Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010493

Physical Location & Seq

Genomic Coordinates Reverse (-)

2167368 .. 2172958

Gene Structure 5591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1027000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGGCGCTCGTACTCTCTCTCCGCCTGCTTCTCTCTGCGGACACCAACAGACCTTCTTCTTCTTCTTCTTCTTCTTCCCCCAAGTCACTCAAGTTTGATAAGAGAACAAAAACATCCGTTTCTACTCCTAGAAAAGGTAGTTTCAATCCCTCACACAAAATCCAGAAGGTGAATTTGGAGGTTTCTCCTCACAGAGCTGTTTCGGCGGTGAGATTGATGAGAATAGAGATGGGAGGTGCTTTTGCTGATCTTCTCAATGAGAAAGGGAAAGGTTCTGGTGAAAATGAGATGGGATATGTTGGAAGAACTCTTGGGTTTCGTACACGGGATTTAGAGGATCGTGATCTTAGACTGGTCACTGATATTGTTGGCGGCACTATCCGTTGGAAGAGATATCTTGATCATTTGATAAGTTCACTGTGCAATGATGGAAACACATTTGCTAGGATGGAACCACTTCTTTTACAGATTCTTCGAATTGGTTTCTATGAGATTGTTAAGCTGGATATGCCACCATATGCTGTTGTAGATGAGAATGTGAGGCTTGCAAAAGTTGCCCTTAGACATGGTGCTGGCAACTTGGTTAATGCGATTCTCCGGAAGCTTGTTCTTCTCATGGAAACCGATTCTCTTCCTCTACCCAAATTGGAGGGCGATGACCGCGCGCAAGCACGTGCTCTTGCCACTTTGCACTCTCATCCTGTTTGGATGGTGAGGCGATGGACAAAGCATCTTGGACAAGAAGAAGCAATTAGATTGATGATGTGGAATAACAGTGATCCTAGTTTCAGCTTAAGGGCAAACAGCGGGAAAGGTGTCTCAAGAGCTGACCTTGTGACCAAGCTTAATGTCTTAAAGGTTTCGCATGAGCTCTCTTCGCATTTGAATGATTTTGTCCGTATGAAAACAGGGTTGCAGTTGGTCATACAAGCGGGTCTATTGAAAGAAGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCAGTTGTAGATCCTCAACCGGGTGAAAGCATTATTGATTGTTGTGCTGCTCCTGGAGGAAAGACGCTTTACATGGCATCCCTTTTGAGTGGCCAAGGTGTGGTATATGCAGTTGACATAAATGAAGGCCGGTTGAGAATCCTCAAAGAGACGGCTAAGTTGCACCAAGTAGATGGTGTGATCACCAATGTGCATTCGGATATCCGTACTTTTTCTGATAACAATAGTACGAAGTGTGATAAAGTTCTGTTGGATGCTCCATGTTCTGGACTGGGTGTTCTCTCGAAGAGAGCAGACTTGCGTTGGAACAGGAAATTAGAGGATATGGAGCAGCTGAAAAGTTTGCAGGATGAGCTTCTCGATGCAGCTTCTCTATTGGTCAAGCCTGGTGGTGTTTTGGTATACAGTACCTGCTCTATAGATCCTGAAGAGAATGAAGAGAGGATAGCTGCATTTCTTCTCAGGCATCCGGAATTTCAAATAGATCCCGTTGGCAGATACGTTCCACCTGAATTTGTAACAGAACAGGGTTTCTATTTCTCCAACCCTGTAAAGCATTCCCTCGATGGGGCATTCGCTGCTCGTTCATTTGAAAGAATTTCTTCGGAGCTAGAACTCCTGCGAATTCAGTTCGAGTTCTTTGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

547

Amino Acids

60.63

Weight (kDa)

8.34

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NusB	PF01029	99 - 202	3.4e-23	NusB family
RsmF-B_ferredox	PF22458	233 - 303	3.1e-08	Methyltr_RsmF/B-like, ferredoxin-like domain
Methyltr_RsmB-F	PF01189	332 - 525	6.3e-52	16S rRNA methyltransferase RsmB/F
TRM5-TYW2_MTfase	PF02475	336 - 420	1.6e-06	TRM5/TYW2 methyltransferase domain
FtsJ	PF01728	337 - 472	2.1e-08	FtsJ-like methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13180
fragaria_vesca	FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g43190
