCTGTCTGCTGAAACGCAGAAAGCTTCTCCAGGGTCGTTTAAGCGAACCCAAAAGACTCGAAAACCATTTTCGCCTGATAGAAGAGGTCCGGTGGCTCCGTCGCGGAAATCTCAGAATCTGAATTTGGAAGTTTCTCCACATAGAGCTGTATCTGCAGTCAGATTGATGAGAATTGAGTACGGTGGTGCTTTTGCTGATCTTTTGAATGAGAAAGGAAAAGGGTCTGGGAGCAATGAGATGAGTTATGTTGAAAGGACTATCGGTTTTCGGACTCGCGATTTGGATGACCGAGATCTTAGACTGGTTACAGATGTTGTTGGAGGAACAATACGGTGGAGGAGGTATCTTGATCATTTGATTGGTTCCCTTTGCCACAACGAAAGAACATTTCGAAATATGGAACCTCTTCTATTGCAGATTCTCCGCATTGGTGTATATGAGATCATTAAGCGTGATATGCCGCCATATGCTGTTGTTGATGAGAACGTAAGGCTTGCAAAGGTTGCCCTCAGACCTGGTGCTGGAGATTTTGTCAATGGGATTCTTCGTAAACTAGTCTCTCTTAAGGAAAAAGATGCCCTTCCATTACCCAAAGTGGAAGGGGATGATCGTGCACAGGCACGTGCACTTGCTACTCTTCATTCACATCCCGTTTGGATGGTTAGACGATGGGTAAAGTATCTTGGGTTGGATGAAGCCACAAAGCTAATGATATGGAATAACAATGATCCTGGATTTAGCTTAAGGGCCAATACGGGAAGGGACATTACAAGAGCAGACCTTGTGGAGCGTCTAAACAGTTTAAAGGTTCCACACGAGCTATCCTTACATTTGGAGGAATTTGTCCGCATCAAAACAGGCTTGCAGACCGTTGTGCAAGCTGGTTTACTCAAAGAAGGCATCTGTTCTGTTCAGGACGAGAGTGCAGGACTAATAGTCTCAGTGGTGAAACCTCAGCCAGGCGAGAGGATAATGGATGCATGTGCTGCTCCTGGAGGAAAGACCCTATTCATGGCATCTTGCTTGAAAGGCCAAGGTATGATATATGCTATGGATGTGAATGAAGGACGGCTAAGAATTCTTGGTGAGACAGCAAAATCACACCAAGTTGATGGACTTATCACAACCATTCATTCTGATCTTCGTGTCTTTGCTGAAACCAATGAAGTACAATATGACAAAGTTTTGCTTGATGCCCCGTGTTCTGGACTCGGCGTCCTCTCCAAGAGAGCGGATTTGCGCTGGAACCGTAAACTTGAGGACATGTTAGAGCTCACTAAACTGCAGGATGAGCTTCTTGATTCTGCCTCCAAACTGGTGAAGCACGGTGGGGTGTTGGTATACAGTACTTGCTCCATAGACCCCGAGGAAAATGAAGGAAGGGTCGAAGCATTTCTCTTAAGACATCCTGAATTCACCATAGATCCAGTAACCAGTTTTGTACCGTCGAGTTTTGTAACCTCACAAGGCTTCTTTTTATCAAACCCAGTGAAACACTCACTAGATGGAGCATTTGCAGCTCGTCTGGTTCGAGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

523

Amino Acids

58.34

Weight (kDa)

9.12

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NusB	PF01029	87 - 195	4.9e-24	NusB family
RsmF-B_ferredox	PF22458	226 - 296	2.1e-08	Methyltr_RsmF/B-like, ferredoxin-like domain
Methyltr_RsmB-F	PF01189	325 - 519	2.3e-52	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13180
fragaria_vesca	FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g43190
malus_domestica	MD03G1027000.v1.1
prunus_persica	Prupe.6G024300_v2.0.a1 Prupe.6G024300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077011
rosa_multiflora	Rmu_sc0003323.1_g000006 Rmu_sc0038050.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005130
rosa_rugosa	Rorug05G0450200 Rorug05G0450300.1
rosa_samantha	Rh5AG504900 Rh5BG526600 Rh5CG550400 Rh5DG538800
rosa_wichuraiana	Rw5G047150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1262
AccI	GTMKAC	1 cut(s)	1371
AccII	CGCG	3 cut(s)	24, 133, 306
