Rmu_sc0003323.1_g000006
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003323.1
Physical Location & Seq
Forward (+)
52736 .. 56999
4264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003323.1_g000006.1.cds

Sequence Viewer

Length: 1422 bp
atgtcacaggtcctgtctttccatgttcttctatctgcagagacctacaggccttcttcttcttcctcctccaagtcactcaagtcggagcagagaacaaagacatccatttctactcccagaaaaggtaatttcaatccctcacgcaaaacccagaagctgaataccgaggtttctacctacggaggtggtcagttcaatccggcacgcaaaacccagaagctgaatttggagatttctcctcacagagctgtttctgcggtgagattgatgagaatagagatgggaggtgcttttgctgatcttctcaatgagaaagggaagggctctggtgaaaatgagatgggatatgttgaaagaactctcgggtttcgcacacgggatctagaggatcgtgatcttagactggtcactgaaattgttggaggcaccatacgttggaagcgatatcttgatcatttgatcagttcgatatgtcgtgatgcaaacacatttagcaggatggaaccacttcttttacagattctccgaattggtttctatgagattgtcaagcttaatatgccaccgtatgctgttgtggatgagaatgtgaggcttgcgaagattgcccttagacatggtgctggcaacatggtcaatgggattctccggaagcttgttctacttaaggaaagtaactctcttcctctacccaaagtagagggtgatgatcgcacacaagcacgtgctcttgccactctgtactctcatcctgtatggatgataaggcgatggacaaagcatctgggacaagaagaagcaattagattgatggcatggaataatagtgatcctagtttcagcttaagggcaaacagtgggaaaggtatttcaagagctgaccttgtgacaaagcttaatttattggaggtcccacatgagctctctttgcatttgaatgattttgtccgtatgaaaaaagggttgcagactgtaattcaagctggtttgctaaaagaaggtttatgttctgtacaggacgagagtgcaggtctggtagtttctgttgtagatccgcaacagggtgaaagcattattgattgttgtgctgctcctggaggaaagactctttacatagcgtcccttttgagtggccaaggtatggtatatgcaattgacataaatgaagggcggttgagaatcctcaaagaaacggctaagttgcaccaagtagatagtgtcgtcaccactatccatgctgatatgcgtagttatgctgacaataatactatgaagtgtgataaagttctgttggatgctccatgttctggactgggtgttctctccaagagggcagacttgcgttggaacaggagattagaggatatggaggagcttaagaatttgcaggatgagctccttgatgcagcttctcagtaa

Protein Analysis

473

Amino Acids

52.72

Weight (kDa)