malus_domestica	MD03G1027000.v1.1
prunus_persica	Prupe.6G024300_v2.0.a1 Prupe.6G024300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077011
rosa_multiflora	Rmu_sc0003323.1_g000006 Rmu_sc0038050.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005130
rosa_rugosa	Rorug05G0450200 Rorug05G0450300.1
rosa_samantha	Rh5AG504900 Rh5BG526600 Rh5CG550400 Rh5DG538800
rosa_wichuraiana	Rw5G047150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	968, 1409
AccB7I	CCANNNNNTGG	2 cut(s)	1090, 1256
AccI	GTMKAC	1 cut(s)	1392
AccII	CGCG	2 cut(s)	663, 665
AccIII	TCCGGA	2 cut(s)	597, 1459
AciI	CCGC	7 cut(s)	22, 38, 206, 372, 661, 807, 932
AclWI	GGATC	5 cut(s)	345, 773, 995, 1406, 1469
AcoI	YGGCCR	1 cut(s)	1081
AcsI	RAATTY	5 cut(s)	172, 1463, 1502, 1587, 1614
AcuI	CTGAAG	1 cut(s)	1437
AcvI	CACGTG	1 cut(s)	674
AfaI	GTAC	5 cut(s)	12, 322, 1198, 1219, 1399
AfiI	CCNNNNNNNGG	6 cut(s)	134, 1010, 1090, 1256, 1557, 1558
AflII	CTTAAG	1 cut(s)	793
AgsI	TTSAA	5 cut(s)	145, 886, 943, 1469, 1583
AjnI	CCWGG	2 cut(s)	1042, 1375
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	1 cut(s)	1178
AloI	GAACNNNNNNTCC	2 cut(s)	1251, 1283
Alw21I	GWGCWC	2 cut(s)	679, 873
Alw26I	GTCTC	2 cut(s)	823, 1133
AlwI	GGATC	5 cut(s)	345, 773, 995, 1406, 1469
AlwNI	CAGNNNCTG	1 cut(s)	1401
Aor13HI	TCCGGA	2 cut(s)	597, 1459
AoxI	GGCC	2 cut(s)	1081, 1117
ApeKI	GCWGC	5 cut(s)	1037, 1321, 1355, 1439, 1568
ApoI	RAATTY	5 cut(s)	172, 1463, 1502, 1587, 1614
Asp700I	GAANNNNTTC	2 cut(s)	456, 1591
AspLEI	GCGC	3 cut(s)	7, 665, 667
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	6 cut(s)	181, 220, 290, 724, 1025, 1165
AsuII	TTCGAA	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	1083
BanII	GRGCYC	1 cut(s)	873
BbrPI	CACGTG	1 cut(s)	674
Bbv12I	GWGCWC	2 cut(s)	679, 873
BbvI	GCAGC	5 cut(s)	1024, 1333, 1367, 1426, 1555
BccI	CCATC	8 cut(s)	223, 283, 422, 442, 703, 714, 1157, 1550
BceAI	ACGGC	1 cut(s)	1158
BciT130I	CCWGG	2 cut(s)	1044, 1377
BclI	TGATCA	2 cut(s)	400, 1170
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	2 cut(s)	823, 1133
BfaI	CTAG	5 cut(s)	129, 444, 783, 983, 1601
BfmI	CTRYAG	1 cut(s)	1407
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	793
BfuAI	ACCTGC	2 cut(s)	968, 1409
BisI	GCNGC	6 cut(s)	373, 1038, 1322, 1356, 1440, 1569
BlsI	GCNGC	6 cut(s)	374, 1039, 1323, 1357, 1441, 1570
Bme1390I	CCNGG	3 cut(s)	1011, 1044, 1377
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	3 cut(s)	1011, 1044, 1377
BmrI	ACTGGG	1 cut(s)	1271
BmsI	GCATC	5 cut(s)	739, 1076, 1234, 1342, 1465
