Rmu_sc0000770.1_g000016

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000770.1
OG0017083
Physical Location & Seq
Reverse (-)
62539 .. 64575
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000770.1_g000016.1.cds

Sequence Viewer

Length: 1185 bp
atgtctaatcatcttcttggatccatacccttttcgatttcaaaaccaccatccaacgagaatgtttgccaggtacaggaaagtgaagatagggcagctcgacagaacgctgtgacctatgtctaccaagctaaactagccggattgtgctgcaatgtcacagcaacatggggcaaagacctcacaaatcatttcctttgcatcgaagtggcaaagccttgtcaagaagctctctacgtttgcaagattgacttaaactcttgtcaattgtggggcaagaaaggtctcaaatccttcgacatagatggaagacgagtagatgtttactgggattttcgacaggcaaaattctctggcaacccagagccatgttcggattactatgttgccttggtgtccaaggcagaggtggttttactgctagcggatctagtgacagatgcttataagagaaccagatcaaaaccggctttagaagaggctacattgatgtacaagaaggaagttgtgtgtggaaaaagactgttttgctccaaagccatgttggaagtagggagagaagagcatgacattgtcattgaagcttcactatcagggcccaatgatcctgaaatgtggattactgtagacgggacaatgacgattcggatcatgaacttgaattggagatttagagggaatgagagtgtgatgttgaatgattttccagttgaaattttgtgggatgtgtatgattggttgtttagtaaacaagccacaggccaaggcttgttcattttcaagccaggcaggcttgattgggagtctagtcatagtgaccctggtagtagaaattctgaatacaactcaccaaaagagagctcatcaactatagagttttgccattttctttatgcctggaaaactgatcttcatctgtccaagatcggctttgtcctctatctctttccaggtcgtctgttcctttcaaggttgacttcacctttctacatcagcttcactttcaagaccggcttcatcttcccagatcgcctccatctctttggattgaattcttcaggttctggcgtcgctaaagagcacccagatcgtctgcaagatcgccttcttcatcttcgggtcatgtttctctggcaccgatctcttccggcaccgatctcaacccagtcccgtccggccacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

394

Amino Acids

44.92

Weight (kDa)

