Rw5G046040

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017083
Physical Location & Seq
Forward (+)
80124755 .. 80125667
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046040.1

Sequence Viewer

Length: 813 bp
ATGTCTAATCATCTTCTTGGATCCATACCCTTTTCGATTTCAAAACCACCATCCAACGAGAATGTTTGCCAGGTACCAGAAAGTGAAGATAAGGCAGCTCGACAGAACGCTGTGACCTATGTCTACCAAGCTAAACTAGCCGGATTGTGCTGCAATGTCACAGCAACATGGGGCAAAGACCTCACAAATGATTTCCTTTGCATCGAAGTGGCAAAGCCTTGTCAAGAAGCTCTCTACGTTTGCAAGATTGACTTAAACTCTTGTCAATTGTGGGGCAAGAAAGGTCTCAAATCCTTCGACATAGACGGAAGACGAGTAGATCCATGTTCGGATTACTATGTTGCCTTGGTGTCCAAGGCAGAGGTGGTTTTACTGCTAGCGGATCTAGTGACAGATGCTTATAAGAGAACCAGATCAAAACCGGCTTTAGAAGAGGCTACATTGATGTACAAGAAGGAAGTTGTGTGTGGAAAAAGACTGTTTTGCTCCAAAGCCATGTTGGAAGTAGGGAGAGAAGAGCATGACATTGTCATTGAAGCTTCACTATCAGGGCCTAATGATCCTGAAATGTGGATTACTGTAGACGGGACAATGACGATTCGGATCATGAACTTGAATTGGAGATTTAGAGGGAATGAGAGTGTGATTAAACAAGCCACAGGCCAAGGCTTGTTCATTTTCAAGCTAGGCAGGCTTGATTGGGAGTCTAGTCATAGTGACCCTGGTAGTAGAAATTCTGAATACAACTCACCAAAAGAGAGCTCAGCAACTACAGAGTTTTGCCATTTTCTTTATGCCTGGAAAACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

270

Amino Acids

30.29

Weight (kDa)