BmuI	ACTGGG	1 cut(s)	1271
BpmI	CTGGAG	1 cut(s)	1065
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	2 cut(s)	74, 805
BpuMI	CCSGG	1 cut(s)	1011
BsaAI	YACGTR	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	1084
BsaWI	WCCGGW	2 cut(s)	597, 1459
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	6 cut(s)	134, 1010, 1090, 1256, 1557, 1558
Bse118I	RCCGGY	1 cut(s)	1119
Bse1I	ACTGG	2 cut(s)	357, 1266
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	2 cut(s)	597, 1459
BseBI	CCWGG	2 cut(s)	1044, 1377
BseDI	CCNNGG	1 cut(s)	1084
BseGI	GGATG	9 cut(s)	113, 453, 697, 714, 973, 1067, 1249, 1345, 1456
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	6 cut(s)	134, 1010, 1090, 1256, 1557, 1558
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	1465
BseNI	ACTGG	2 cut(s)	357, 1266
BsePI	GCGCGC	1 cut(s)	663
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	5 cut(s)	1024, 1333, 1367, 1426, 1555
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	2 cut(s)	663, 665
BshFI	GGCC	2 cut(s)	1083, 1119
BsiHKAI	GWGCWC	2 cut(s)	679, 873
BsiSI	CCGG	4 cut(s)	598, 1010, 1120, 1460
BslI	CCNNNNNNNGG	6 cut(s)	134, 1010, 1090, 1256, 1557, 1558
BsmAI	GTCTC	2 cut(s)	823, 1133
BsmBI	CGTCTC	1 cut(s)	1133
BsmI	GAATGC	3 cut(s)	1183, 1546, 1562
BsnI	GGCC	2 cut(s)	1083, 1119
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	679, 873
Bsp13I	TCCGGA	2 cut(s)	597, 1459
Bsp143I	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
BspACI	CCGC	7 cut(s)	22, 38, 206, 372, 661, 807, 932
BspANI	GGCC	2 cut(s)	1083, 1119
BspCNI	CTCAG	1 cut(s)	1464
BspEI	TCCGGA	2 cut(s)	597, 1459
BspFNI	CGCG	2 cut(s)	663, 665
BspLI	GGNNCC	1 cut(s)	453
BspMI	ACCTGC	2 cut(s)	968, 1409
BspPI	GGATC	5 cut(s)	345, 773, 995, 1406, 1469
BspT104I	TTCGAA	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	1119
BsrI	ACTGG	2 cut(s)	357, 1266
BssAI	RCCGGY	1 cut(s)	1119
BssECI	CCNNGG	1 cut(s)	1084
BssHII	GCGCGC	1 cut(s)	663
BssMI	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
BssNAI	GTATAC	1 cut(s)	1393
BssT1I	CCWWGG	1 cut(s)	1084
Bst1107I	GTATAC	1 cut(s)	1393
Bst2UI	CCWGG	2 cut(s)	1044, 1377
Bst4CI	ACNGT	3 cut(s)	420, 776, 1397
Bst6I	CTCTTC	6 cut(s)	383, 636, 880, 1271, 1413, 1422
BstAFI	CTTAAG	1 cut(s)	793
BstAPI	GCANNNNNTGC	2 cut(s)	554, 1568
BstBAI	YACGTR	1 cut(s)	674
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	5 cut(s)	26, 546, 574, 665, 669
BstDEI	CTNAG	4 cut(s)	347, 560, 1146, 1451
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	9 cut(s)	113, 453, 697, 714, 973, 1067, 1249, 1345, 1456
