Rh5CG541400

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017083
Physical Location & Seq
Forward (+)
75639818 .. 75640378
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG541400.1

Sequence Viewer

Length: 561 bp
ATGTCTAATCATCTTCTTGGATCCATACCCTTTTCGATTTCAAAACCACCATCCAACGAGAATGTTTGCCAGGTACCGGAAAGTGAAGATAAGGCAGCTCGACAGAACGCTGTGACCTATGTCTACCAAACTAAACTAGCTGGATTGTGCTGCAATGTCACAGCAACATGGGGCAAAGACCTCACAAATGATTTCCTTTGCATCGAAGTGGCAAAGCCTTGTCAAGAAGCTCTCTACGTTTGCAAGATTGACTTAAACTCTTGTCAATTGTGGGGCAAGAAAGGTCTCAAATCCTTCGACATTGACGGAAGACGAGTAGATGTTTACTGGGATTTTCGACAGGAAAAATTCTCTGGCAACCCAGAGCCATGTTCGGATTACTATGTTGCCTTGGTGTCCAAGGCAGAGGTGGTTTTACTGCTAGCGGATCTAGTGACAGATGCTTATAAGAGAACCAGATCAAAACCGGCTTTAGAAGAGGCTACATTGATGTACAAGAAGGAAGTTGTGTGTGGAAAAAGACTGTTTTTCTCCAAAGCCATGTTGGAAGTAGGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

8.02

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 34 - 183 4e-44 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 425
AclWI GGATC 3 cut(s) 15, 28, 435
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 2 cut(s) 75, 494
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 42
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 3 cut(s) 98, 140, 230
AluI AGCT 3 cut(s) 98, 140, 230
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 3 cut(s) 15, 28, 435
ApeKI GCWGC 2 cut(s) 95, 150
ApoI RAATTY 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 421
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 107, 137
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 137, 422, 431
BisI GCNGC 2 cut(s) 96, 151
BlsI GCNGC 2 cut(s) 97, 152
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 22, 75
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 210, 430
BmtI GCTAGC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 337
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 390, 399
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 390, 399
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 107, 137
BshNI GGYRCC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 77, 467
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 3 cut(s) 20, 427, 458
BspACI CCGC 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 22, 75
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 3 cut(s) 15, 28, 435
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 390, 399
BssMI GATC 3 cut(s) 20, 427, 458
BssT1I CCWWGG 2 cut(s) 390, 399
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 525
Bst6I CTCTTC 1 cut(s) 471
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 423
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 3 cut(s) 23, 430, 461
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 20, 427, 458
BstNI CCWGG 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 107, 137
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 20, 427
BstYI RGATCY 2 cut(s) 20, 427
BtsCI GGATG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 466
Csp6I GTAC 2 cut(s) 74, 493
CviAII CATG 3 cut(s) 168, 369, 541
CviJI RGCY 8 cut(s) 98, 140, 217, 230, 367, 470, 482, 539
CviKI_1 RGCY 8 cut(s) 98, 140, 217, 230, 367, 470, 482, 539
CviQI GTAC 2 cut(s) 74, 493
DpnI GATC 3 cut(s) 22, 429, 460
DpnII GATC 3 cut(s) 20, 427, 458
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 2 cut(s) 390, 399
Eco31I GGTCTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 390, 399
ErhI CCWWGG 2 cut(s) 390, 399
FaeI CATG 3 cut(s) 171, 372, 544
FaiI YATR 7 cut(s) 26, 120, 169, 370, 384, 447, 542
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 3 cut(s) 167, 368, 540
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 96, 151
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 96, 151
FspBI CTAG 3 cut(s) 137, 422, 431
GluI GCNGC 2 cut(s) 96, 151
HapII CCGG 2 cut(s) 77, 467
Hin1II CATG 3 cut(s) 171, 372, 544
HpaII CCGG 2 cut(s) 77, 467
Hpy166II GTNNAC 2 cut(s) 124, 325
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 124, 325
HpyAV CCTTC 2 cut(s) 304, 493
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 153, 201, 243
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 171, 372, 544
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 20, 427, 458
Lsp1109I GCAGC 2 cut(s) 107, 137
LweI GCATC 2 cut(s) 210, 430
MaeI CTAG 3 cut(s) 137, 422, 431
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 112, 157, 433
MalI GATC 3 cut(s) 22, 429, 460
MboI GATC 3 cut(s) 20, 427, 458
MboII GAAGA 4 cut(s) 5, 98, 321, 488
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 2 cut(s) 20, 427
MluCI AATT 2 cut(s) 266, 347
MmeI TCCRAC 2 cut(s) 78, 525
MnlI CCTC 3 cut(s) 191, 400, 472
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 2 cut(s) 77, 467
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 71
NdeII GATC 3 cut(s) 20, 427, 458
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 3 cut(s) 171, 372, 544
NlaIV GGNNCC 2 cut(s) 22, 75
NmuCI GTSAC 3 cut(s) 112, 157, 433
PkrI GCNGC 2 cut(s) 97, 152
PshAI GACNNNNGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 22, 75
PsuI RGATCY 2 cut(s) 20, 427
RsaI GTAC 2 cut(s) 75, 494
RsaNI GTAC 2 cut(s) 74, 493
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 96, 151
Sau3AI GATC 3 cut(s) 20, 427, 458
ScrFI CCNGG 1 cut(s) 71
SetI ASST 9 cut(s) 75, 100, 119, 142, 183, 232, 240, 286, 411
SfaNI GCATC 2 cut(s) 210, 430
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 2 cut(s) 266, 347
SsiI CCGC 1 cut(s) 425
SspMI CTAG 3 cut(s) 137, 422, 431
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 2 cut(s) 390, 399
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 1 cut(s) 240
TaqI TCGA 5 cut(s) 35, 100, 204, 297, 337
TasI AATT 2 cut(s) 266, 347
TatI WGTACW 1 cut(s) 492
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 3 cut(s) 112, 157, 433
TseI GCWGC 2 cut(s) 95, 150
Tsp45I GTSAC 3 cut(s) 112, 157, 433
TspGWI ACGGA 1 cut(s) 321
XapI RAATTY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 2 cut(s) 406, 541
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 3 cut(s) 137, 422, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.