5.91

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 34 - 216 1.4e-49 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AccI GTMKAC 2 cut(s) 123, 582
AciI CCGC 1 cut(s) 380
AclWI GGATC 6 cut(s) 15, 28, 314, 390, 554, 611
AcsI RAATTY 1 cut(s) 733
AfaI GTAC 2 cut(s) 75, 449
AgsI TTSAA 4 cut(s) 42, 536, 616, 682
AjnI CCWGG 3 cut(s) 69, 721, 797
AluBI AGCT 6 cut(s) 98, 131, 230, 539, 685, 762
AluI AGCT 6 cut(s) 98, 131, 230, 539, 685, 762
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 6 cut(s) 15, 28, 314, 390, 554, 611
AoxI GGCC 2 cut(s) 551, 661
ApeKI GCWGC 2 cut(s) 95, 150
ApoI RAATTY 1 cut(s) 733
Asp718I GGTACC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 741
AsuNHI GCTAGC 1 cut(s) 376
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 2 cut(s) 107, 137
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 3 cut(s) 71, 723, 799
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 5 cut(s) 137, 377, 386, 686, 708
BfmI CTRYAG 2 cut(s) 579, 771
BisI GCNGC 2 cut(s) 96, 151
BlpI GCTNAGC 1 cut(s) 763
BlsI GCNGC 2 cut(s) 97, 152
Bme1390I CCNGG 3 cut(s) 71, 723, 799
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 2 cut(s) 22, 75
BmrFI CCNGG 3 cut(s) 71, 723, 799
BmsI GCATC 2 cut(s) 210, 385
BmtI GCTAGC 1 cut(s) 380
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 4 cut(s) 345, 354, 664, 721
Bse118I RCCGGY 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 3 cut(s) 71, 723, 799
BseDI CCNNGG 4 cut(s) 345, 354, 664, 721
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 602
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 777, 798
BseXI GCAGC 2 cut(s) 107, 137
BshFI GGCC 2 cut(s) 553, 663
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 2 cut(s) 141, 422
BslFI GGGAC 1 cut(s) 601
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 2 cut(s) 553, 663
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 764
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 6 cut(s) 20, 319, 382, 413, 559, 603
Bsp1720I GCTNAGC 1 cut(s) 763
BspACI CCGC 1 cut(s) 380
BspANI GGCC 2 cut(s) 553, 663
BspCNI CTCAG 2 cut(s) 776, 799
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 22, 75
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 6 cut(s) 15, 28, 314, 390, 554, 611
BspQI GCTCTTC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 4 cut(s) 345, 354, 664, 721
BssMI GATC 6 cut(s) 20, 319, 382, 413, 559, 603
BssT1I CCWWGG 3 cut(s) 345, 354, 664
Bst2UI CCWGG 3 cut(s) 71, 723, 799
Bst4CI ACNGT 2 cut(s) 480, 580
Bst6I CTCTTC 2 cut(s) 426, 510
BstAUI TGTACA 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 378, 692
BstDEI CTNAG 2 cut(s) 763, 807
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 6 cut(s) 23, 322, 385, 416, 562, 606
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 6 cut(s) 20, 319, 382, 413, 559, 603
BstMWI GCNNNNNNNGC 2 cut(s) 137, 691
BstNI CCWGG 3 cut(s) 71, 723, 799
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 3 cut(s) 69, 721, 797
BstSFI CTRYAG 2 cut(s) 579, 771
BstV1I GCAGC 2 cut(s) 107, 137
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 3 cut(s) 20, 319, 382
BstYI RGATCY 3 cut(s) 20, 319, 382
BsuRI GGCC 2 cut(s) 553, 663
BtsCI GGATG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 378, 692
CciI TCATGA 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 74, 448
CviAII CATG 5 cut(s) 168, 324, 496, 521, 607
CviQI GTAC 2 cut(s) 74, 448
DdeI CTNAG 2 cut(s) 763, 807
DpnI GATC 6 cut(s) 22, 321, 384, 415, 561, 605
DpnII GATC 6 cut(s) 20, 319, 382, 413, 559, 603
Eam1104I CTCTTC 2 cut(s) 426, 510
EarI CTCTTC 2 cut(s) 426, 510
Ecl136II GAGCTC 1 cut(s) 762
Eco130I CCWWGG 3 cut(s) 345, 354, 664
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 762
EcoICRI GAGCTC 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 551
EcoRII CCWGG 3 cut(s) 69, 721, 797
EcoT14I CCWWGG 3 cut(s) 345, 354, 664
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 3 cut(s) 345, 354, 664
FaeI CATG 5 cut(s) 171, 327, 499, 524, 610
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 601
FatI CATG 5 cut(s) 167, 323, 495, 520, 606
FblI GTMKAC 2 cut(s) 123, 582
Fnu4HI GCNGC 2 cut(s) 96, 151
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 764
Fsp4HI GCNGC 2 cut(s) 96, 151
FspBI CTAG 5 cut(s) 137, 377, 386, 686, 708
GluI GCNGC 2 cut(s) 96, 151
HaeIII GGCC 2 cut(s) 553, 663
HapII CCGG 2 cut(s) 141, 422
Hin1II CATG 5 cut(s) 171, 327, 499, 524, 610
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 2 cut(s) 598, 704
HpaII CCGG 2 cut(s) 141, 422
HphI GGTGA 1 cut(s) 741
Hpy166II GTNNAC 2 cut(s) 124, 583
Hpy188I TCNGA 3 cut(s) 331, 603, 739
Hpy188III TCNNGA 3 cut(s) 224, 563, 607
Hpy8I GTNNAC 2 cut(s) 124, 583
HpyAV CCTTC 2 cut(s) 304, 448
HpyCH4III ACNGT 2 cut(s) 480, 580
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 153, 201, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 691
HpyF3I CTNAG 2 cut(s) 763, 807
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 5 cut(s) 171, 327, 499, 524, 610
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 6 cut(s) 20, 319, 382, 413, 559, 603
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 2 cut(s) 107, 137
LweI GCATC 2 cut(s) 210, 385
MaeI CTAG 5 cut(s) 137, 377, 386, 686, 708
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 112, 157, 388, 716
MalI GATC 6 cut(s) 22, 321, 384, 415, 561, 605
MboI GATC 6 cut(s) 20, 319, 382, 413, 559, 603
MboII GAAGA 5 cut(s) 5, 98, 321, 443, 527
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 3 cut(s) 20, 319, 382
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 3 cut(s) 266, 616, 733
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 2 cut(s) 78, 480
MnlI CCTC 4 cut(s) 191, 355, 427, 623
MseI TTAA 2 cut(s) 254, 648
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 2 cut(s) 141, 422
MspR9I CCNGG 3 cut(s) 71, 723, 799
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 3 cut(s) 71, 723, 799
MwoI GCNNNNNNNGC 2 cut(s) 137, 691
NdeII GATC 6 cut(s) 20, 319, 382, 413, 559, 603
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 5 cut(s) 171, 327, 499, 524, 610
NlaIV GGNNCC 2 cut(s) 22, 75
NmuCI GTSAC 4 cut(s) 112, 157, 388, 716
PagI TCATGA 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 598
PflFI GACNNNGTC 1 cut(s) 527
PkrI GCNGC 2 cut(s) 97, 152
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
PshAI GACNNNNGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 69, 721, 797
PspGI CCWGG 3 cut(s) 69, 721, 797
PspN4I GGNNCC 2 cut(s) 22, 75
PspPI GGNCC 1 cut(s) 551
PsuI RGATCY 3 cut(s) 20, 319, 382
PsyI GACNNNGTC 1 cut(s) 527
RsaI GTAC 2 cut(s) 75, 449
RsaNI GTAC 2 cut(s) 74, 448
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 764
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 254, 648
SatI GCNGC 2 cut(s) 96, 151
Sau3AI GATC 6 cut(s) 20, 319, 382, 413, 559, 603
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 3 cut(s) 71, 723, 799
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 2 cut(s) 210, 385
SfcI CTRYAG 2 cut(s) 579, 771
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 3 cut(s) 266, 616, 733
SsiI CCGC 1 cut(s) 380
SspMI CTAG 5 cut(s) 137, 377, 386, 686, 708
SstI GAGCTC 1 cut(s) 764
StyD4I CCNGG 3 cut(s) 69, 721, 797
StyI CCWWGG 3 cut(s) 345, 354, 664
TaaI ACNGT 2 cut(s) 480, 580
TaiI ACGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 35, 100, 204, 297
TasI AATT 3 cut(s) 266, 616, 733
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 2 cut(s) 254, 648
Tru9I TTAA 2 cut(s) 254, 648
TseFI GTSAC 4 cut(s) 112, 157, 388, 716
TseI GCWGC 2 cut(s) 95, 150
Tsp45I GTSAC 4 cut(s) 112, 157, 388, 716
TspDTI ATGAA 2 cut(s) 623, 664
TspGWI ACGGA 1 cut(s) 321
Tth111I GACNNNGTC 1 cut(s) 527
XapI RAATTY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 2 cut(s) 361, 496
XmiI GTMKAC 2 cut(s) 123, 582
XspI CTAG 5 cut(s) 137, 377, 386, 686, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.