FvH4_3g42170

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017083
Physical Location & Seq
Forward (+)
35230596 .. 35231496
901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42170.t1

Sequence Viewer

Length: 849 bp
ATGTCTAACCATCTTCTTGAATCCATTCCCTTTTCGATTTCAAAACCACCATCAGCTGAGAAAGGTTGCAAGGTGCAGGAAAATGAAGACAAGGCGGCTCCAGAGAACGCTGTGACCTATGTCTACCAAGCTAAACTAGCTGAGTTGTACTGCAGTGTCACAGCGACATGGGGAAAAGACCTCACAAACCATTCCCTTTGCATCGAAGTGGCAAAGCCTTGTCAAGAAGCACTCTACATTTGCAAGCTTGACCTAAATTCCTGTCAATTGTGGGGGCAAGAAAGGTCTCAGGCAAAATTCTCCAGCAACCCGGAGCCATGTTCGGATTACTATGTTGCCTTGGTGTCCAAGGCAGAGGTGGTTTTACTGCTAGGGGATCTAGTGACAGATGCTTATAACAGAACCAGATCAAAACCGGCTTTCGAAAGGGCTACATTGATGTACAAGAAGGAATATGTGTGTGGGAGAAGACTGTTTTGCTCCAAAGCCATGTTGAGAGTAGGGAAAGAAGAGCATGACATTGTCATTGAAACTTCACTATCAGGGCTTAATGATCCTGAAATGTGGATTACTATAGACGCAGTGACCATTCGGATCATGAACTTGAATCGGAGATTTAGAGGGAATGAGAGTTTGATGTTGTATGATTTTCCAGTTGAAATATTCTGGGATGTGCATGATTGGTTGTTTAGTAATCAAGCCTCAGGCCAAGGCTTGTTCATTTTCAAGCCAGGCAGGCTAGATTGGGAGTCTAGTAGAAATACTGAGTATGACTCACCAAAAGAGAGCTCTTTAAGTACAGAGTTTTGCCATATTCTTTATGAATCCGGCTCCTCTAAAGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

