Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038050.1

Orthogroup ID

OG0010493

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3129

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038050.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

attctgcgaattggtttctacgagattgtcaagcttaatatgccaccgtatgctgttgtggatgagaatgtgaggcttgcgaagattgcccttagacatggtgctggcaacatggtcaatgggattctccggaagcttgttctacttaaggaaagtaactctcttcctctacccaaagtagagggtgatgatcgcacacaagcacgtgctcttgccactctgtactctcatcctgtatggatgataaggcgatggacaaagcatctgggacaagaagaagcaattagattgatggcatggaataatagtgatcctagtttcagcttaagggcaaacagtgggaaaggtatttcaagagctgaccttgtgacaaagcttaatttattggaggtcccacatgagctctctttgcatttgaatgattttgtccgtatgaaaaaagggttgcagattgtaattcaagctggtttgctaaaagaaggtttatgttctgtacaggacgagagtgcaggtctggtagtttctgttgtagatccgcaacagggtgaaagcattattgattgttgtgctgctcctggagggaagactctttacatggcatcccttttgagtggccaaggtatggtatacgcaattgacataaatgaagggcggttgagaatcctcaaagaaacggctaagttgcaccaagtagatagtgtcgtcaccactgtccatgctgatatgcgtagttatgctgacaataatactatgaagtgtgataaagttctgttggatgctccatgttctggactgggtgttctctccaagagggcagacttgcgttggaacaggagattagaggatatggaggagcttaagaatttgcaggatgagctccttgatgcagcttctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

299

Amino Acids

33.16

Weight (kDa)

