AT3G13229

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017083
Physical Location & Seq
Reverse (-)
4268382 .. 4269691
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13229.1

Sequence Viewer

Length: 870 bp
ATGTTTAATCAATCCAGCTCTGTCTCGTTAATCTACGTAGTTGAAATCGCCAAAACACCACAAAACGTAGACGTCACTTGGTCTAAAACCACCTCCTCACATTCTTTAACCATCAAAATCGAGAACGTCAAAGACGAGCAACAGAATCATCATCAACCGGTGAAGATAGATCTTTCAGGTTCTTCGTTTTGGGCCAAAAAGGGTCTCAAGAGCTTAGAAGCTAACGGAACTAGAGTCGACGTATACTGGGATTTTCGTCAAGCCAAATTCTCGAACTTCCCTGAACCTTCCTCTGGCTTCTACGTCTCTCTCGTATCCCAAAACGCAACCGTTTTAACGATCGGGGATTTAAGGAACGAAGCTTTAAAGAGGACGAAGAAGAACCCTTCAGCTACAGAAGCTGCCTTGGTCTCCAAGCAAGAACACGTCCACGGGAAACGCGTTTTCTACACGCGGACGGCGTTTGGCGGTGGGGAGTCGAGGCGGGAGAATGAGGTGGTGATCGAAACATCTCTGTCGGGTCCTAGCGATCCAGAGATGTGGATCACGGTGGACGGTGTGCCGGCGATTAGGATCATGAATTTGAATTGGAGATTTAGAGGGAATGAGGTTGTGACTGTGAGTGATGGTGTTTCTTTGGAGATCTTTTGGGACGTTCATGATTGGCTGTTTGAACCCTCTGGTTCGTCTAGTGGGTTGTTTGTTTTCAAGCCTAAAGCTGGATTTGAATCTAAATGTCTTAGTTTTAATGGTGGCTATGGTGATGGTGAAGGTGAGGATCATGATGTGGAAGATGACGATTCGTCGCCCAAGTATTGTCATGTCCTATATGCCGTCAAAGAACTAGAATTTCCATGTCAAAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

289

Amino Acids

32.3

Weight (kDa)

