FvH4_3g43190
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010493
Physical Location & Seq
Reverse (-)
36065595 .. 36069225
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43190.t1

Sequence Viewer

Length: 768 bp
ATGGTAAGGCGATGGACAAAGCATCTAGGACAAGAAGAAACAATTAAATTGATTACATGGAATAATAGTGATCCTAGTTTCAGCTTAAGGGCAAACAGTGGGAAAGGTTTTTCAAGAGCTGACCTTGTGACAAAGCTTAATTTATTGAAGGTCCCACATGAGATCTCTTTGCATTTGAATGATTTTGTCTGTATGAAAAAAGGGTTGCAGATTGTAATTCAGGCTGGTTTGCTAAAAGTAGGTTTATGTTCAGTACAGGATGAGAGTGCAGGTCTGGTAGTTTCTGTTGTAGATCCTCAACACTGTGAAAGCATTATAGATTGCTGTGCTGCTCCTGGAGGAAAGACTCTTTACATGGCATCTCTTTTGAGTGGCCAAGGTATGGTATATGCAATTGACATGAATGAAGGGCGATTGAGAATCCTCAAAGAAACGGCTAAGTTGCACCAAGTAGATGGTGTCATCACAACTATCCATGCTGATATGCGTAGTTATGCTGACAACAATACTATGAAGTTTCACAAAGTTCTGTTGGATGCTCCATGGTCTGGAGTCGGTGTTCTCACCAAGAGGGCAGACTTGCGTTGGAACAGGAGATTAGAGGACATGGAAGAGCTCAAGAATTTGCAGGATCAGCTCCTTGATGCAGCTACTCAATTGGTCAAGCCTGGTGGAGTATTAGTATACAGTTCTTGCTCCATATATCCGGAAGAGAATGAAGAGAGAACTGCTGCATTTCTTCTCAGGCATCCAGTTCAACAAGGATAA

Protein Analysis

256

Amino Acids

28.37

Weight (kDa)