AciI	CCGC	5 cut(s)	133, 454, 491, 877, 1262
AclWI	GGATC	2 cut(s)	752, 1448
AcsI	RAATTY	4 cut(s)	151, 869, 1107, 1442
AcvI	CACGTG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	1245
AfaI	GTAC	4 cut(s)	209, 1200, 1378, 1473
AfiI	CCNNNNNNNGG	4 cut(s)	551, 989, 1042, 1235
AflII	CTTAAG	3 cut(s)	593, 772, 1429
AflIII	ACRYGT	1 cut(s)	1293
AgsI	TTSAA	3 cut(s)	235, 281, 1057
AhdI	GACNNNNNGTC	2 cut(s)	965, 1244
AhlI	ACTAGT	1 cut(s)	583
AjnI	CCWGG	5 cut(s)	58, 544, 760, 988, 1021
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	9 cut(s)	53, 176, 736, 771, 850, 911, 1303, 1324, 1550
AluI	AGCT	9 cut(s)	53, 176, 736, 771, 850, 911, 1303, 1324, 1550
Alw21I	GWGCWC	3 cut(s)	646, 658, 1305
Alw26I	GTCTC	3 cut(s)	592, 973, 1112
Alw44I	GTGCAC	2 cut(s)	642, 654
AlwI	GGATC	2 cut(s)	752, 1448
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	1394
AoxI	GGCC	2 cut(s)	777, 1060
ApaLI	GTGCAC	2 cut(s)	642, 654
ApeKI	GCWGC	2 cut(s)	1016, 1547
ApoI	RAATTY	4 cut(s)	151, 869, 1107, 1442
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
Asp700I	GAANNNNTTC	2 cut(s)	435, 1422
AspLEI	GCGC	2 cut(s)	7, 1272
AspS9I	GGNCC	2 cut(s)	116, 777
AsuHPI	GGTGA	4 cut(s)	988, 1127, 1360, 1438
AsuII	TTCGAA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	1394
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	2 cut(s)	646, 658
BanII	GRGCYC	1 cut(s)	1305
BarI	GAAGNNNNNNTAC	2 cut(s)	781, 813
BauI	CACGAG	1 cut(s)	845
BbrPI	CACGTG	1 cut(s)	653
Bbv12I	GWGCWC	3 cut(s)	646, 658, 1305
BbvCI	CCTCAGC	1 cut(s)	984
BbvI	GCAGC	2 cut(s)	1003, 1559
BccI	CCATC	4 cut(s)	682, 693, 1136, 1529
BceAI	ACGGC	1 cut(s)	1115
BciT130I	CCWGG	5 cut(s)	60, 546, 762, 990, 1023
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	3 cut(s)	592, 973, 1112
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	584, 1532
BfmI	CTRYAG	2 cut(s)	183, 1313
BfrI	CTTAAG	3 cut(s)	593, 772, 1429
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	3 cut(s)	491, 1017, 1548
BlsI	GCNGC	3 cut(s)	492, 1018, 1549
BmcAI	AGTACT	1 cut(s)	1378
Bme1390I	CCNGG	5 cut(s)	60, 546, 762, 990, 1023
Bme18I	GGWCC	1 cut(s)	116
BmeRI	GACNNNNNGTC	2 cut(s)	965, 1244
BmeT110I	CYCGRG	1 cut(s)	1394
BmgT120I	GGNCC	2 cut(s)	116, 777
BmiI	GGNNCC	5 cut(s)	126, 394, 432, 840, 1277
BmrFI	CCNGG	5 cut(s)	60, 546, 762, 990, 1023
BmrI	ACTGGG	1 cut(s)	1511
BmsI	GCATC	6 cut(s)	595, 888, 939, 997, 1055, 1213
BmuI	ACTGGG	1 cut(s)	1511
BpmI	CTGGAG	3 cut(s)	42, 573, 1044
Bpu10I	CCTNAGC	1 cut(s)	984
Bpu14I	TTCGAA	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	1307
BsaAI	YACGTR	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	1245