BstFNI	CGCG	2 cut(s)	663, 665
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 665, 667
BstKTI	GATC	9 cut(s)	250, 340, 346, 403, 781, 1003, 1173, 1414, 1477
BstMAI	GTCTC	2 cut(s)	823, 1133
BstMBI	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 508, 554, 660, 877, 1342, 1568
BstNI	CCWGG	2 cut(s)	1044, 1377
BstSCI	CCNGG	3 cut(s)	1009, 1042, 1375
BstSFI	CTRYAG	1 cut(s)	1407
BstUI	CGCG	2 cut(s)	663, 665
BstV1I	GCAGC	5 cut(s)	1024, 1333, 1367, 1426, 1555
BstX2I	RGATCY	3 cut(s)	1000, 1411, 1474
BstXI	CCANNNNNNTGG	1 cut(s)	1163
BstYI	RGATCY	3 cut(s)	1000, 1411, 1474
BstZ17I	GTATAC	1 cut(s)	1393
BsuRI	GGCC	2 cut(s)	1083, 1119
BtgZI	GCGATG	2 cut(s)	669, 733
BtsCI	GGATG	9 cut(s)	113, 453, 697, 714, 973, 1067, 1249, 1345, 1456
BtsIMutI	CAGTG	3 cut(s)	357, 416, 781
BveI	ACCTGC	2 cut(s)	968, 1409
Cac8I	GCNNGC	5 cut(s)	26, 546, 574, 665, 669
CaiI	CAGNNNCTG	1 cut(s)	1401
CfoI	GCGC	3 cut(s)	7, 665, 667
Cfr10I	RCCGGY	1 cut(s)	1119
CseI	GACGC	1 cut(s)	1063
Csp6I	GTAC	5 cut(s)	11, 321, 1197, 1218, 1398
CspCI	CAANNNNNGTGG	2 cut(s)	1360, 1395
CviAII	CATG	5 cut(s)	566, 616, 866, 1063, 1251
CviQI	GTAC	5 cut(s)	11, 321, 1197, 1218, 1398
DdeI	CTNAG	4 cut(s)	347, 560, 1146, 1451
DpnI	GATC	9 cut(s)	249, 339, 345, 402, 780, 1002, 1172, 1413, 1476
DpnII	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
EaeI	YGGCCR	1 cut(s)	1081
Eam1104I	CTCTTC	6 cut(s)	383, 636, 880, 1271, 1413, 1422
EarI	CTCTTC	6 cut(s)	383, 636, 880, 1271, 1413, 1422
EciI	GGCGGA	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	1084
Eco24I	GRGCYC	1 cut(s)	873
Eco32I	GATATC	2 cut(s)	395, 1192
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	1437
Eco72I	CACGTG	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	871
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	1614
EcoRII	CCWGG	2 cut(s)	1042, 1375
EcoRV	GATATC	2 cut(s)	395, 1192
EcoT14I	CCWWGG	1 cut(s)	1084
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	1084
Esp3I	CGTCTC	1 cut(s)	1133
FaeI	CATG	5 cut(s)	569, 619, 869, 1066, 1254
FalI	AAGNNNNNCTT	4 cut(s)	543, 575, 1576, 1608
FatI	CATG	5 cut(s)	565, 615, 865, 1062, 1250
FauI	CCCGC	2 cut(s)	800, 925
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	2 cut(s)	400, 1170
FblI	GTMKAC	1 cut(s)	1392
Fnu4HI	GCNGC	6 cut(s)	373, 1038, 1322, 1356, 1440, 1569
FokI	GGATG	9 cut(s)	100, 460, 684, 721, 980, 1054, 1256, 1352, 1443
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	6 cut(s)	373, 1038, 1322, 1356, 1440, 1569
FspBI	CTAG	5 cut(s)	129, 444, 783, 983, 1601
GlaI	GCGC	3 cut(s)	6, 664, 666
