Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010493

Physical Location & Seq

Genomic Coordinates Forward (+)

62353971 .. 62354842

Gene Structure 872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAAGAGACAGAGAAGATGAGCAGACCCTGGATTTGGTTAGTTGCTTGATGCTGTTATCCAAAGTCGGCCAAAATGATTCATCATCCCCAGTCAAAAAACAAAAGACCTCGGACCGTGCCTTTGTCTGCAAGACGTGTAATCGCGAGTTCTCATCGTTCCAAGCCCTCGGAGGCCACAGAGCCAGCCACAACAAGCCGAAACTAATGGCAGGCGGAGCTATAGACCTTTTACAGCTTCCTCAGTCGACGCCTAGCTCGCCGGCCAAGCCCAAGACGCACGAGTGCCCCATCTGCGGGCTTGAATTCGCAATTGGGCAAGCGCTTGGAGGACACATGAGGAGACATAGGGATGTTATGAATTCTGCTTCTGCAGATCGAGATCGGGCAGCAGCCGTGCCGGTGTTGAAGAAATCCAATAGTAGCAAAAGGGTGTCGTGCTTGAATCTGGATTTGAATTTGGCACCACCGGGATACCAACGTCATTACGATTTGACGAAGCTGCAGTTGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

172

Amino Acids

18.85

Weight (kDa)

9.56

Isoelectric Point (pI)

63.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 66	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	94 - 118	1.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13180
fragaria_vesca	FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g43190
malus_domestica	MD03G1027000.v1.1
prunus_persica	Prupe.6G024300_v2.0.a1 Prupe.6G024300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077011
rosa_multiflora	Rmu_sc0003323.1_g000006 Rmu_sc0038050.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005130
rosa_rugosa	Rorug05G0450200 Rorug05G0450300.1
rosa_samantha	Rh5AG504900 Rh5BG526600 Rh5CG550400 Rh5DG538800
rosa_wichuraiana	Rw5G047150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	248
AccII	CGCG	1 cut(s)	147
AciI	CCGC	2 cut(s)	216, 297
AcoI	YGGCCR	2 cut(s)	70, 264
AcsI	RAATTY	3 cut(s)	305, 361, 457
AcyI	GRCGYC	1 cut(s)	251
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	305, 409, 445, 457
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	221, 238, 258, 502
AluI	AGCT	4 cut(s)	221, 238, 258, 502
Alw26I	GTCTC	2 cut(s)	3, 337
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	324
AoxI	GGCC	3 cut(s)	70, 175, 264
ApeKI	GCWGC	3 cut(s)	389, 392, 502
ApoI	RAATTY	3 cut(s)	305, 361, 457
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 107, 139
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	290
BaeI	ACNNNNGTAYC	2 cut(s)	466, 499
BanI	GGYRCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	401, 404, 489
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	3, 337
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	3 cut(s)	222, 372, 503
BfoI	RGCGCY	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	3 cut(s)	390, 393, 503
BlsI	GCNGC	3 cut(s)	391, 394, 504
Bme1390I	CCNGG	2 cut(s)	32, 471
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	32, 471
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	30, 111, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 296, 297
Bse118I	RCCGGY	2 cut(s)	262, 400
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 111, 169
BseGI	GGATG	2 cut(s)	86, 358
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	355
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	3 cut(s)	401, 404, 489
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	72, 177, 266
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	263, 401, 470
BslI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BsmAI	GTCTC	2 cut(s)	3, 337
BsnI	GGCC	3 cut(s)	72, 177, 266
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	376, 382
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	2 cut(s)	216, 297
BspANI	GGCC	3 cut(s)	72, 177, 266
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	2 cut(s)	376, 507
BspT107I	GGYRCC	1 cut(s)	463
BsrFI	RCCGGY	2 cut(s)	262, 400
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	2 cut(s)	262, 400
BssECI	CCNNGG	3 cut(s)	30, 111, 169
BssMI	GATC	2 cut(s)	376, 382
BssNI	GRCGYC	1 cut(s)	251
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	6 cut(s)	187, 214, 260, 264, 299, 321
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	86, 358
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	379, 385
BstMAI	GTCTC	2 cut(s)	3, 337
BstMBI	GATC	2 cut(s)	376, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 259, 268, 277, 294
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 469
BstSFI	CTRYAG	3 cut(s)	222, 372, 503
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	401, 404, 489
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	72, 177, 266
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	86, 358
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	6 cut(s)	187, 214, 260, 264, 299, 321
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	2 cut(s)	262, 400
Cfr13I	GGNCC	1 cut(s)	115
CpoI	CGGWCCG	1 cut(s)	115
CseI	GACGC	2 cut(s)	259, 286
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	378, 384
DpnII	GATC	2 cut(s)	376, 382
EaeI	YGGCCR	2 cut(s)	70, 264
EciI	GGCGGA	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	324
EcoRI	GAATTC	2 cut(s)	305, 361
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	340
FaiI	YATR	4 cut(s)	224, 338, 348, 359
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	290
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	390, 393, 503
FokI	GGATG	2 cut(s)	73, 365
Fsp4HI	GCNGC	3 cut(s)	390, 393, 503
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	3 cut(s)	390, 393, 503
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	72, 177, 266
HapII	CCGG	3 cut(s)	263, 401, 470
HgaI	GACGC	2 cut(s)	259, 286
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	2 cut(s)	80, 445
HpaII	CCGG	3 cut(s)	263, 401, 470
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	115, 173
Hpy188III	TCNNGA	3 cut(s)	146, 380, 449
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	137, 481
HpyCH4V	TGCA	3 cut(s)	132, 374, 505
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 259, 268, 277, 294
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	137, 481
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	376, 382
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	17, 44, 105, 198, 199, 276, 414, 434, 483
Lsp1109I	GCAGC	3 cut(s)	401, 404, 489
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	137, 481
MalI	GATC	2 cut(s)	378, 384
MboI	GATC	2 cut(s)	376, 382
MboII	GAAGA	2 cut(s)	29, 421
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	4 cut(s)	305, 312, 361, 457
MnlI	CCTC	6 cut(s)	121, 167, 179, 252, 323, 333
MroNI	GCCGGC	1 cut(s)	262
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	3 cut(s)	263, 401, 470
MspR9I	CCNGG	2 cut(s)	32, 471
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	218, 259, 268, 277, 294
NaeI	GCCGGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	2 cut(s)	376, 382
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	465
NruI	TCGCGA	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	80, 445
PkrI	GCNGC	3 cut(s)	391, 394, 504
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	2 cut(s)	376, 507
PstNI	CAGNNNCTG	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	351
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SalI	GTCGAC	1 cut(s)	247
SatI	GCNGC	3 cut(s)	390, 393, 503
Sau3AI	GATC	2 cut(s)	376, 382
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	32, 471
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	113, 140, 223, 231, 240, 260, 484, 504
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	3 cut(s)	222, 372, 503
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	305, 312, 361, 457
SsiI	CCGC	2 cut(s)	216, 297
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	30, 469
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	2 cut(s)	140, 484
TaqI	TCGA	2 cut(s)	248, 379
TasI	AATT	4 cut(s)	305, 312, 361, 457
TfiI	GAWTC	2 cut(s)	80, 445
TseI	GCWGC	3 cut(s)	389, 392, 502
TspDTI	ATGAA	3 cut(s)	17, 72, 374
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	3 cut(s)	305, 361, 457
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.