7.55

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB1I GGYRCC 2 cut(s) 1134, 1150
AccI GTMKAC 2 cut(s) 123, 627
AciI CCGC 1 cut(s) 425
AclWI GGATC 5 cut(s) 15, 28, 435, 599, 656
AcoI YGGCCR 1 cut(s) 1176
AcsI RAATTY 4 cut(s) 347, 714, 832, 1051
AcuI CTGAAG 1 cut(s) 1041
AcyI GRCGYC 1 cut(s) 1068
AfaI GTAC 2 cut(s) 75, 494
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 9 cut(s) 42, 581, 661, 697, 713, 781, 969, 1006, 1051
AjnI CCWGG 5 cut(s) 69, 784, 820, 896, 949
AluBI AGCT 6 cut(s) 98, 131, 230, 584, 861, 996
AluI AGCT 6 cut(s) 98, 131, 230, 584, 861, 996
Alw21I GWGCWC 2 cut(s) 863, 1083
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 5 cut(s) 15, 28, 435, 599, 656
AlwNI CAGNNNCTG 1 cut(s) 1064
AoxI GGCC 3 cut(s) 596, 760, 1176
ApaI GGGCCC 1 cut(s) 600
ApeKI GCWGC 2 cut(s) 95, 150
ApoI RAATTY 4 cut(s) 347, 714, 832, 1051
AspS9I GGNCC 2 cut(s) 596, 597
AsuHPI GGTGA 2 cut(s) 840, 972
AsuNHI GCTAGC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 600
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 2 cut(s) 1134, 1150
BanII GRGCYC 2 cut(s) 600, 863
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 863, 1083
BbvI GCAGC 2 cut(s) 107, 137
BccI CCATC 3 cut(s) 58, 299, 1044
BcgI CGANNNNNNTGC 2 cut(s) 1070, 1104
BciT130I CCWGG 5 cut(s) 71, 786, 822, 898, 951
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 4 cut(s) 137, 422, 431, 807
BfmI CTRYAG 2 cut(s) 624, 870
BglI GCCNNNNNGGC 1 cut(s) 790
BisI GCNGC 2 cut(s) 96, 151
BlsI GCNGC 2 cut(s) 97, 152
Bme1390I CCNGG 5 cut(s) 71, 786, 822, 898, 951
BmgT120I GGNCC 2 cut(s) 596, 597
BmiI GGNNCC 4 cut(s) 22, 598, 1136, 1152
BmrFI CCNGG 5 cut(s) 71, 786, 822, 898, 951
BmrI ACTGGG 2 cut(s) 337, 1159
BmsI GCATC 2 cut(s) 210, 430
BmtI GCTAGC 1 cut(s) 425
BmuI ACTGGG 2 cut(s) 337, 1159
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 316
BsaBI GATNNNNATC 2 cut(s) 647, 912
BsaHI GRCGYC 1 cut(s) 1068
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 4 cut(s) 390, 399, 763, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 2 cut(s) 466, 1010
Bse1I ACTGG 3 cut(s) 332, 707, 1165
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 2 cut(s) 647, 912
BseBI CCWGG 5 cut(s) 71, 786, 822, 898, 951
BseDI CCNNGG 4 cut(s) 390, 399, 763, 820
BseGI GGATG 2 cut(s) 50, 730
BseJI GATNNNNATC 2 cut(s) 647, 912
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 3 cut(s) 332, 707, 1165
BseSI GKGCMC 1 cut(s) 600
BseXI GCAGC 2 cut(s) 107, 137
BshFI GGCC 3 cut(s) 598, 762, 1178
BshNI GGYRCC 2 cut(s) 1134, 1150
BsiHKAI GWGCWC 2 cut(s) 863, 1083
BsiSI CCGG 5 cut(s) 141, 467, 1011, 1148, 1175
BslFI GGGAC 2 cut(s) 646, 1153
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 646, 1153
BsnI GGCC 3 cut(s) 598, 762, 1178
Bso31I GGTCTC 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 596
Bsp1286I GDGCHC 3 cut(s) 600, 863, 1083
Bsp1407I TGTACA 1 cut(s) 492
BspACI CCGC 1 cut(s) 425
BspANI GGCC 3 cut(s) 598, 762, 1178
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 4 cut(s) 22, 598, 1136, 1152
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 5 cut(s) 15, 28, 435, 599, 656
BspQI GCTCTTC 1 cut(s) 555
BspT107I GGYRCC 2 cut(s) 1134, 1150
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 466, 1010
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 3 cut(s) 332, 707, 1165
BssAI RCCGGY 2 cut(s) 466, 1010
BssECI CCNNGG 4 cut(s) 390, 399, 763, 820
BssNI GRCGYC 1 cut(s) 1068
BssT1I CCWWGG 3 cut(s) 390, 399, 763
Bst2UI CCWGG 5 cut(s) 71, 786, 822, 898, 951
Bst4CI ACNGT 2 cut(s) 525, 625
Bst6I CTCTTC 3 cut(s) 471, 555, 1149
BstACI GRCGYC 1 cut(s) 1068
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 423, 791
BstF5I GGATG 2 cut(s) 50, 730
BstMAI GTCTC 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 137, 790
BstNI CCWGG 5 cut(s) 71, 786, 822, 898, 951
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 5 cut(s) 69, 784, 820, 896, 949
BstSFI CTRYAG 2 cut(s) 624, 870
BstSLI GKGCMC 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 107, 137
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 20, 427
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstYI RGATCY 2 cut(s) 20, 427
BsuRI GGCC 3 cut(s) 598, 762, 1178
BtsCI GGATG 2 cut(s) 50, 730
Cac8I GCNNGC 2 cut(s) 423, 791
CaiI CAGNNNCTG 1 cut(s) 1064
CciI TCATGA 1 cut(s) 651
Cfr10I RCCGGY 2 cut(s) 466, 1010
Cfr13I GGNCC 2 cut(s) 596, 597
CseI GACGC 1 cut(s) 1057
Csp6I GTAC 2 cut(s) 74, 493
CviAII CATG 6 cut(s) 168, 369, 541, 566, 652, 1123