9.26

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1022
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 3 cut(s) 438, 1144, 1310
AccIII TCCGGA 1 cut(s) 651
AciI CCGC 3 cut(s) 260, 1058, 1174
AclWI GGATC 4 cut(s) 390, 399, 827, 1049
AcoI YGGCCR 1 cut(s) 1135
AcsI RAATTY 2 cut(s) 226, 1384
AcvI CACGTG 1 cut(s) 728
AfaI GTAC 2 cut(s) 746, 1017
AfiI CCNNNNNNNGG 5 cut(s) 125, 438, 1064, 1144, 1310
AflII CTTAAG 3 cut(s) 668, 847, 1379
AgsI TTSAA 6 cut(s) 136, 199, 356, 876, 940, 983
AjnI CCWGG 1 cut(s) 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AloI GAACNNNNNNTCC 2 cut(s) 1305, 1337
Alw21I GWGCWC 3 cut(s) 733, 927, 1401
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 4 cut(s) 390, 399, 827, 1049
AlwNI CAGNNNCTG 3 cut(s) 13, 160, 223
Ama87I CYCGRG 1 cut(s) 365
Aor13HI TCCGGA 1 cut(s) 651
AoxI GGCC 2 cut(s) 50, 1135
ApeKI GCWGC 2 cut(s) 1091, 1409
ApoI RAATTY 2 cut(s) 226, 1384
Asp700I GAANNNNTTC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 10, 913
AsuHPI GGTGA 5 cut(s) 274, 344, 719, 1079, 1219
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 2 cut(s) 10, 913
BalI TGGCCA 1 cut(s) 1137
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 3 cut(s) 329, 927, 1401
BbrPI CACGTG 1 cut(s) 728
Bbv12I GWGCWC 3 cut(s) 733, 927, 1401
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 5 cut(s) 277, 337, 496, 768, 808
BceAI ACGGC 1 cut(s) 1212
BciT130I CCWGG 1 cut(s) 1098
BclI TGATCA 2 cut(s) 454, 462
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 386, 837
BfmI CTRYAG 2 cut(s) 36, 46
BfrI CTTAAG 3 cut(s) 668, 847, 1379
BfuAI ACCTGC 1 cut(s) 1022
BisI GCNGC 2 cut(s) 1092, 1410
BlsI GCNGC 2 cut(s) 1093, 1411
Bme1390I CCNGG 1 cut(s) 1098
Bme18I GGWCC 2 cut(s) 10, 913
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 10, 913
BmiI GGNNCC 3 cut(s) 430, 507, 915
BmrFI CCNGG 1 cut(s) 1098
BmrI ACTGGG 1 cut(s) 1325
BmsI GCATC 4 cut(s) 472, 793, 1288, 1396
BmuI ACTGGG 1 cut(s) 1325
BpmI CTGGAG 1 cut(s) 1119
BpuEI CTTGAG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 168, 1138
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 438, 1064, 1144, 1310
Bse1I ACTGG 2 cut(s) 411, 1320
Bse8I GATNNNNATC 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 651
BseBI CCWGG 1 cut(s) 1098
BseDI CCNNGG 2 cut(s) 168, 1138
BseGI GGATG 7 cut(s) 104, 507, 589, 751, 768, 1303, 1399
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 5 cut(s) 125, 438, 1064, 1144, 1310
BseNI ACTGG 2 cut(s) 411, 1320
BseRI GAGGAG 3 cut(s) 58, 231, 1388
BseXI GCAGC 1 cut(s) 1078
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 2 cut(s) 52, 1137
BshNI GGYRCC 1 cut(s) 428
BsiHKAI GWGCWC 3 cut(s) 733, 927, 1401
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 2 cut(s) 203, 652
BslFI GGGAC 3 cut(s) 804, 899, 1108
BslI CCNNNNNNNGG 5 cut(s) 125, 438, 1064, 1144, 1310
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 3 cut(s) 804, 899, 1108
BsnI GGCC 2 cut(s) 52, 1137
Bso31I GGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 329, 733, 927, 1401
Bsp13I TCCGGA 1 cut(s) 651
Bsp1407I TGTACA 1 cut(s) 1015
Bsp143I GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
BspACI CCGC 3 cut(s) 260, 1058, 1174
BspANI GGCC 2 cut(s) 52, 1137
BspEI TCCGGA 1 cut(s) 651
BspLI GGNNCC 3 cut(s) 430, 507, 915
BspMAI CTGCAG 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 1022
BspPI GGATC 4 cut(s) 390, 399, 827, 1049
BspT107I GGYRCC 1 cut(s) 428
BspTI CTTAAG 3 cut(s) 668, 847, 1379
BspTNI GGTCTC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 1015
BsrI ACTGG 2 cut(s) 411, 1320