BsaJI	CCNNGG	3 cut(s)	59, 1063, 1395
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 989, 1042, 1235
Bse1I	ACTGG	5 cut(s)	336, 1350, 1457, 1464, 1517
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	5 cut(s)	60, 546, 762, 990, 1023
BseDI	CCNNGG	3 cut(s)	59, 1063, 1395
BseGI	GGATG	9 cut(s)	319, 640, 676, 693, 727, 1012, 1090, 1324, 1435
BseLI	CCNNNNNNNGG	4 cut(s)	551, 989, 1042, 1235
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	4 cut(s)	155, 553, 984, 998
BseNI	ACTGG	5 cut(s)	336, 1350, 1457, 1464, 1517
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	2 cut(s)	646, 658
BseXI	GCAGC	2 cut(s)	1003, 1559
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	3 cut(s)	24, 133, 306
BshFI	GGCC	2 cut(s)	779, 1062
BsiHKAI	GWGCWC	3 cut(s)	646, 658, 1305
BsiHKCI	CYCGRG	1 cut(s)	1394
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	4 cut(s)	551, 989, 1042, 1235
BsmAI	GTCTC	3 cut(s)	592, 973, 1112
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	2 cut(s)	779, 1062
BsoBI	CYCGRG	1 cut(s)	1394
Bsp119I	TTCGAA	1 cut(s)	421
Bsp1286I	GDGCHC	3 cut(s)	646, 658, 1305
Bsp143I	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	5 cut(s)	133, 454, 491, 877, 1262
BspANI	GGCC	2 cut(s)	779, 1062
BspCNI	CTCAG	4 cut(s)	154, 552, 983, 997
BspFNI	CGCG	3 cut(s)	24, 133, 306
BspLI	GGNNCC	5 cut(s)	126, 394, 432, 840, 1277
BspMAI	CTGCAG	2 cut(s)	187, 1317
BspPI	GGATC	2 cut(s)	752, 1448
BspT104I	TTCGAA	1 cut(s)	421
BspTI	CTTAAG	3 cut(s)	593, 772, 1429
BsrBI	CCGCTC	1 cut(s)	1262
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	5 cut(s)	336, 1350, 1457, 1464, 1517
BssECI	CCNNGG	3 cut(s)	59, 1063, 1395
BssMI	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
BssNAI	GTATAC	1 cut(s)	1372
BssNI	GRCGYC	1 cut(s)	1245
BssSI	CACGAG	1 cut(s)	845
BssT1I	CCWWGG	1 cut(s)	1063
Bst1107I	GTATAC	1 cut(s)	1372
Bst2BI	CACGAG	1 cut(s)	845
Bst2UI	CCWGG	5 cut(s)	60, 546, 762, 990, 1023
Bst4CI	ACNGT	8 cut(s)	212, 363, 830, 901, 1280, 1358, 1376, 1476
Bst6I	CTCTTC	3 cut(s)	106, 441, 672
BstACI	GRCGYC	1 cut(s)	1245
BstAFI	CTTAAG	3 cut(s)	593, 772, 1429
BstAPI	GCANNNNNTGC	2 cut(s)	533, 1016
BstBAI	YACGTR	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	525, 893, 909
BstDEI	CTNAG	6 cut(s)	141, 326, 539, 970, 984, 1103
BstENI	CCTNNNNNAGG	1 cut(s)	987
BstF5I	GGATG	9 cut(s)	319, 640, 676, 693, 727, 1012, 1090, 1324, 1435
BstFNI	CGCG	3 cut(s)	24, 133, 306
BstHHI	GCGC	2 cut(s)	7, 1272
BstKTI	GATC	8 cut(s)	229, 325, 382, 474, 640, 760, 1171, 1456
BstMAI	GTCTC	3 cut(s)	592, 973, 1112