5.4

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 34 - 274 1.5e-64 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 95
AclWI GGATC 3 cut(s) 384, 548, 602
AcsI RAATTY 2 cut(s) 256, 296
AfaI GTAC 3 cut(s) 149, 443, 799
AgsI TTSAA 6 cut(s) 20, 42, 530, 607, 659, 727
AjnI CCWGG 1 cut(s) 730
AluBI AGCT 5 cut(s) 56, 131, 140, 247, 789
AluI AGCT 5 cut(s) 56, 131, 140, 247, 789
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 3 cut(s) 384, 548, 602
AoxI GGCC 1 cut(s) 706
ApoI RAATTY 2 cut(s) 256, 296
Asp700I GAANNNNTTC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 768
AsuII TTCGAA 1 cut(s) 423
AxyI CCTNAGG 1 cut(s) 703
BanII GRGCYC 1 cut(s) 791
BbsI GAAGAC 2 cut(s) 93, 475
Bbv12I GWGCWC 1 cut(s) 791
BccI CCATC 2 cut(s) 18, 58
BciT130I CCWGG 1 cut(s) 732
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 5 cut(s) 137, 371, 380, 740, 753
BfmI CTRYAG 2 cut(s) 151, 573
BglI GCCNNNNNGGC 1 cut(s) 736
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 311, 732
BmiI GGNNCC 3 cut(s) 99, 315, 832
BmrFI CCNGG 2 cut(s) 311, 732
BmsI GCATC 2 cut(s) 210, 379
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 93, 475
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpmI CTGGAG 2 cut(s) 84, 286
Bpu14I TTCGAA 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 339, 348, 709
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 653
Bse21I CCTNAGG 1 cut(s) 703
BseBI CCWGG 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 339, 348, 709
BseGI GGATG 1 cut(s) 676
BseMII CTCAG 5 cut(s) 48, 132, 302, 717, 756
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 1 cut(s) 823
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 791
BsiSI CCGG 3 cut(s) 311, 416, 828
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 1 cut(s) 708
Bso31I GGTCTC 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 791
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 4 cut(s) 376, 407, 553, 594
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 5 cut(s) 49, 133, 301, 716, 757
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 99, 315, 832
BspMAI CTGCAG 1 cut(s) 155
BspPI GGATC 3 cut(s) 384, 548, 602
BspQI GCTCTTC 1 cut(s) 504
BspT104I TTCGAA 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 339, 348, 709
BssMI GATC 4 cut(s) 376, 407, 553, 594
BssT1I CCWWGG 3 cut(s) 339, 348, 709
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 1 cut(s) 504
BstAUI TGTACA 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 245, 737
BstDEI CTNAG 5 cut(s) 57, 141, 288, 703, 765
BstF5I GGATG 1 cut(s) 676
BstKTI GATC 4 cut(s) 379, 410, 556, 597
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 4 cut(s) 376, 407, 553, 594
BstMWI GCNNNNNNNGC 2 cut(s) 137, 736
BstNI CCWGG 1 cut(s) 732
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 309, 730
BstSFI CTRYAG 2 cut(s) 151, 573
BstV2I GAAGAC 2 cut(s) 93, 475
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu36I CCTNAGG 1 cut(s) 703
BsuRI GGCC 1 cut(s) 708
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 2 cut(s) 160, 588
BtsIMutI CAGTG 2 cut(s) 160, 588
Cac8I GCNNGC 2 cut(s) 245, 737
CciI TCATGA 1 cut(s) 597
Cfr10I RCCGGY 1 cut(s) 415
CseI GACGC 1 cut(s) 587
Csp6I GTAC 3 cut(s) 148, 442, 798
CviAII CATG 6 cut(s) 168, 318, 490, 515, 598, 677
CviQI GTAC 3 cut(s) 148, 442, 798
DdeI CTNAG 5 cut(s) 57, 141, 288, 703, 765
DpnI GATC 4 cut(s) 378, 409, 555, 596
DpnII GATC 4 cut(s) 376, 407, 553, 594
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 789
Eco130I CCWWGG 3 cut(s) 339, 348, 709
Eco24I GRGCYC 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 789
Eco81I CCTNAGG 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 789
EcoRII CCWGG 1 cut(s) 730
EcoT14I CCWWGG 3 cut(s) 339, 348, 709
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 3 cut(s) 339, 348, 709
FaeI CATG 6 cut(s) 171, 321, 493, 518, 601, 680
FatI CATG 6 cut(s) 167, 317, 489, 514, 597, 676
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 5 cut(s) 137, 371, 380, 740, 753
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 2 cut(s) 84, 286
HaeIII GGCC 1 cut(s) 708
HapII CCGG 3 cut(s) 311, 416, 828
HgaI GACGC 1 cut(s) 587
Hin1II CATG 6 cut(s) 171, 321, 493, 518, 601, 680
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 5 cut(s) 20, 607, 749, 773, 824
HpaII CCGG 3 cut(s) 311, 416, 828
HphI GGTGA 1 cut(s) 768
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 325, 594, 612
Hpy188III TCNNGA 5 cut(s) 17, 101, 224, 557, 598
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4V TGCA 6 cut(s) 69, 76, 153, 201, 243, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 736
HpyF3I CTNAG 5 cut(s) 57, 141, 288, 703, 765
Hsp92II CATG 6 cut(s) 171, 321, 493, 518, 601, 680
Kzo9I GATC 4 cut(s) 376, 407, 553, 594
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 4 cut(s) 103, 313, 485, 836
LweI GCATC 2 cut(s) 210, 379
MaeI CTAG 5 cut(s) 137, 371, 380, 740, 753
MaeIII GTNAC 4 cut(s) 112, 157, 382, 583
MalI GATC 4 cut(s) 378, 409, 555, 596
MboI GATC 4 cut(s) 376, 407, 553, 594
MboII GAAGA 4 cut(s) 5, 98, 480, 521
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 791
MluCI AATT 3 cut(s) 256, 266, 296
MlyI GAGTC 2 cut(s) 758, 767
MnlI CCTC 5 cut(s) 191, 349, 614, 712, 844
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 3 cut(s) 549, 794, 847
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 311, 416, 828
MspR9I CCNGG 2 cut(s) 311, 732
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 732
MwoI GCNNNNNNNGC 2 cut(s) 137, 736
NciI CCSGG 1 cut(s) 311
NdeII GATC 4 cut(s) 376, 407, 553, 594
NlaIII CATG 6 cut(s) 171, 321, 493, 518, 601, 680
NlaIV GGNNCC 3 cut(s) 99, 315, 832
NmuCI GTSAC 4 cut(s) 112, 157, 382, 583
NspV TTCGAA 1 cut(s) 423
PagI TCATGA 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 20, 607, 824
PflFI GACNNNGTC 1 cut(s) 521
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 757, 767
PpsI GAGTC 2 cut(s) 757, 767
PshAI GACNNNNGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 730
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 3 cut(s) 99, 315, 832
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 376
PsyI GACNNNGTC 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 3 cut(s) 149, 443, 799
RsaNI GTAC 3 cut(s) 148, 442, 798
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 791
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 549, 794, 847
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 376, 407, 553, 594
SchI GAGTC 2 cut(s) 758, 767
ScrFI CCNGG 2 cut(s) 311, 732
SduI GDGCHC 1 cut(s) 791
SfaNI GCATC 2 cut(s) 210, 379
SfcI CTRYAG 2 cut(s) 151, 573
SfuI TTCGAA 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 3 cut(s) 256, 266, 296
SsiI CCGC 1 cut(s) 95
SspI AATATT 1 cut(s) 663
SspMI CTAG 5 cut(s) 137, 371, 380, 740, 753
SstI GAGCTC 1 cut(s) 791
StyD4I CCNGG 2 cut(s) 309, 730
StyI CCWWGG 3 cut(s) 339, 348, 709
TaaI ACNGT 1 cut(s) 474
TaqI TCGA 3 cut(s) 35, 204, 423
TasI AATT 3 cut(s) 256, 266, 296
TatI WGTACW 3 cut(s) 147, 441, 797
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 3 cut(s) 20, 607, 824
Tru1I TTAA 3 cut(s) 549, 794, 847
Tru9I TTAA 3 cut(s) 549, 794, 847
TscAI CASTG 2 cut(s) 160, 588
TseFI GTSAC 4 cut(s) 112, 157, 382, 583
Tsp45I GTSAC 4 cut(s) 112, 157, 382, 583
TspDTI ATGAA 4 cut(s) 99, 614, 709, 837
TspRI CASTG 2 cut(s) 160, 588
Tth111I GACNNNGTC 1 cut(s) 521
XapI RAATTY 2 cut(s) 256, 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 5 cut(s) 137, 371, 380, 740, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.