7.8

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13180
fragaria_vesca	FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g42960 FvH4_3g43190
malus_domestica	MD03G1027000.v1.1
prunus_persica	Prupe.6G024300_v2.0.a1 Prupe.6G024300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0077011
rosa_multiflora	Rmu_sc0003323.1_g000006 Rmu_sc0038050.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005130
rosa_rugosa	Rorug05G0450200 Rorug05G0450300.1
rosa_samantha	Rh5AG504900 Rh5BG526600 Rh5CG550400 Rh5DG538800
rosa_wichuraiana	Rw5G047150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AccB7I	CCANNNNNTGG	2 cut(s)	622, 788
AccI	GTMKAC	1 cut(s)	627
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	2 cut(s)	536, 652
AclWI	GGATC	2 cut(s)	305, 527
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	862
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	224, 495
AfiI	CCNNNNNNNGG	3 cut(s)	542, 622, 788
AflII	CTTAAG	3 cut(s)	146, 325, 857
AgsI	TTSAA	3 cut(s)	354, 418, 461
AjnI	CCWGG	1 cut(s)	574
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
Alw21I	GWGCWC	3 cut(s)	211, 405, 879
AlwI	GGATC	2 cut(s)	305, 527
Aor13HI	TCCGGA	1 cut(s)	129
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	2 cut(s)	569, 887
ApoI	RAATTY	1 cut(s)	862
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	197, 557, 697
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	615
BanII	GRGCYC	2 cut(s)	405, 879
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
BbrPI	CACGTG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	3 cut(s)	211, 405, 879
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	2 cut(s)	246, 286
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	1 cut(s)	576
BfaI	CTAG	1 cut(s)	315
BfrI	CTTAAG	3 cut(s)	146, 325, 857
BfuAI	ACCTGC	1 cut(s)	500
BisI	GCNGC	2 cut(s)	570, 888
BlsI	GCNGC	2 cut(s)	571, 889
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	576
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	4 cut(s)	271, 608, 766, 874
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 622, 788
Bse1I	ACTGG	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	6 cut(s)	67, 229, 246, 599, 781, 877
BseLI	CCNNNNNNNGG	3 cut(s)	542, 622, 788
BseNI	ACTGG	1 cut(s)	798
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	615
BsiHKAI	GWGCWC	3 cut(s)	211, 405, 879
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	2 cut(s)	282, 377
BslI	CCNNNNNNNGG	3 cut(s)	542, 622, 788
BsmFI	GGGAC	2 cut(s)	282, 377
BsnI	GGCC	1 cut(s)	615
Bsp1286I	GDGCHC	3 cut(s)	211, 405, 879
Bsp13I	TCCGGA	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	3 cut(s)	190, 310, 532
BspACI	CCGC	2 cut(s)	536, 652
BspANI	GGCC	1 cut(s)	615
BspEI	TCCGGA	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	305, 527
BspTI	CTTAAG	3 cut(s)	146, 325, 857
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	798
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	3 cut(s)	190, 310, 532
BssNAI	GTATAC	1 cut(s)	628
BssT1I	CCWWGG	1 cut(s)	616
Bst1107I	GTATAC	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	48, 338, 712
Bst6I	CTCTTC	1 cut(s)	168
BstAFI	CTTAAG	3 cut(s)	146, 325, 857
BstAUI	TGTACA	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	78, 106
BstDEI	CTNAG	3 cut(s)	92, 678, 894
BstF5I	GGATG	6 cut(s)	67, 229, 246, 599, 781, 877
BstKTI	GATC	3 cut(s)	193, 313, 535
BstMBI	GATC	3 cut(s)	190, 310, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 86, 409, 874
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	6 cut(s)	67, 229, 246, 599, 781, 877
BtsIMutI	CAGTG	2 cut(s)	343, 708
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	2 cut(s)	78, 106
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	223, 494
CviAII	CATG	7 cut(s)	98, 112, 297, 398, 595, 716, 783
CviQI	GTAC	2 cut(s)	223, 494
DdeI	CTNAG	3 cut(s)	92, 678, 894
DpnI	GATC	3 cut(s)	192, 312, 534
DpnII	GATC	3 cut(s)	190, 310, 532
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	2 cut(s)	403, 877
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	2 cut(s)	405, 879
Eco47I	GGWCC	1 cut(s)	391
Eco53kI	GAGCTC	2 cut(s)	403, 877
Eco72I	CACGTG	1 cut(s)	206
EcoICRI	GAGCTC	2 cut(s)	403, 877
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	616
EcoT38I	GRGCYC	2 cut(s)	405, 879
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	7 cut(s)	101, 115, 300, 401, 598, 719, 786
FaqI	GGGAC	2 cut(s)	282, 377
FatI	CATG	7 cut(s)	97, 111, 296, 397, 594, 715, 782
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	570, 888
FokI	GGATG	6 cut(s)	74, 216, 253, 586, 788, 884
FriOI	GRGCYC	2 cut(s)	405, 879
Fsp4HI	GCNGC	2 cut(s)	570, 888
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	570, 888
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	1 cut(s)	130
Hin1II	CATG	7 cut(s)	101, 115, 300, 401, 598, 719, 786
HindIII	AAGCTT	3 cut(s)	32, 134, 374
HinfI	GANTC	3 cut(s)	124, 586, 660
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	3 cut(s)	197, 557, 697
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188III	TCNNGA	3 cut(s)	130, 354, 789
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	2 cut(s)	473, 641
HpyCH4III	ACNGT	3 cut(s)	48, 338, 712
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	412, 448, 509, 685, 868, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 86, 409, 874
HpyF3I	CTNAG	3 cut(s)	92, 678, 894
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	7 cut(s)	101, 115, 300, 401, 598, 719, 786
Kpn2I	TCCGGA	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	190, 310, 532
LmnI	GCTCC	4 cut(s)	577, 784, 853, 882
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	4 cut(s)	271, 608, 766, 874
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	155, 367, 703
MalI	GATC	3 cut(s)	192, 312, 534
MboI	GATC	3 cut(s)	190, 310, 532
MboII	GAAGA	4 cut(s)	94, 155, 287, 595
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	211, 405, 879
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	6 cut(s)	9, 282, 379, 456, 633, 862
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	2 cut(s)	753, 806
MnlI	CCTC	9 cut(s)	66, 175, 177, 382, 572, 674, 804, 835, 844
Mox20I	TGGCCA	1 cut(s)	615
MroI	TCCGGA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	5 cut(s)	36, 147, 326, 378, 858
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	615
MspCI	CTTAAG	3 cut(s)	146, 325, 857
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	40, 86, 409, 874
NdeII	GATC	3 cut(s)	190, 310, 532
NlaIII	CATG	7 cut(s)	101, 115, 300, 401, 598, 719, 786
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	2 cut(s)	367, 703
PfeI	GAWTC	2 cut(s)	124, 660
PflMI	CCANNNNNTGG	2 cut(s)	622, 788
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	571, 889
PleI	GAGTC	1 cut(s)	580
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	391
Psp124BI	GAGCTC	2 cut(s)	405, 879
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	574
PspCI	CACGTG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	224, 495
RsaNI	GTAC	2 cut(s)	223, 494
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	2 cut(s)	405, 879
SaqAI	TTAA	5 cut(s)	36, 147, 326, 378, 858
SatI	GCNGC	2 cut(s)	570, 888
Sau3AI	GATC	3 cut(s)	190, 310, 532
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	3 cut(s)	211, 405, 879
SfaNI	GCATC	4 cut(s)	271, 608, 766, 874
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	146, 325, 857
SmoI	CTYRAG	3 cut(s)	146, 325, 857
Sse9I	AATT	6 cut(s)	9, 282, 379, 456, 633, 862
SsiI	CCGC	2 cut(s)	536, 652
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	2 cut(s)	405, 879
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	3 cut(s)	48, 338, 712
TaiI	ACGT	1 cut(s)	208
TasI	AATT	6 cut(s)	9, 282, 379, 456, 633, 862
TatI	WGTACW	2 cut(s)	222, 493
TfiI	GAWTC	2 cut(s)	124, 660
Tru1I	TTAA	5 cut(s)	36, 147, 326, 378, 858
Tru9I	TTAA	5 cut(s)	36, 147, 326, 378, 858
TscAI	CASTG	2 cut(s)	343, 715
TseFI	GTSAC	2 cut(s)	367, 703
TseI	GCWGC	2 cut(s)	569, 887
Tsp45I	GTSAC	2 cut(s)	367, 703
TspDTI	ATGAA	3 cut(s)	449, 660, 767
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	343, 715
Van91I	CCANNNNNTGG	2 cut(s)	622, 788
Vha464I	CTTAAG	3 cut(s)	146, 325, 857
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.