BstMBI	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 487, 533, 1016, 1059, 1321, 1547
BstNI	CCWGG	5 cut(s)	60, 546, 762, 990, 1023
BstNSI	RCATGY	2 cut(s)	1014, 1297
BstSCI	CCNGG	5 cut(s)	58, 544, 760, 988, 1021
BstSFI	CTRYAG	2 cut(s)	183, 1313
BstSLI	GKGCMC	2 cut(s)	646, 658
BstUI	CGCG	3 cut(s)	24, 133, 306
BstV1I	GCAGC	2 cut(s)	1003, 1559
BstX2I	RGATCY	2 cut(s)	322, 1453
BstXI	CCANNNNNNTGG	1 cut(s)	1142
BstYI	RGATCY	2 cut(s)	322, 1453
BstZ17I	GTATAC	1 cut(s)	1372
BsuRI	GGCC	2 cut(s)	779, 1062
BtsCI	GGATG	9 cut(s)	319, 640, 676, 693, 727, 1012, 1090, 1324, 1435
BtsIMutI	CAGTG	2 cut(s)	978, 1524
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	525, 893, 909
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	2 cut(s)	7, 1272
Cfr13I	GGNCC	2 cut(s)	116, 777
CseI	GACGC	2 cut(s)	809, 1234
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	4 cut(s)	208, 1199, 1377, 1472
CviAII	CATG	3 cut(s)	1011, 1042, 1294
CviQI	GTAC	4 cut(s)	208, 1199, 1377, 1472
DdeI	CTNAG	6 cut(s)	141, 326, 539, 970, 984, 1103
DpnI	GATC	8 cut(s)	228, 324, 381, 473, 639, 759, 1170, 1455
DpnII	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
DraI	TTTAAA	1 cut(s)	834
DriI	GACNNNNNGTC	2 cut(s)	965, 1244
Eam1104I	CTCTTC	3 cut(s)	106, 441, 672
Eam1105I	GACNNNNNGTC	2 cut(s)	965, 1244
EarI	CTCTTC	3 cut(s)	106, 441, 672
Ecl136II	GAGCTC	1 cut(s)	1303
Eco130I	CCWWGG	1 cut(s)	1063
Eco24I	GRGCYC	1 cut(s)	1305
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	1303
Eco72I	CACGTG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	1394
EcoICRI	GAGCTC	1 cut(s)	1303
EcoNI	CCTNNNNNAGG	1 cut(s)	987
EcoRI	GAATTC	2 cut(s)	1107, 1442
EcoRII	CCWGG	5 cut(s)	58, 544, 760, 988, 1021
EcoT14I	CCWWGG	1 cut(s)	1063
EcoT22I	ATGCAT	1 cut(s)	1012
EcoT38I	GRGCYC	1 cut(s)	1305
ErhI	CCWWGG	1 cut(s)	1063
FaeI	CATG	3 cut(s)	1014, 1045, 1297
FalI	AAGNNNNNCTT	4 cut(s)	594, 626, 1203, 1235
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	3 cut(s)	1010, 1041, 1293
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	1371
Fnu4HI	GCNGC	3 cut(s)	491, 1017, 1548
FokI	GGATG	9 cut(s)	326, 647, 663, 700, 734, 1019, 1097, 1331, 1422
FriOI	GRGCYC	1 cut(s)	1305
Fsp4HI	GCNGC	3 cut(s)	491, 1017, 1548
FspBI	CTAG	2 cut(s)	584, 1532
GlaI	GCGC	2 cut(s)	6, 1271
GluI	GCNGC	3 cut(s)	491, 1017, 1548
GsuI	CTGGAG	3 cut(s)	42, 573, 1044
HaeIII	GGCC	2 cut(s)	779, 1062
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	2 cut(s)	809, 1234
HhaI	GCGC	2 cut(s)	7, 1272
Hin1I	GRCGYC	1 cut(s)	1245
Hin1II	CATG	3 cut(s)	1014, 1045, 1297