GluI	GCNGC	6 cut(s)	373, 1038, 1322, 1356, 1440, 1569
GsuI	CTGGAG	1 cut(s)	1065
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	1083, 1119
HapII	CCGG	4 cut(s)	598, 1010, 1120, 1460
HgaI	GACGC	1 cut(s)	1063
HhaI	GCGC	3 cut(s)	7, 665, 667
Hin1II	CATG	5 cut(s)	569, 619, 869, 1066, 1254
Hin6I	GCGC	3 cut(s)	5, 663, 665
HinP1I	GCGC	3 cut(s)	5, 663, 665
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HindIII	AAGCTT	2 cut(s)	602, 842
HinfI	GANTC	4 cut(s)	469, 592, 626, 1128
HpaII	CCGG	4 cut(s)	598, 1010, 1120, 1460
HphI	GGTGA	6 cut(s)	181, 220, 290, 724, 1025, 1165
Hpy166II	GTNNAC	4 cut(s)	323, 416, 1105, 1393
Hpy188I	TCNGA	4 cut(s)	1189, 1207, 1597, 1640
Hpy8I	GTNNAC	4 cut(s)	323, 416, 1105, 1393
HpyAV	CCTTC	4 cut(s)	63, 160, 941, 1109
HpyCH4III	ACNGT	3 cut(s)	420, 776, 1397
HpyCH4IV	ACGT	2 cut(s)	673, 1491
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 508, 554, 660, 877, 1342, 1568
HpyF3I	CTNAG	4 cut(s)	347, 560, 1146, 1451
HpySE526I	ACGT	2 cut(s)	673, 1491
Hsp92II	CATG	5 cut(s)	569, 619, 869, 1066, 1254
HspAI	GCGC	3 cut(s)	5, 663, 665
Kpn2I	TCCGGA	2 cut(s)	597, 1459
Ksp22I	TGATCA	2 cut(s)	400, 1170
Kzo9I	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
LmnI	GCTCC	4 cut(s)	1045, 1252, 1318, 1597
Lsp1109I	GCAGC	5 cut(s)	1024, 1333, 1367, 1426, 1555
LweI	GCATC	5 cut(s)	739, 1076, 1234, 1342, 1465
MaeI	CTAG	5 cut(s)	129, 444, 783, 983, 1601
MaeII	ACGT	2 cut(s)	673, 1491
MaeIII	GTNAC	4 cut(s)	84, 355, 835, 1507
MalI	GATC	9 cut(s)	249, 339, 345, 402, 780, 1002, 1172, 1413, 1476
MboI	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
MflI	RGATCY	3 cut(s)	1000, 1411, 1474
MhlI	GDGCHC	2 cut(s)	679, 873
MlsI	TGGCCA	1 cut(s)	1083
MluCI	AATT	9 cut(s)	172, 477, 644, 750, 1304, 1463, 1502, 1587, 1614
MluNI	TGGCCA	1 cut(s)	1083
MmeI	TCCRAC	5 cut(s)	280, 365, 1221, 1274, 1557
Mox20I	TGGCCA	1 cut(s)	1083
MroI	TCCGGA	2 cut(s)	597, 1459
MroXI	GAANNNNTTC	2 cut(s)	456, 1591
MscI	TGGCCA	1 cut(s)	1083
MseI	TTAA	5 cut(s)	498, 585, 794, 846, 854
MslI	CAYNNNNRTG	2 cut(s)	885, 1178
Msp20I	TGGCCA	1 cut(s)	1083
MspA1I	CMGCKG	2 cut(s)	807, 1324
MspCI	CTTAAG	1 cut(s)	793
MspI	CCGG	4 cut(s)	598, 1010, 1120, 1460
MspR9I	CCNGG	3 cut(s)	1011, 1044, 1377
Mva1269I	GAATGC	3 cut(s)	1183, 1546, 1562
MvaI	CCWGG	2 cut(s)	1044, 1377
MvnI	CGCG	2 cut(s)	663, 665
MwoI	GCNNNNNNNGC	7 cut(s)	203, 508, 554, 660, 877, 1342, 1568
NciI	CCSGG	1 cut(s)	1011
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
NlaIII	CATG	5 cut(s)	569, 619, 869, 1066, 1254
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	3 cut(s)	84, 355, 835