BssECI CCNNGG 2 cut(s) 168, 1138
BssMI GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
BssT1I CCWWGG 1 cut(s) 1138
Bst2UI CCWGG 1 cut(s) 1098
Bst4CI ACNGT 3 cut(s) 570, 860, 976
Bst6I CTCTTC 1 cut(s) 690
BstAFI CTTAAG 3 cut(s) 668, 847, 1379
BstAUI TGTACA 1 cut(s) 1015
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 3 cut(s) 208, 600, 628
BstDEI CTNAG 4 cut(s) 401, 614, 1200, 1416
BstF5I GGATG 7 cut(s) 104, 507, 589, 751, 768, 1303, 1399
BstKTI GATC 9 cut(s) 304, 385, 394, 400, 457, 465, 715, 835, 1057
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
BstMWI GCNNNNNNNGC 5 cut(s) 257, 562, 608, 931, 1396
BstNI CCWGG 1 cut(s) 1098
BstSCI CCNGG 1 cut(s) 1096
BstSFI CTRYAG 2 cut(s) 36, 46
BstV1I GCAGC 1 cut(s) 1078
BstX2I RGATCY 2 cut(s) 382, 1054
BstYI RGATCY 2 cut(s) 382, 1054
BsuRI GGCC 2 cut(s) 52, 1137
BtgZI GCGATG 1 cut(s) 787
BtsCI GGATG 7 cut(s) 104, 507, 589, 751, 768, 1303, 1399
BtsIMutI CAGTG 2 cut(s) 411, 865
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 3 cut(s) 208, 600, 628
CaiI CAGNNNCTG 3 cut(s) 13, 160, 223
Cfr13I GGNCC 2 cut(s) 10, 913
CseI GACGC 1 cut(s) 1110
Csp6I GTAC 2 cut(s) 745, 1016
CviAII CATG 7 cut(s) 23, 620, 634, 819, 920, 1238, 1305
CviQI GTAC 2 cut(s) 745, 1016
DdeI CTNAG 4 cut(s) 401, 614, 1200, 1416
DpnI GATC 9 cut(s) 303, 384, 393, 399, 456, 464, 714, 834, 1056
DpnII GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
EaeI YGGCCR 1 cut(s) 1135
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Ecl136II GAGCTC 2 cut(s) 925, 1399
Eco130I CCWWGG 1 cut(s) 1138
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 3 cut(s) 329, 927, 1401
Eco31I GGTCTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 10, 913
Eco53kI GAGCTC 2 cut(s) 925, 1399
Eco72I CACGTG 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 2 cut(s) 925, 1399
EcoO109I RGGNCCY 2 cut(s) 10, 913
EcoRII CCWGG 1 cut(s) 1096
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 1138
EcoT38I GRGCYC 3 cut(s) 329, 927, 1401
ErhI CCWWGG 1 cut(s) 1138
FaeI CATG 7 cut(s) 26, 623, 637, 822, 923, 1241, 1308
FaqI GGGAC 3 cut(s) 804, 899, 1108
FatI CATG 7 cut(s) 22, 619, 633, 818, 919, 1237, 1304
FbaI TGATCA 2 cut(s) 454, 462
Fnu4HI GCNGC 2 cut(s) 1092, 1410
FokI GGATG 7 cut(s) 91, 514, 596, 738, 775, 1310, 1406
FriOI GRGCYC 3 cut(s) 329, 927, 1401
Fsp4HI GCNGC 2 cut(s) 1092, 1410
FspBI CTAG 2 cut(s) 386, 837
GluI GCNGC 2 cut(s) 1092, 1410
GsuI CTGGAG 1 cut(s) 1119
HaeIII GGCC 2 cut(s) 52, 1137
HapII CCGG 2 cut(s) 203, 652
HgaI GACGC 1 cut(s) 1110
Hin1II CATG 7 cut(s) 26, 623, 637, 822, 923, 1241, 1308
HindIII AAGCTT 3 cut(s) 554, 656, 896
HinfI GANTC 4 cut(s) 523, 646, 1108, 1182
HpaII CCGG 2 cut(s) 203, 652
HphI GGTGA 5 cut(s) 274, 344, 719, 1079, 1219
Hpy188I TCNGA 2 cut(s) 88, 530
Hpy188III TCNNGA 7 cut(s) 386, 395, 452, 479, 652, 876, 1311
HpyAV CCTTC 4 cut(s) 63, 316, 995, 1163
HpyCH4III ACNGT 3 cut(s) 570, 860, 976
HpyCH4IV ACGT 2 cut(s) 436, 727
HpyCH4V TGCA 9 cut(s) 38, 485, 934, 970, 1031, 1154, 1207, 1390, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 562, 608, 931, 1396
HpyF3I CTNAG 4 cut(s) 401, 614, 1200, 1416
HpySE526I ACGT 2 cut(s) 436, 727
Hsp92II CATG 7 cut(s) 26, 623, 637, 822, 923, 1241, 1308
Kpn2I TCCGGA 1 cut(s) 651
Ksp22I TGATCA 2 cut(s) 454, 462
Kzo9I GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
LmnI GCTCC 5 cut(s) 88, 1099, 1306, 1375, 1404
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 4 cut(s) 472, 793, 1288, 1396
MaeI CTAG 2 cut(s) 386, 837
MaeII ACGT 2 cut(s) 436, 727
MaeIII GTNAC 6 cut(s) 3, 75, 409, 677, 889, 1225
