RchiOBHm_Chr5g0075431

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017083
Physical Location & Seq
Forward (+)
81251167 .. 81251442
276 bp
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UTR
Exon/CDS
Intron
PRQ35015

Sequence Viewer

Length: 276 bp
ATGTTTGCCCTGCAGGAAAGTGAAGATAAGGCAGCTCCACAGAACGCTGTGACCTATGTCTACCAAGCTAAACTAGCCGGATTGTGCTGCAATGTCACAGCAACATGGGGGAAAGACCTCACAAATCATTTCCTTTGCATCGAAGTGGCAAAGCCTTGTCAAGAAGCTCTCTACGTTTGCAAGATTGACTTAAACTCTTGTCAATTGTGGGGCAAGAAAGGTCTCAAATCCTCCGACATAGGTGGAAGACGAGTAGATGTTTACTGGGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

6.53

Isoelectric Point (pI)

25.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 13 - 91 1.2e-17 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AluBI AGCT 3 cut(s) 35, 68, 167
AluI AGCT 3 cut(s) 35, 68, 167
Alw26I GTCTC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 32, 87
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 44, 74
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 33, 88
BlsI GCNGC 2 cut(s) 34, 89
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 274
BoxI GACNNNNGTC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 44, 74
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPAI GACNNNNGTC 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 44, 74
BstV2I GAAGAC 1 cut(s) 253
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 35, 68, 77, 154, 167
CviKI_1 RGCY 5 cut(s) 35, 68, 77, 154, 167
Eco31I GGTCTC 1 cut(s) 227
FaeI CATG 1 cut(s) 108
FaiI YATR 3 cut(s) 57, 106, 239
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 1 cut(s) 104
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 33, 88
Fsp4HI GCNGC 2 cut(s) 33, 88
FspBI CTAG 1 cut(s) 74
GluI GCNGC 2 cut(s) 33, 88
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 108
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 2 cut(s) 61, 262
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 61, 262
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 13, 90, 138, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 108
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 23, 91, 250
Lsp1109I GCAGC 2 cut(s) 44, 74
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 49, 94
MboII GAAGA 2 cut(s) 35, 258
MfeI CAATTG 1 cut(s) 203
MluCI AATT 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 2 cut(s) 128, 241
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 49, 94
PkrI GCNGC 2 cut(s) 34, 89
PshAI GACNNNNGTC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 33, 88
SbfI CCTGCAGG 1 cut(s) 15
SdaI CCTGCAGG 1 cut(s) 15
SetI ASST 8 cut(s) 37, 56, 70, 120, 169, 177, 223, 244
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse8387I CCTGCAGG 1 cut(s) 15
Sse9I AATT 1 cut(s) 203
SspMI CTAG 1 cut(s) 74
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 203
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseFI GTSAC 2 cut(s) 49, 94
TseI GCWGC 2 cut(s) 32, 87
Tsp45I GTSAC 2 cut(s) 49, 94
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.