Hin6I	GCGC	2 cut(s)	5, 1270
HinP1I	GCGC	2 cut(s)	5, 1270
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	7 cut(s)	85, 145, 301, 448, 571, 1239, 1331
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	4 cut(s)	988, 1127, 1360, 1438
Hpy166II	GTNNAC	6 cut(s)	581, 644, 656, 917, 1283, 1372
Hpy188I	TCNGA	6 cut(s)	144, 150, 191, 300, 542, 1168
Hpy188III	TCNNGA	6 cut(s)	305, 377, 944, 1236, 1328, 1439
Hpy8I	GTNNAC	6 cut(s)	581, 644, 656, 917, 1283, 1372
Hpy99I	CGWCG	2 cut(s)	133, 1480
HpyAV	CCTTC	7 cut(s)	620, 623, 783, 920, 1088, 1400, 1404
HpyCH4III	ACNGT	8 cut(s)	212, 363, 830, 901, 1280, 1358, 1376, 1476
HpyCH4IV	ACGT	2 cut(s)	516, 652
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 487, 533, 1016, 1059, 1321, 1547
HpyF3I	CTNAG	6 cut(s)	141, 326, 539, 970, 984, 1103
HpySE526I	ACGT	2 cut(s)	516, 652
Hsp92I	GRCGYC	1 cut(s)	1245
Hsp92II	CATG	3 cut(s)	1014, 1045, 1297
HspAI	GCGC	2 cut(s)	5, 1270
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
LmnI	GCTCC	6 cut(s)	130, 258, 817, 1024, 1388, 1538
Lsp1109I	GCAGC	2 cut(s)	1003, 1559
LweI	GCATC	6 cut(s)	595, 888, 939, 997, 1055, 1213
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	2 cut(s)	584, 1532
MaeII	ACGT	2 cut(s)	516, 652
MaeIII	GTNAC	3 cut(s)	334, 1459, 1486
MalI	GATC	8 cut(s)	228, 324, 381, 473, 639, 759, 1170, 1455
MbiI	CCGCTC	1 cut(s)	1262
MboI	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
MboII	GAAGA	5 cut(s)	123, 428, 566, 659, 1163
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	2 cut(s)	322, 1453
MhlI	GDGCHC	3 cut(s)	646, 658, 1305
MluCI	AATT	6 cut(s)	8, 151, 201, 869, 1107, 1442
MlyI	GAGTC	3 cut(s)	79, 295, 1233
MmeI	TCCRAC	2 cut(s)	328, 699
Mph1103I	ATGCAT	1 cut(s)	1012
MroXI	GAANNNNTTC	2 cut(s)	435, 1422
MseI	TTAA	6 cut(s)	69, 477, 594, 773, 833, 1430
MspCI	CTTAAG	3 cut(s)	593, 772, 1429
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	5 cut(s)	60, 546, 762, 990, 1023
MunI	CAATTG	1 cut(s)	8
MvaI	CCWGG	5 cut(s)	60, 546, 762, 990, 1023
MvnI	CGCG	3 cut(s)	24, 133, 306
MwoI	GCNNNNNNNGC	7 cut(s)	182, 487, 533, 1016, 1059, 1321, 1547
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
NlaIII	CATG	3 cut(s)	1014, 1045, 1297
NlaIV	GGNNCC	5 cut(s)	126, 394, 432, 840, 1277
NmeAIII	GCCGAG	1 cut(s)	1221
NruI	TCGCGA	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	1012
NspI	RCATGY	2 cut(s)	1014, 1297
NspV	TTCGAA	1 cut(s)	421
PciI	ACATGT	1 cut(s)	1293
PcsI	WCGNNNNNNNCGW	1 cut(s)	1558
PdmI	GAANNNNTTC	2 cut(s)	435, 1422
PfeI	GAWTC	4 cut(s)	145, 448, 571, 1331
PfoI	TCCNGGA	2 cut(s)	760, 1021