CviQI GTAC 2 cut(s) 74, 493
EaeI YGGCCR 1 cut(s) 1176
Eam1104I CTCTTC 3 cut(s) 471, 555, 1149
EarI CTCTTC 3 cut(s) 471, 555, 1149
Ecl136II GAGCTC 1 cut(s) 861
Eco130I CCWWGG 3 cut(s) 390, 399, 763
Eco24I GRGCYC 2 cut(s) 600, 863
Eco31I GGTCTC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 1041
EcoICRI GAGCTC 1 cut(s) 861
EcoO109I RGGNCCY 1 cut(s) 596
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 5 cut(s) 69, 784, 820, 896, 949
EcoT14I CCWWGG 3 cut(s) 390, 399, 763
EcoT38I GRGCYC 2 cut(s) 600, 863
ErhI CCWWGG 3 cut(s) 390, 399, 763
FaeI CATG 6 cut(s) 171, 372, 544, 569, 655, 1126
FaqI GGGAC 2 cut(s) 646, 1153
FatI CATG 6 cut(s) 167, 368, 540, 565, 651, 1122
FblI GTMKAC 2 cut(s) 123, 627
Fnu4HI GCNGC 2 cut(s) 96, 151
FokI GGATG 2 cut(s) 37, 737
FriOI GRGCYC 2 cut(s) 600, 863
Fsp4HI GCNGC 2 cut(s) 96, 151
FspBI CTAG 4 cut(s) 137, 422, 431, 807
GluI GCNGC 2 cut(s) 96, 151
HaeIII GGCC 3 cut(s) 598, 762, 1178
HapII CCGG 5 cut(s) 141, 467, 1011, 1148, 1175
HgaI GACGC 1 cut(s) 1057
Hin1I GRCGYC 1 cut(s) 1068
Hin1II CATG 6 cut(s) 171, 372, 544, 569, 655, 1126
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 2 cut(s) 643, 803
HpaII CCGG 5 cut(s) 141, 467, 1011, 1148, 1175
HphI GGTGA 2 cut(s) 840, 972
Hpy166II GTNNAC 5 cut(s) 124, 325, 628, 749, 975
Hpy188I TCNGA 3 cut(s) 376, 648, 838
Hpy188III TCNNGA 4 cut(s) 224, 608, 652, 1006
Hpy8I GTNNAC 5 cut(s) 124, 325, 628, 749, 975
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 3 cut(s) 304, 493, 1115
HpyCH4III ACNGT 2 cut(s) 525, 625
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 4 cut(s) 153, 201, 243, 1096
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 790
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 1068
Hsp92II CATG 6 cut(s) 171, 372, 544, 569, 655, 1126
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 536
Lsp1109I GCAGC 2 cut(s) 107, 137
LweI GCATC 2 cut(s) 210, 430
MaeI CTAG 4 cut(s) 137, 422, 431, 807
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 112, 157, 433, 815
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 2 cut(s) 20, 427
MhlI GDGCHC 3 cut(s) 600, 863, 1083
MluCI AATT 6 cut(s) 266, 347, 661, 714, 832, 1051
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 78, 525
MnlI CCTC 6 cut(s) 191, 400, 472, 668, 947, 1043
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 5 cut(s) 141, 467, 1011, 1148, 1175
MspR9I CCNGG 5 cut(s) 71, 786, 822, 898, 951
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 5 cut(s) 71, 786, 822, 898, 951
MwoI GCNNNNNNNGC 2 cut(s) 137, 790
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 6 cut(s) 171, 372, 544, 569, 655, 1126
NlaIV GGNNCC 4 cut(s) 22, 598, 1136, 1152
NmuCI GTSAC 4 cut(s) 112, 157, 433, 815
PagI TCATGA 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 643
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 97, 152
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
PshAI GACNNNNGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 863
Psp6I CCWGG 5 cut(s) 69, 784, 820, 896, 949
PspGI CCWGG 5 cut(s) 69, 784, 820, 896, 949
PspN4I GGNNCC 4 cut(s) 22, 598, 1136, 1152
PspOMI GGGCCC 1 cut(s) 596
PspPI GGNCC 2 cut(s) 596, 597
PstNI CAGNNNCTG 1 cut(s) 1064
PsuI RGATCY 2 cut(s) 20, 427
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 2 cut(s) 75, 494
RsaNI GTAC 2 cut(s) 74, 493
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 863
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 96, 151
Sau96I GGNCC 2 cut(s) 596, 597
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 5 cut(s) 71, 786, 822, 898, 951
SduI GDGCHC 3 cut(s) 600, 863, 1083
SfaNI GCATC 2 cut(s) 210, 430
SfcI CTRYAG 2 cut(s) 624, 870
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 6 cut(s) 266, 347, 661, 714, 832, 1051
SsiI CCGC 1 cut(s) 425
SspMI CTAG 4 cut(s) 137, 422, 431, 807
SstI GAGCTC 1 cut(s) 863
StyD4I CCNGG 5 cut(s) 69, 784, 820, 896, 949
StyI CCWWGG 3 cut(s) 390, 399, 763
TaaI ACNGT 2 cut(s) 525, 625
TaiI ACGT 1 cut(s) 240
TaqI TCGA 5 cut(s) 35, 100, 204, 297, 337
TasI AATT 6 cut(s) 266, 347, 661, 714, 832, 1051
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 4 cut(s) 112, 157, 433, 815
TseI GCWGC 2 cut(s) 95, 150
Tsp45I GTSAC 4 cut(s) 112, 157, 433, 815
TspDTI ATGAA 5 cut(s) 668, 763, 902, 1006, 1100
Tth111I GACNNNGTC 1 cut(s) 572
XapI RAATTY 4 cut(s) 347, 714, 832, 1051
XcmI CCANNNNNNNNNTGG 2 cut(s) 406, 541
XmiI GTMKAC 2 cut(s) 123, 627
XspI CTAG 4 cut(s) 137, 422, 431, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.