NspV	TTCGAA	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	1178
PauI	GCGCGC	1 cut(s)	663
PctI	GAATGC	3 cut(s)	1183, 1546, 1562
PdmI	GAANNNNTTC	2 cut(s)	456, 1591
PfeI	GAWTC	4 cut(s)	469, 592, 626, 1128
PflMI	CCANNNNNTGG	2 cut(s)	1090, 1256
PfoI	TCCNGGA	1 cut(s)	1042
PkrI	GCNGC	6 cut(s)	374, 1039, 1323, 1357, 1441, 1570
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	674
Psp124BI	GAGCTC	1 cut(s)	873
Psp6I	CCWGG	2 cut(s)	1042, 1375
PspCI	CACGTG	1 cut(s)	674
PspGI	CCWGG	2 cut(s)	1042, 1375
PspN4I	GGNNCC	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	1401
PsuI	RGATCY	3 cut(s)	1000, 1411, 1474
PteI	GCGCGC	1 cut(s)	663
PvuII	CAGCTG	1 cut(s)	1324
RsaI	GTAC	5 cut(s)	12, 322, 1198, 1219, 1399
RsaNI	GTAC	5 cut(s)	11, 321, 1197, 1218, 1398
RseI	CAYNNNNRTG	2 cut(s)	885, 1178
SacI	GAGCTC	1 cut(s)	873
SaqAI	TTAA	5 cut(s)	498, 585, 794, 846, 854
SatI	GCNGC	6 cut(s)	373, 1038, 1322, 1356, 1440, 1569
Sau3AI	GATC	9 cut(s)	247, 337, 343, 400, 778, 1000, 1170, 1411, 1474
ScrFI	CCNGG	3 cut(s)	1011, 1044, 1377
SduI	GDGCHC	2 cut(s)	679, 873
SfaNI	GCATC	5 cut(s)	739, 1076, 1234, 1342, 1465
SfcI	CTRYAG	1 cut(s)	1407
SfuI	TTCGAA	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	885, 1178
SmlI	CTYRAG	3 cut(s)	89, 793, 820
SmoI	CTYRAG	3 cut(s)	89, 793, 820
Sse9I	AATT	9 cut(s)	172, 477, 644, 750, 1304, 1463, 1502, 1587, 1614
SsiI	CCGC	7 cut(s)	22, 38, 206, 372, 661, 807, 932
SspMI	CTAG	5 cut(s)	129, 444, 783, 983, 1601
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	3 cut(s)	1009, 1042, 1375
StyI	CCWWGG	1 cut(s)	1084
TaaI	ACNGT	3 cut(s)	420, 776, 1397
TaiI	ACGT	2 cut(s)	676, 1494
TaqI	TCGA	5 cut(s)	475, 1274, 1350, 1554, 1623
TasI	AATT	9 cut(s)	172, 477, 644, 750, 1304, 1463, 1502, 1587, 1614
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	4 cut(s)	469, 592, 626, 1128
Tru1I	TTAA	5 cut(s)	498, 585, 794, 846, 854
Tru9I	TTAA	5 cut(s)	498, 585, 794, 846, 854
TscAI	CASTG	3 cut(s)	364, 423, 781
TseFI	GTSAC	3 cut(s)	84, 355, 835
TseI	GCWGC	5 cut(s)	1037, 1321, 1355, 1439, 1568
Tsp45I	GTSAC	3 cut(s)	84, 355, 835
TspDTI	ATGAA	5 cut(s)	917, 984, 1128, 1440, 1566
TspGWI	ACGGA	4 cut(s)	106, 371, 887, 1184
TspRI	CASTG	3 cut(s)	364, 423, 781
Van91I	CCANNNNNTGG	2 cut(s)	1090, 1256
Vha464I	CTTAAG	1 cut(s)	793
XagI	CCTNNNNNAGG	1 cut(s)	132
XapI	RAATTY	5 cut(s)	172, 1463, 1502, 1587, 1614
XmiI	GTMKAC	1 cut(s)	1392
XmnI	GAANNNNTTC	2 cut(s)	456, 1591
XspI	CTAG	5 cut(s)	129, 444, 783, 983, 1601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.