MD11G1038300.v1.1

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017083
Physical Location & Seq
Reverse (-)
3273195 .. 3273548
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1038300.v1.1.491

Sequence Viewer

Length: 354 bp
ATGTGGATTAGCGTAGACAGGACAGTGGCAATTCGGATTATGAACTTAAATTGGAGGTTTAGAGGGAATGAAACTGCCACGCTGAATGATATGCCAGTTGAAATTTTTTGGGATGTGCATGATTGGTTGTTTAGTAGCTTAGGCACAAGCCAAGGGTTTTTCACTTTTAAGGTAAGGAGGGTAGATTGGGAATCATCTAATGTCAATTATGATTATGGGAGTAGAAATTGCATAGATGGAAACTGCAGCGGTTGCAGTTTGCAGCAGAGTCCGTGTAACTCACCAAAAGGCAAAGAGAGCTCATCAAACATAGGAGGATTTTGCCATTTTCTCGAAGCTTGGAAAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

118

Amino Acids

13.43

Weight (kDa)

5.63

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 1 - 115 2.5e-28 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 102
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 3 cut(s) 138, 300, 338
AluI AGCT 3 cut(s) 138, 300, 338
Alw21I GWGCWC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 246, 262
ApoI RAATTY 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 273
BanII GRGCYC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 258, 274
BccI CCATC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 244
BisI GCNGC 2 cut(s) 247, 263
BlsI GCNGC 2 cut(s) 248, 264
Bpu10I CCTNAGC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 258, 274
BsiHKAI GWGCWC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 302
BspACI CCGC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 139, 348
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 252, 297
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 258, 274
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 30
CviAII CATG 1 cut(s) 119
CviJI RGCY 4 cut(s) 138, 150, 300, 338
CviKI_1 RGCY 4 cut(s) 138, 150, 300, 338
DdeI CTNAG 2 cut(s) 139, 348
Ecl136II GAGCTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 122
FaiI YATR 7 cut(s) 41, 92, 120, 210, 216, 233, 311
FatI CATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 247, 263
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 247, 263
GluI GCNGC 2 cut(s) 247, 263
Hin1II CATG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 2 cut(s) 191, 268
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 5 cut(s) 118, 231, 246, 255, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 297
HpyF3I CTNAG 2 cut(s) 139, 348
Hsp92II CATG 1 cut(s) 122
LpnPI CCDG 2 cut(s) 4, 108
Lsp1109I GCAGC 2 cut(s) 258, 274
MaeIII GTNAC 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 5 cut(s) 30, 49, 102, 205, 226
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 4 cut(s) 48, 56, 171, 308
MseI TTAA 2 cut(s) 47, 168
MspA1I CMGCKG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 252, 297
NlaIII CATG 1 cut(s) 122
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 248, 264
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 47, 168
SatI GCNGC 2 cut(s) 247, 263
SchI GAGTC 1 cut(s) 277
SduI GDGCHC 1 cut(s) 302
SetI ASST 5 cut(s) 59, 140, 174, 302, 340
SfcI CTRYAG 1 cut(s) 244
SgeI CNNG 8 cut(s) 31, 91, 107, 131, 159, 164, 285, 344
Sse9I AATT 5 cut(s) 30, 49, 102, 205, 226
SsiI CCGC 1 cut(s) 249
SstI GAGCTC 1 cut(s) 302
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 333
TasI AATT 5 cut(s) 30, 49, 102, 205, 226
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 47, 168
Tru9I TTAA 2 cut(s) 47, 168
TscAI CASTG 1 cut(s) 30
TseI GCWGC 2 cut(s) 246, 262
TspDTI ATGAA 2 cut(s) 56, 84
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 1 cut(s) 30
XapI RAATTY 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.