5.54

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 5 - 280 4.5e-88 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccI GTMKAC 3 cut(s) 69, 237, 243
AccII CGCG 2 cut(s) 441, 454
AciI CCGC 3 cut(s) 454, 468, 484
AclWI GGATC 4 cut(s) 524, 551, 581, 786
AcsI RAATTY 3 cut(s) 266, 580, 848
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 293, 719
AflIII ACRYGT 2 cut(s) 424, 439
AgeI ACCGGT 1 cut(s) 157
AgsI TTSAA 5 cut(s) 44, 586, 674, 709, 728
AhdI GACNNNNNGTC 1 cut(s) 802
AjiI CACGTC 1 cut(s) 427
AluBI AGCT 7 cut(s) 18, 213, 221, 362, 392, 401, 719
AluI AGCT 7 cut(s) 18, 213, 221, 362, 392, 401, 719
Alw26I GTCTC 4 cut(s) 28, 209, 310, 415
AlwI GGATC 4 cut(s) 524, 551, 581, 786
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 266, 580, 848
AsiGI ACCGGT 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 192, 521
AsuHPI GGTGA 5 cut(s) 172, 511, 773, 779, 785
AvaII GGWCC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 388
BccI CCATC 3 cut(s) 119, 620, 758
BceAI ACGGC 2 cut(s) 474, 818
BciVI GTATCC 1 cut(s) 325
BcoDI GTCTC 4 cut(s) 28, 209, 310, 415
BfaI CTAG 4 cut(s) 231, 525, 690, 845
BfmI CTRYAG 1 cut(s) 393
BfuI GTATCC 1 cut(s) 325
BglII AGATCT 2 cut(s) 169, 642
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 521
BmeRI GACNNNNNGTC 1 cut(s) 802
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 192, 521
BmiI GGNNCC 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 37
BsaBI GATNNNNATC 3 cut(s) 542, 572, 727
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 209, 415
BsaJI CCNNGG 2 cut(s) 405, 430
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 719
Bse118I RCCGGY 2 cut(s) 157, 562
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 3 cut(s) 542, 572, 727
BseDI CCNNGG 2 cut(s) 405, 430
BseJI GATNNNNATC 3 cut(s) 542, 572, 727
BseLI CCNNNNNNNGG 2 cut(s) 293, 719
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 2 cut(s) 441, 454
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 158, 563
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 293, 719
BsmAI GTCTC 4 cut(s) 28, 209, 310, 415
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 2 cut(s) 209, 415
Bsp143I GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
BspACI CCGC 3 cut(s) 454, 468, 484
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 2 cut(s) 441, 454
BspHI TCATGA 3 cut(s) 576, 658, 781
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 4 cut(s) 524, 551, 581, 786
BspTNI GGTCTC 2 cut(s) 209, 415
BsrFI RCCGGY 2 cut(s) 157, 562
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 2 cut(s) 157, 562
BssECI CCNNGG 2 cut(s) 405, 430
BssMI GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
BssNAI GTATAC 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 244
Bst4CI ACNGT 4 cut(s) 331, 550, 557, 619
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 2 cut(s) 214, 740
BstDSI CCRYGG 1 cut(s) 430
BstFNI CGCG 2 cut(s) 441, 454
BstKTI GATC 8 cut(s) 172, 342, 504, 532, 546, 576, 645, 781
BstMAI GTCTC 4 cut(s) 28, 209, 310, 415
BstMBI GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 393
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 2 cut(s) 441, 454
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 2 cut(s) 169, 642
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 2 cut(s) 169, 642
BstZ17I GTATAC 1 cut(s) 244
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 401
CciI TCATGA 3 cut(s) 576, 658, 781
Cfr10I RCCGGY 2 cut(s) 157, 562
Cfr13I GGNCC 2 cut(s) 192, 521
CspAI ACCGGT 1 cut(s) 157
CviAII CATG 5 cut(s) 577, 659, 782, 821, 855
DdeI CTNAG 2 cut(s) 214, 740
DpnI GATC 8 cut(s) 171, 341, 503, 531, 545, 575, 644, 780
DpnII GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
DraI TTTAAA 1 cut(s) 366
DriI GACNNNNNGTC 1 cut(s) 802
Eam1105I GACNNNNNGTC 1 cut(s) 802
Eco105I TACGTA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 2 cut(s) 209, 415
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 5 cut(s) 580, 662, 785, 824, 858
FaiI YATR 9 cut(s) 244, 578, 660, 759, 783, 822, 829, 831, 856
FaqI GGGAC 1 cut(s) 665
FatI CATG 5 cut(s) 576, 658, 781, 820, 854
FauI CCCGC 1 cut(s) 477
FblI GTMKAC 3 cut(s) 69, 237, 243
Fnu4HI GCNGC 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 4 cut(s) 231, 525, 690, 845
GluI GCNGC 1 cut(s) 402
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 158, 563
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 5 cut(s) 580, 662, 785, 824, 858
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 5 cut(s) 145, 234, 476, 728, 800
HpaII CCGG 2 cut(s) 158, 563
HphI GGTGA 5 cut(s) 172, 511, 773, 779, 785
Hpy166II GTNNAC 5 cut(s) 70, 238, 244, 430, 553
Hpy188III TCNNGA 7 cut(s) 121, 208, 271, 533, 577, 659, 782
Hpy8I GTNNAC 5 cut(s) 70, 238, 244, 430, 553
Hpy99I CGWCG 2 cut(s) 242, 808
HpyAV CCTTC 3 cut(s) 297, 396, 764
HpyCH4III ACNGT 4 cut(s) 331, 550, 557, 619
HpyCH4IV ACGT 8 cut(s) 36, 66, 72, 126, 240, 303, 426, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 2 cut(s) 214, 740
HpySE526I ACGT 8 cut(s) 36, 66, 72, 126, 240, 303, 426, 654
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 5 cut(s) 580, 662, 785, 824, 858
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
Kzo9I GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
Lsp1109I GCAGC 1 cut(s) 388
MaeI CTAG 4 cut(s) 231, 525, 690, 845
MaeII ACGT 8 cut(s) 36, 66, 72, 126, 240, 303, 426, 654
MaeIII GTNAC 2 cut(s) 73, 613
MalI GATC 8 cut(s) 171, 341, 503, 531, 545, 575, 644, 780
MboI GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
MboII GAAGA 5 cut(s) 174, 175, 388, 391, 803
MflI RGATCY 2 cut(s) 169, 642
MluCI AATT 5 cut(s) 266, 580, 586, 848, 865
MluI ACGCGT 1 cut(s) 439
MlyI GAGTC 2 cut(s) 243, 485
MroNI GCCGGC 1 cut(s) 562
MseI TTAA 7 cut(s) 6, 29, 107, 335, 350, 365, 747
MspI CCGG 2 cut(s) 158, 563
MvnI CGCG 2 cut(s) 441, 454
MwoI GCNNNNNNNGC 1 cut(s) 398
NaeI GCCGGC 1 cut(s) 564
NdeII GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
NgoMIV GCCGGC 1 cut(s) 562
NlaIII CATG 5 cut(s) 580, 662, 785, 824, 858
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 2 cut(s) 73, 613
PagI TCATGA 3 cut(s) 576, 658, 781
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 309, 438, 458
PdiI GCCGGC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 145, 728, 800
PinAI ACCGGT 1 cut(s) 157
PkrI GCNGC 1 cut(s) 403
Ple19I CGATCG 1 cut(s) 342
PleI GAGTC 2 cut(s) 242, 484
PpsI GAGTC 2 cut(s) 242, 484
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 192, 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 2 cut(s) 169, 642
PvuI CGATCG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 7 cut(s) 6, 29, 107, 335, 350, 365, 747
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 8 cut(s) 169, 339, 501, 529, 543, 573, 642, 778
Sau96I GGNCC 2 cut(s) 192, 521
SchI GAGTC 2 cut(s) 243, 485
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 5 cut(s) 266, 580, 586, 848, 865
SsiI CCGC 3 cut(s) 454, 468, 484
SspMI CTAG 4 cut(s) 231, 525, 690, 845
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 331, 550, 557, 619
TaiI ACGT 8 cut(s) 39, 69, 75, 129, 243, 306, 429, 657
TaqI TCGA 5 cut(s) 120, 237, 272, 479, 504
TasI AATT 5 cut(s) 266, 580, 586, 848, 865
TfiI GAWTC 3 cut(s) 145, 728, 800
Tru1I TTAA 7 cut(s) 6, 29, 107, 335, 350, 365, 747
Tru9I TTAA 7 cut(s) 6, 29, 107, 335, 350, 365, 747
TseFI GTSAC 2 cut(s) 73, 613
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 2 cut(s) 73, 613
TspDTI ATGAA 2 cut(s) 593, 647
TspGWI ACGGA 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 3 cut(s) 266, 580, 848
XmiI GTMKAC 3 cut(s) 69, 237, 243
XspI CTAG 4 cut(s) 231, 525, 690, 845
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.