PkrI	GCNGC	3 cut(s)	492, 1018, 1549
PleI	GAGTC	3 cut(s)	79, 295, 1233
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	3 cut(s)	79, 295, 1233
Ppu21I	YACGTR	1 cut(s)	653
PscI	ACATGT	1 cut(s)	1293
Psp124BI	GAGCTC	1 cut(s)	1305
Psp6I	CCWGG	5 cut(s)	58, 544, 760, 988, 1021
PspCI	CACGTG	1 cut(s)	653
PspGI	CCWGG	5 cut(s)	58, 544, 760, 988, 1021
PspN4I	GGNNCC	5 cut(s)	126, 394, 432, 840, 1277
PspPI	GGNCC	2 cut(s)	116, 777
PstI	CTGCAG	2 cut(s)	187, 1317
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	322, 1453
RruI	TCGCGA	1 cut(s)	306
RsaI	GTAC	4 cut(s)	209, 1200, 1378, 1473
RsaNI	GTAC	4 cut(s)	208, 1199, 1377, 1472
SacI	GAGCTC	1 cut(s)	1305
SaqAI	TTAA	6 cut(s)	69, 477, 594, 773, 833, 1430
SatI	GCNGC	3 cut(s)	491, 1017, 1548
Sau3AI	GATC	8 cut(s)	226, 322, 379, 471, 637, 757, 1168, 1453
Sau96I	GGNCC	2 cut(s)	116, 777
ScaI	AGTACT	1 cut(s)	1378
SchI	GAGTC	3 cut(s)	79, 295, 1233
ScrFI	CCNGG	5 cut(s)	60, 546, 762, 990, 1023
SduI	GDGCHC	3 cut(s)	646, 658, 1305
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	6 cut(s)	595, 888, 939, 997, 1055, 1213
SfcI	CTRYAG	2 cut(s)	183, 1313
SfuI	TTCGAA	1 cut(s)	421
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	4 cut(s)	593, 772, 1286, 1429
SmoI	CTYRAG	4 cut(s)	593, 772, 1286, 1429
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	6 cut(s)	8, 151, 201, 869, 1107, 1442
SsiI	CCGC	5 cut(s)	133, 454, 491, 877, 1262
SspMI	CTAG	2 cut(s)	584, 1532
SstI	GAGCTC	1 cut(s)	1305
StyD4I	CCNGG	5 cut(s)	58, 544, 760, 988, 1021
StyI	CCWWGG	1 cut(s)	1063
TaaI	ACNGT	8 cut(s)	212, 363, 830, 901, 1280, 1358, 1376, 1476
TaiI	ACGT	2 cut(s)	519, 655
TaqI	TCGA	5 cut(s)	88, 421, 1416, 1478, 1561
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	6 cut(s)	8, 151, 201, 869, 1107, 1442
TatI	WGTACW	2 cut(s)	1198, 1376
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	4 cut(s)	145, 448, 571, 1331
Tru1I	TTAA	6 cut(s)	69, 477, 594, 773, 833, 1430
Tru9I	TTAA	6 cut(s)	69, 477, 594, 773, 833, 1430
TscAI	CASTG	2 cut(s)	978, 1524
TseI	GCWGC	2 cut(s)	1016, 1547
TspDTI	ATGAA	7 cut(s)	659, 738, 1030, 1107, 1151, 1209, 1419
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	978, 1524
Vha464I	CTTAAG	3 cut(s)	593, 772, 1429
VneI	GTGCAC	2 cut(s)	642, 654
VpaK11BI	GGWCC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	987
XapI	RAATTY	4 cut(s)	151, 869, 1107, 1442
XceI	RCATGY	2 cut(s)	1014, 1297
XmiI	GTMKAC	1 cut(s)	1371
XmnI	GAANNNNTTC	2 cut(s)	435, 1422
XspI	CTAG	2 cut(s)	584, 1532
ZrmI	AGTACT	1 cut(s)	1378
Zsp2I	ATGCAT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.