7.08

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltr_RsmB-F PF01189 96 - 252 1.7e-45 16S rRNA methyltransferase RsmB/F
TRM5-TYW2_MTfase PF02475 102 - 184 8.7e-06 TRM5/TYW2 methyltransferase domain
FtsJ PF01728 103 - 230 4e-07 FtsJ-like methyltransferase
Methyltransf_15 PF09445 103 - 190 4.4e-07 RNA cap guanine-N2 methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AccB7I CCANNNNNTGG 2 cut(s) 382, 548
AccI GTMKAC 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 706
AclWI GGATC 3 cut(s) 65, 287, 639
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 382, 548
AflII CTTAAG 1 cut(s) 85
AgsI TTSAA 4 cut(s) 114, 148, 178, 758
AjnI CCWGG 2 cut(s) 334, 667
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 6 cut(s) 84, 119, 136, 616, 637, 650
AluI AGCT 6 cut(s) 84, 119, 136, 616, 637, 650
Alw21I GWGCWC 1 cut(s) 618
AlwI GGATC 3 cut(s) 65, 287, 639
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 3 cut(s) 329, 647, 731
ApoI RAATTY 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 556
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 375
BanII GRGCYC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 316, 659, 718
BccI CCATC 2 cut(s) 6, 449
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 2 cut(s) 336, 669
BfaI CTAG 2 cut(s) 26, 75
BfrI CTTAAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 260
BglII AGATCT 1 cut(s) 162
BisI GCNGC 3 cut(s) 330, 648, 732
BlsI GCNGC 3 cut(s) 331, 649, 733
Bme1390I CCNGG 2 cut(s) 336, 669
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 336, 669
BmsI GCATC 5 cut(s) 31, 368, 526, 634, 757
BpmI CTGGAG 2 cut(s) 357, 570
BpuEI CTTGAG 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 376, 542
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 4 cut(s) 543, 573, 666, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 548
Bse1I ACTGG 1 cut(s) 752
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 2 cut(s) 336, 669
BseDI CCNNGG 2 cut(s) 376, 542
BseGI GGATG 3 cut(s) 265, 541, 748
BseLI CCNNNNNNNGG 2 cut(s) 382, 548
BseMII CTCAG 1 cut(s) 757
BseNI ACTGG 1 cut(s) 752
BseXI GCAGC 3 cut(s) 316, 659, 718
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 618
BsiSI CCGG 1 cut(s) 707
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 382, 548
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 618
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 4 cut(s) 70, 162, 292, 631
Bsp19I CCATGG 1 cut(s) 542
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 756
BspEI TCCGGA 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 3 cut(s) 65, 287, 639
BspQI GCTCTTC 1 cut(s) 606
BspTI CTTAAG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 752
BssECI CCNNGG 2 cut(s) 376, 542
BssMI GATC 4 cut(s) 70, 162, 292, 631
BssNAI GTATAC 1 cut(s) 685
BssT1I CCWWGG 2 cut(s) 376, 542
Bst1107I GTATAC 1 cut(s) 685
Bst2UI CCWGG 2 cut(s) 336, 669
Bst4CI ACNGT 3 cut(s) 98, 305, 689
Bst6I CTCTTC 3 cut(s) 606, 705, 714
BstAFI CTTAAG 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 438, 743
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 265, 541, 748
BstKTI GATC 4 cut(s) 73, 165, 295, 634
BstMBI GATC 4 cut(s) 70, 162, 292, 631
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstNI CCWGG 2 cut(s) 336, 669
BstSCI CCNGG 2 cut(s) 334, 667
BstV1I GCAGC 3 cut(s) 316, 659, 718
BstX2I RGATCY 2 cut(s) 162, 292
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 2 cut(s) 162, 292
BstZ17I GTATAC 1 cut(s) 685
BsuRI GGCC 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 542
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 3 cut(s) 265, 541, 748
BtsIMutI CAGTG 2 cut(s) 103, 301
BveI ACCTGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 7 cut(s) 57, 158, 355, 400, 476, 543, 607
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 438, 743
DpnI GATC 4 cut(s) 72, 164, 294, 633
DpnII GATC 4 cut(s) 70, 162, 292, 631
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 606, 705, 714
EarI CTCTTC 3 cut(s) 606, 705, 714
Ecl136II GAGCTC 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 376, 542
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 334, 667
EcoT14I CCWWGG 2 cut(s) 376, 542
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 2 cut(s) 376, 542
FaeI CATG 7 cut(s) 60, 161, 358, 403, 479, 546, 610
FaqI GGGAC 1 cut(s) 137
FatI CATG 7 cut(s) 56, 157, 354, 399, 475, 542, 606
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 3 cut(s) 330, 648, 732
FokI GGATG 3 cut(s) 272, 548, 735
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 3 cut(s) 330, 648, 732
FspBI CTAG 2 cut(s) 26, 75
GluI GCNGC 3 cut(s) 330, 648, 732
GsuI CTGGAG 2 cut(s) 357, 570
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 707
Hin1II CATG 7 cut(s) 60, 161, 358, 403, 479, 546, 610
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 3 cut(s) 346, 420, 552
HpaII CCGG 1 cut(s) 707
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 1 cut(s) 685
Hpy188III TCNNGA 4 cut(s) 114, 549, 619, 707
Hpy8I GTNNAC 1 cut(s) 685
HpyAV CCTTC 2 cut(s) 142, 401
HpyCH4III ACNGT 3 cut(s) 98, 305, 689
HpyCH4V TGCA 8 cut(s) 172, 208, 269, 392, 445, 628, 647, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 2 cut(s) 438, 743
Hsp92II CATG 7 cut(s) 60, 161, 358, 403, 479, 546, 610
Kpn2I TCCGGA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 70, 162, 292, 631
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 4 cut(s) 337, 544, 642, 701
Lsp1109I GCAGC 3 cut(s) 316, 659, 718
LweI GCATC 5 cut(s) 31, 368, 526, 634, 757
MaeI CTAG 2 cut(s) 26, 75
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 72, 164, 294, 633
MboI GATC 4 cut(s) 70, 162, 292, 631
MboII GAAGA 5 cut(s) 47, 623, 722, 731, 731
MfeI CAATTG 2 cut(s) 393, 656
MflI RGATCY 2 cut(s) 162, 292
MhlI GDGCHC 1 cut(s) 618
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 7 cut(s) 42, 47, 139, 216, 393, 622, 656
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 2 cut(s) 340, 561
MmeI TCCRAC 2 cut(s) 513, 566
MnlI CCTC 5 cut(s) 306, 332, 434, 564, 595
Mox20I TGGCCA 1 cut(s) 375
MroI TCCGGA 1 cut(s) 706
MscI TGGCCA 1 cut(s) 375
MseI TTAA 3 cut(s) 45, 86, 138
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 85
MspI CCGG 1 cut(s) 707
MspR9I CCNGG 2 cut(s) 336, 669
MunI CAATTG 2 cut(s) 393, 656
MvaI CCWGG 2 cut(s) 336, 669
MwoI GCNNNNNNNGC 1 cut(s) 634
NcoI CCATGG 1 cut(s) 542
NdeII GATC 4 cut(s) 70, 162, 292, 631
NlaIII CATG 7 cut(s) 60, 161, 358, 403, 479, 546, 610
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 606
PfeI GAWTC 1 cut(s) 420
PflMI CCANNNNNTGG 2 cut(s) 382, 548
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 3 cut(s) 331, 649, 733
PleI GAGTC 2 cut(s) 340, 560
PpsI GAGTC 2 cut(s) 340, 560
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 618
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 334, 667
PspGI CCWGG 2 cut(s) 334, 667
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 2 cut(s) 162, 292
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 177
SacI GAGCTC 1 cut(s) 618
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 3 cut(s) 45, 86, 138
SatI GCNGC 3 cut(s) 330, 648, 732
Sau3AI GATC 4 cut(s) 70, 162, 292, 631
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 2 cut(s) 340, 561
ScrFI CCNGG 2 cut(s) 336, 669
SduI GDGCHC 1 cut(s) 618
SfaNI GCATC 5 cut(s) 31, 368, 526, 634, 757
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 85, 617
SmoI CTYRAG 2 cut(s) 85, 617
Sse9I AATT 7 cut(s) 42, 47, 139, 216, 393, 622, 656
SspMI CTAG 2 cut(s) 26, 75
SstI GAGCTC 1 cut(s) 618
StyD4I CCNGG 2 cut(s) 334, 667
StyI CCWWGG 2 cut(s) 376, 542
TaaI ACNGT 3 cut(s) 98, 305, 689
TasI AATT 7 cut(s) 42, 47, 139, 216, 393, 622, 656
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 3 cut(s) 45, 86, 138
Tru9I TTAA 3 cut(s) 45, 86, 138
TscAI CASTG 2 cut(s) 103, 308
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 329, 647, 731
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 5 cut(s) 209, 416, 420, 527, 732
TspRI CASTG 2 cut(s) 103, 308
Van91I CCANNNNNTGG 2 cut(s) 382, 548
Vha464I CTTAAG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 684
XspI CTAG 2 cut(s) 26, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.