MalI GATC 9 cut(s) 303, 384, 393, 399, 456, 464, 714, 834, 1056
MboI GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
MboII GAAGA 8 cut(s) 20, 48, 51, 54, 296, 616, 677, 809
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 2 cut(s) 382, 1054
MhlI GDGCHC 4 cut(s) 329, 733, 927, 1401
MlsI TGGCCA 1 cut(s) 1137
MluCI AATT 9 cut(s) 130, 226, 417, 531, 804, 901, 978, 1155, 1384
MluNI TGGCCA 1 cut(s) 1137
MlyI GAGTC 1 cut(s) 1102
MmeI TCCRAC 5 cut(s) 66, 403, 419, 1275, 1328
Mox20I TGGCCA 1 cut(s) 1137
MroI TCCGGA 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 1137
MseI TTAA 5 cut(s) 558, 669, 848, 900, 1380
MslI CAYNNNNRTG 1 cut(s) 939
Msp20I TGGCCA 1 cut(s) 1137
MspCI CTTAAG 3 cut(s) 668, 847, 1379
MspI CCGG 2 cut(s) 203, 652
MspR9I CCNGG 1 cut(s) 1098
MunI CAATTG 1 cut(s) 1155
MvaI CCWGG 1 cut(s) 1098
MwoI GCNNNNNNNGC 5 cut(s) 257, 562, 608, 931, 1396
NdeII GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
NlaIII CATG 7 cut(s) 26, 623, 637, 822, 923, 1241, 1308
NlaIV GGNNCC 3 cut(s) 430, 507, 915
NmuCI GTSAC 5 cut(s) 3, 75, 409, 889, 1225
PceI AGGCCT 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 3 cut(s) 523, 646, 1182
PflMI CCANNNNNTGG 3 cut(s) 438, 1144, 1310
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 2 cut(s) 1093, 1411
PleI GAGTC 1 cut(s) 1102
PmaCI CACGTG 1 cut(s) 728
PmlI CACGTG 1 cut(s) 728
PpsI GAGTC 1 cut(s) 1102
Ppu21I YACGTR 1 cut(s) 728
PpuMI RGGWCCY 2 cut(s) 10, 913
Psp124BI GAGCTC 2 cut(s) 927, 1401
Psp5II RGGWCCY 2 cut(s) 10, 913
Psp6I CCWGG 1 cut(s) 1096
PspCI CACGTG 1 cut(s) 728
PspGI CCWGG 1 cut(s) 1096
PspN4I GGNNCC 3 cut(s) 430, 507, 915
PspPI GGNCC 2 cut(s) 10, 913
PspPPI RGGWCCY 2 cut(s) 10, 913
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 3 cut(s) 13, 160, 223
PsuI RGATCY 2 cut(s) 382, 1054
RsaI GTAC 2 cut(s) 746, 1017
RsaNI GTAC 2 cut(s) 745, 1016
RseI CAYNNNNRTG 1 cut(s) 939
SacI GAGCTC 2 cut(s) 927, 1401
SaqAI TTAA 5 cut(s) 558, 669, 848, 900, 1380
SatI GCNGC 2 cut(s) 1092, 1410
Sau3AI GATC 9 cut(s) 301, 382, 391, 397, 454, 462, 712, 832, 1054
Sau96I GGNCC 2 cut(s) 10, 913
SchI GAGTC 1 cut(s) 1102
ScrFI CCNGG 1 cut(s) 1098
SduI GDGCHC 4 cut(s) 329, 733, 927, 1401
SfaNI GCATC 4 cut(s) 472, 793, 1288, 1396
SfcI CTRYAG 2 cut(s) 36, 46
SinI GGWCC 2 cut(s) 10, 913
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 4 cut(s) 80, 668, 847, 1379
SmoI CTYRAG 4 cut(s) 80, 668, 847, 1379
Sse9I AATT 9 cut(s) 130, 226, 417, 531, 804, 901, 978, 1155, 1384
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 3 cut(s) 260, 1058, 1174
SspMI CTAG 2 cut(s) 386, 837
SstI GAGCTC 2 cut(s) 927, 1401
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 1096
StyI CCWWGG 1 cut(s) 1138
TaaI ACNGT 3 cut(s) 570, 860, 976
TaiI ACGT 2 cut(s) 439, 730
TaqI TCGA 1 cut(s) 470
TasI AATT 9 cut(s) 130, 226, 417, 531, 804, 901, 978, 1155, 1384
TatI WGTACW 2 cut(s) 744, 1015
TfiI GAWTC 3 cut(s) 523, 646, 1182
Tru1I TTAA 5 cut(s) 558, 669, 848, 900, 1380
Tru9I TTAA 5 cut(s) 558, 669, 848, 900, 1380
TscAI CASTG 2 cut(s) 418, 865
TseFI GTSAC 5 cut(s) 3, 75, 409, 889, 1225
TseI GCWGC 2 cut(s) 1091, 1409
Tsp45I GTSAC 5 cut(s) 3, 75, 409, 889, 1225
TspDTI ATGAA 3 cut(s) 971, 1182, 1289
TspGWI ACGGA 2 cut(s) 198, 941
TspRI CASTG 2 cut(s) 418, 865
Van91I CCANNNNNTGG 3 cut(s) 438, 1144, 1310
Vha464I CTTAAG 3 cut(s) 668, 847, 1379
VpaK11BI GGWCC 2 cut(s) 10, 913
XapI RAATTY 2 cut(s) 226, 1384
XbaI TCTAGA 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 386, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.